Bacillus cereus group Multi-Scheme MLST Superclusters

The isolates were combined into 350 distinct groups (superclusters), which are detailed below. The superclusters include a total of 3386 isolates.
There are also 1242 singletons, i.e., isolates that do not share a typing profile with any other isolate (i.e., isolates that have unique genotypes). They are listed here.

The superclusters contain isolates sharing identical sequences and are shown in the tables below. The number and list of shared MLST schemes and/or alleles are also given. In a given supercluster, every isolate in the table shares the listed loci with at least one other strain in the group. Press the "Show Network" button to display a network showing what data are shared among which strains (if the group contains 3 isolates or more). Click on the strain name to get full information and links to allele sequences for a given isolate.
MLST schemes are abbreviated as follows: TH, Tourasse−Helgason; H, Helgason; K, Ko; P, Priest; CS, Candelon−Sorokin.

In addition, you may press the "Show in Supertree" button to mark the isolates of a supercluster in red in the MLST supertree using the Java Archaeopteryx tree viewer. Press the "Extract Subtree" button to display the subtree containing only the isolates of the supercluster (if the group contains 3 isolates or more). The branches of the tree will be colored according to the major phylogenetic clusters of the B. cereus group population, with the following keys:
clusterI,clusterII,clusterIII,clusterIV,clusterV,clusterVI,clusterVII,unclustered.


The trees and subtrees can be saved either in color in PhyloXML format with the associated Archaeopteryx configuration file for viewing with Archaeopteryx (you will need an utility such as "zip/unzip" on Unix/Mac or "WinZip" on Windows to open the files), or in standard (uncolored) Newick/NewHampshire format.

145 isolate(s) sharing MLST alleles in supercluster 1

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.thuringiensis AFS058113Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.c_group BAG1O-3SoilUSA, Massachusetts, Boston26/26TH, H, K, CS, P
B.thuringiensis AFS059526Plant, Corn grainbin dust (2013)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS040286Plant, Corn seed (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS065707Soil (2014)USA, North Carolina26/26TH, H, K, CS, P
B.c_group BAG1X1-2SoilUSA, Massachusetts, Boston26/26TH, H, K, CS, P
B.thuringiensis AFS027178Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS029963Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS016919Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis BGSC4AG1Other, grain siloFrance26/26TH, H, K, CS, P
B.thuringiensis AFS052460Soil (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus MLY1Other, activated sludge (2008)China, Shaoxing26/26TH, H, K, CS, P
B.thuringiensis AFS043063Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis AFS059517Plant, Corn grainbin dust (2013)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS036350Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.thuringiensis AFS002920Plant, Soybean seed (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS053744Soil (2014)USA, New York26/26TH, H, K, CS, P
B.thuringiensis AFS059914Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.thuringiensis AFS023418Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.c_group HuB1-1SoilBelgium26/26TH, H, K, CS, P
B.thuringiensis AFS052778Soil (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS059242Other, excrement (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS029475Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.thuringiensis AFS031631Plant, Corn root (2013)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis AFS059931Soil (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS016894Soil (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS020128Plant, Soybean root (2013)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis AFS097488Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.thuringiensis AFS055854Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS045572Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS071638Plant, Soybean root (2013)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis AFS061653Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS043555Soil (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS009253Plant, tree leaf (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS090477Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis AFS063894Food, Mushroom (2013)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS002866Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis AFS006689Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis BGSC4AD1SoilUSSR, Russia26/26TH, H, K, CS, P
B.thuringiensis AFS011673Plant, Soybean root (2013)USA, Illinois26/26TH, H, K, CS, P
B.thuringiensis AFS048789Soil (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS094940Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis AFS054343Plant, Corn root (2014)USA, Illinois26/26TH, H, K, CS, P
B.thuringiensis AFS095788Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis AFS071454Plant, Soybean root (2014)USA, Missouri26/26TH, H, K, CS, P
B.thuringiensis AFS066710Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS009644Plant, tree leaf (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS056615Plant, Soybean leaf (2014)USA, Missouri26/26TH, H, K, CS, P
B.thuringiensis AFS067634Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS048014Plant, Soybean leaf (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS076597Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS055282Plant, Corn leaf (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS061177Plant, Soybean leaf (2014)USA, Illinois26/26TH, H, K, CS, P
B.thuringiensis AFS015432Soil (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS005083Plant, leaf (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS066836Soil (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS047635Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.cereus ATCC53522Plant, roots of field-grown alfalfa/Lucerne grass (Medicago sativa) (1985)USA, Wisconsin, Arlington26/26TH, H, K, CS, P
B.thuringiensis AFS075082Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS083288Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS078332Plant, Weed plant (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS014334Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS020608Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS048765Plant, Soybean root (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS045516Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS039999Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS096978Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.thuringiensis AFS067605Food, Mushroom (2013)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS049152Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS026252Plant, Corn (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS061455Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.thuringiensis AFS022658Plant, Soybean leaf (2014)USA, Illinois26/26TH, H, K, CS, P
B.thuringiensis AFS076260Plant, Corn grainbin dust (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS030179Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS055002Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.thuringiensis AFS009218Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS018179Plant, Corn grainbin dust (2013)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS014145Plant, Soybean root (2013)USA, Illinois26/26TH, H, K, CS, P
B.thuringiensis AFS097856Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis AFS026926Soil (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS011084Plant, Soybean root (2014)USA, Missouri26/26TH, H, K, CS, P
B.thuringiensis AFS024615Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS079576Plant, core (2014)USA, North Carolina25/26TH, H, CS, P, gyrb, mbl, muts, pyca1, rpob
B.thuringiensis AFS011939Plant, Soybean root (2014)USA, Iowa25/26H, K, P, clpc, dinb, gdpd, purf, yhfl
B.thuringiensis AFS087171Plant, core (2014)USA, North Carolina25/26H, K, CS, glpf, gmk, ilvd, purh, pyca2, tpi
B.thuringiensis AFS031651Animal, Insect, beetle (2013)USA, North Carolina25/26TH, H, CS, P, gyrb, mbl, muts, pyca1, rpob
B.thuringiensis AFS023506Plant, Soybean core (2014)USA, Iowa25/26TH, K, CS, P, ftsa, pyre, succ
B.thuringiensis AFS092108Plant, Soybean core (2014)USA, Iowa25/26TH, H, K, P, dinb, gdpd, purf, yhfl
B.thuringiensis AFS005023(2014)USA, North Carolina25/26TH, H, K, P, dinb, gdpd, purf, yhfl
B.thuringiensis AFS094329Plant, core (2014)USA, North Carolina25/26TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.thuringiensis AFS045814(2014)USA, North Carolina25/26TH, H, CS, P, mbl, mdh, muts, pyca1, rpob
B.thuringiensis AFS065753Animal, earthworm (2013)USA, Minnesota25/26K, CS, P, ccpa, ftsa, glpt, pyre, recf, succ
B.thuringiensis AFS021667Plant, Corn core (2014)USA, Illinois25/26TH, H, CS, P, gyrb, mbl, mdh, pyca1, rpob
B.thuringiensis AFS009835Soil (2014)USA, New York25/26TH, H, K, P, clpc, dinb, purf, yhfl
B.thuringiensis AFS040001Plant, Corn root (2014)USA, Iowa25/26K, CS, P, adk, ftsa, glpt, pyre, recf, succ
B.thuringiensis AFS025854Plant, Soybean core (2014)USA, Iowa25/26TH, K, CS, P, ftsa, recf, succ
B.thuringiensis AFS071939Plant, Weed core (2014)USA, North Carolina25/26TH, H, K, P, clpc, dinb, gdpd, purf
B.thuringiensis AFS041586Plant, Grass core (2014)USA, Iowa25/26TH, H, K, P, clpc, gdpd, purf, yhfl
B.thuringiensis AFS059559Soil (2014)USA, North Carolina25/26TH, H, K, P, clpc, dinb, gdpd, yhfl
B.thuringiensis AFS063640Plant, Corn core (2014)USA, Illinois24/26TH, H, P, clpc, dinb, gyrb, mbl, mdh, purf, pyca1, rpob, yhfl
B.thuringiensis AFS034126Plant, Corn core (2014)USA, Illinois24/26TH, H, CS, gmk, gyrb, ilvd, mbl, mdh, muts, purh, rpob
B.thuringiensis AFS012232Plant, Weed plant (2014)USA, Indiana24/26TH, H, K, P, dinb, gdpd, purf
B.thuringiensis AFS023641Plant, core (2014)USA, North Carolina24/26H, K, clpc, dinb, gmk, ilvd, panc, pta, purf, purh, pyca2, tpi, yhfl
B.thuringiensis AFS082639Plant, core (2014)USA, North Carolina24/26TH, H, K, P, dinb, gdpd, yhfl
B.thuringiensis AFS003097(2014)USA, North Carolina24/26TH, H, K, P, clpc, dinb, gdpd
B.thuringiensis AFS019545Plant, core (2014)USA, North Carolina24/26TH, H, CS, P, gyrb, mbl, pyca1, rpob
B.thuringiensis AFS054835Plant, Corn leaf (2014)USA, Iowa24/26TH, H, CS, gyrb, ilvd, mbl, mdh, purh, pyca1, rpob, tpi
B.thuringiensis B-2012Other, Sediments (2002)Pacific Ocean23/26CS, P, adk, ccpa, ftsa, gyrb, mbl, mdh, muts, pyre, recf, rpob
B.thuringiensis AFS089732Plant, Corn core (2014)USA, Illinois23/26TH, P, dinb, ftsa, gdpd, gyrb, mbl, mdh, purf, pyca1, recf, rpob, succ, yhfl
B.thuringiensis AFS005011Plant, Weed plant (2014)USA, Indiana23/26H, CS, glpf, gmk, gyrb, ilvd, mbl, muts, purh, pyca1, pyca2, rpob
B.cereus MOD1Bc83Food, Whole Black Pepper (2015)USA, Maryland23/26TH, H, P, clpc, dinb, gyrb, mdh, muts, purf, pyca1, rpob
B.thuringiensis AFS029767Plant, Soybean leaf (2014)USA, Minnesota23/26H, K, clpc, gdpd, glpf, gmk, ilvd, pta, purf, pyca2, tpi, yhfl
B.thuringiensis AFS088507Soil (2014)USA, Iowa23/26TH, H, P, clpc, dinb, gyrb, mdh, muts, pyca1, rpob, yhfl
B.thuringiensis AFS033597Soil (2014)USA, North Carolina23/26H, K, clpc, dinb, gdpd, glpf, ilvd, panc, purh, pyca2, tpi, yhfl
B.thuringiensis Bt18247Animal, nematode (Caenorhabditis elegans) 22/26TH, P, clpc, dinb, ftsa, gyrb, mdh, muts, purf, pyca1, recf, rpob, succ
B.cereus FSLK6-0043Dairy products, Laboratory Heat Treated Raw Milk (2012)USA, New York22/26H, clpc, gdpd, glpf, gmk, gyrb, mbl, mdh, panc, purf, purh, pyca1, pyca2, rpob, tpi, yhfl
B.thuringiensis AFS099506Plant, Corn root (2014)USA, Iowa22/26H, K, clpc, gdpd, glpf, gmk, ilvd, panc, purh, pyca2, tpi
B.thuringiensis AFS096410Plant, Corn leaf (2014)USA, Illinois21/26CS, ccpa, ftsa, glpf, glpt, gyrb, ilvd, mbl, pta, purh, pyca1, pyca2, recf, rpob, succ, tpi
B.thuringiensis AFS052034Plant, Soybean leaf (2014)USA, Minnesota21/26K, adk, ccpa, clpc, ftsa, gdpd, glpf, glpt, gmk, ilvd, purf, pyca2, recf, succ, tpi, yhfl
B.thuringiensis AFS084862Plant, Corn core (2014)USA, Illinois20/26H, clpc, dinb, gdpd, glpf, gmk, gyrb, mbl, mdh, purh, pyca1, pyca2, rpob, tpi
B.thuringiensis AFS056597Soil (2014)USA, North Carolina19/26H, dinb, glpf, gmk, gyrb, mbl, mdh, pta, purh, pyca1, pyca2, rpob, yhfl
B.thuringiensis AFS027250Plant, Corn leaf (2014)USA, Illinois17/26K, adk, ccpa, clpc, dinb, ftsa, glpt, ilvd, panc, purh, pyca2, recf
B.c_group KW26[Children-s Hospital Oakland Research Institute (CHORI)]USA, California7/7P
B.cereus HF10Food (2014)Germany, Berlin7/7P
B.c_group KW3[Children-s Hospital Oakland Research Institute (CHORI)]USA, California7/7P
B.cereus SB460Human, blood, drug user (2005) [human septicemia]USA, New York7/7P
B.thuringiensis K14_5846(2014)Korea (South)7/7P
B.cereus Bc_BY_D1-1Soil (2015)Belarus, Gomel7/7P
B.cereus S6624Soil (2007)USA, Maryland, Rockville7/7P
B.cereus S6584Soil (2007)USA, Maryland, Rockville7/7P
B.cereus HF51Food (2015)Germany, Berlin7/7P
B.cereus 2004727352Human, cutaneous lesion (2004) [human wound infection; from an outbreak of cutaneous infection in military cadets; same outbreak as isolates 2004727353 and 2004727354]USA, Georgia7/7P
B.cereus c1617Animal, mouse faeces/stoolsUSA, North Carolina7/7P
B.c_group MCCC1A00841Other, sediments (2005)Pacific Ocean7/7P
B.cereus 2004727353Human, cutaneous lesion (2004) [human wound infection; from an outbreak of cutaneous infection in military cadets; same outbreak as isolates 2004727352 and 2004727354]USA, Georgia7/7P
B.cereus S6590Soil (2007)USA, Maryland, Rockville7/7P
B.cereus HF54Food (2015)Germany, Berlin7/7P
B.c_group FSLR5-0184Dairy products, milk products (2006)USA7/7P
B.cereus S6569Soil (2007)USA, Maryland, Rockville7/7P
B.cereus LFB1687Animal, Insect, Culicidae (Mosquitoes) (2008)Brazil, Sao Paulo7/7TH
B.cereus S6636Soil (2007)USA, Maryland, Rockville7/7P
B.c_group KW7[Children-s Hospital Oakland Research Institute (CHORI)]USA, California7/7P
B.cereus 2004727354Human, cutaneous lesion (2004) [human wound infection; from an outbreak of cutaneous infection in military cadets; same outbreak as isolates 2004727352 and 2004727353]USA, Georgia7/7P
B.c_group KW1[Children-s Hospital Oakland Research Institute (CHORI)]USA, California7/7P
B.cereus S6595Soil (2007)USA, Maryland, Rockville7/7P


3 isolate(s) sharing MLST alleles in supercluster 2

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.c_group VDM034SoilSpain24/26TH, H, P, clpc, gdpd, gyrb, mbl, mdh, purf, pyca1, rpob, yhfl
B.c_group VDM062SoilUK, Scotland24/26TH, H, P, clpc, gdpd, gyrb, mbl, mdh, purf, pyca1, rpob, yhfl
B.thuringiensis PLmBPN01Soil (2012)Poland7/7P


288 isolate(s) sharing MLST alleles in supercluster 3

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.toyonensis AFS058160Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS099364Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.c_group BAG4X2-1SoilUSA, Massachusetts, Boston26/26TH, H, K, CS, P
B.c_group HuB2-9SoilBelgium26/26TH, H, K, CS, P
B.toyonensis AFS050593Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.cereus FSLH8-0488Other, Water from hose connected to pond (2006)USA, New York26/26TH, H, K, CS, P
B.toyonensis AFS014939Plant, Grass core (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS028444Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS081127Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS091569Plant, Soybean root (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS019346Plant, Soybean leaf (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS083298Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis ZBG4Soil (2014)France, Zellenberg26/26TH, H, K, CS, P
B.toyonensis AFS036089Plant, Soybean root (2014)USA, Missouri26/26TH, H, K, CS, P
B.toyonensis AFS086269Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS027862Other, excrement (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS033588Plant, Corn leaf (2014)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS055990Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS081174Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS091045Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.toyonensis AFS089729Soil (2014)USA, North Carolina26/26TH, H, K, CS, P
B.toyonensis AFS084980Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.c_group HuB5-5SoilBelgium26/26TH, H, K, CS, P
B.toyonensis AFS094862Soil (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS006079Plant, Soybean root (2014)USA, Minnesota26/26TH, H, K, CS, P
B.toyonensis AFS027629Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS033493Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS089650Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS051123Plant, Wheat plant (2014)USA, North Carolina26/26TH, H, K, CS, P
B.toyonensis AFS067067Plant, Corn (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis BCT-7112Soil (1966) [active ingredient of the feed additive preparation Toyocerin]Japan, Shizuoka Prefecture, Izu26/26TH, H, K, CS, P
B.toyonensis AFS048987Plant, Weed leaf (2014)USA, Ohio26/26TH, H, K, CS, P
B.toyonensis AFS031162Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.c_group BAG2O-2SoilUSA, Massachusetts, Boston26/26TH, H, K, CS, P
B.toyonensis AFS080033Plant, Soybean leaf (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS001450Plant, Corn (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS089449Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.toyonensis AFS055530Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS001368Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS028541Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS042148Plant, Corn grainbin dust (2013)USA, Iowa26/26TH, H, K, CS, P
B.cereus FSLH8-0482Soil (2006) [soil in areas adjacent to barns]USA, New York26/26TH, H, K, CS, P
B.toyonensis AFS009314Soil (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS045461Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS026256Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.toyonensis AFS001294Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.cereus IP5832Other, commercial probiotic 26/26TH, H, K, CS, P
B.c_group BAG5O-1SoilUSA, Massachusetts, Boston26/26TH, H, K, CS, P
B.cereus 105NeOther, Water (2011)Switzerland, Neuchatel, Ponts-de-Martel26/26TH, H, K, CS, P
B.toyonensis AFS065389Plant, Corn root (2014)USA, Indiana26/26TH, H, K, CS, P
B.toyonensis AFS033477Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.toyonensis AFS072190Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS086995Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.toyonensis AFS035117Plant, Grass core (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS097554Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS095380(2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS084149Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS051073Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.toyonensis AFS050801Soil (2014)USA, North Carolina26/26TH, H, K, CS, P
B.toyonensis AFS093065Plant, Soybean root (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS097065Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus Rock4-18SoilUSA, Maryland, Rockville26/26TH, H, K, CS, P
B.toyonensis AFS060522Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS023984Plant, Soybean root (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS031495Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.toyonensis AFS066620Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS091268Plant, Corn root (2014)USA, Ohio26/26TH, H, K, CS, P
B.toyonensis AFS054329Plant, Corn leaf (2014)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS052350Soil (2014)USA, New York26/26TH, H, K, CS, P
B.c_group VD148SoilUK, Scotland26/26TH, H, K, CS, P
B.toyonensis AFS052650Animal, Insect, Japanese beetle (2013)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS040610Soil (2014)USA, New York26/26TH, H, K, CS, P
B.toyonensis AFS018451Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis GOE7#1Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)Germany, Goettingen26/26TH, H, K, CS, P
B.toyonensis AFS068057Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.c_group BAG6O-1SoilUSA, Massachusetts, Boston26/26TH, H, K, CS, P
B.toyonensis AFS000445Plant, Weed plant (2014)USA, Indiana26/26TH, H, K, CS, P
B.toyonensis AFS039823Soil (2014)USA, New York26/26TH, H, K, CS, P
B.toyonensis AFS095804Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS027027Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis GOE5#1Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)Germany, Goettingen26/26TH, H, K, CS, P
B.toyonensis AFS064666Plant, Weed leaf (2014)USA, Ohio26/26TH, H, K, CS, P
B.toyonensis AFS067541Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.toyonensis AFS039264Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.c_group BAG1O-2SoilUSA, Massachusetts, Boston26/26TH, H, K, CS, P
B.cereus NVH141/1/01(2001) [diarrheal food poisoning outbreak]Norway26/26TH, H, K, CS, P
B.toyonensis AFS086630Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.toyonensis AFS072832Plant, Soybean root (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS045312Soil (2014)USA, North Carolina26/26TH, H, K, CS, P
B.toyonensis AFS043269Plant, Corn leaf (2014)USA, Ohio26/26TH, H, K, CS, P
B.toyonensis AFS055090Soil (2014)USA, New York26/26TH, H, K, CS, P
B.toyonensis AFS089607Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS097295Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS060293Other, excrement (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS049517Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS095385Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS072123Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.toyonensis AFS061705Soil (2014)USA, New York26/26TH, H, K, CS, P
B.c_group HuA2-3SoilBelgium26/26TH, H, K, CS, P
B.toyonensis AFS023559Soil (2014)USA, New York26/26TH, H, K, CS, P
B.toyonensis AFS009906Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS074325Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS022121Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS096476Plant, Soybean root (2013)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS006579Soil (2014)USA, New York26/26TH, H, K, CS, P
B.toyonensis AFS092321Plant, tree leaf (2014)USA, North Carolina26/26TH, H, K, CS, P
B.toyonensis AFS081381Plant, Soybean root (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS017381Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS000087Soil (2013)USA, North Carolina26/26TH, H, K, CS, P
B.toyonensis AFS059543Plant, Corn (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS027674Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS067879Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.toyonensis AFS070094Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.toyonensis AFS099561Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.toyonensis AFS055514Plant, Weed plant (2014)USA, Indiana26/26TH, H, K, CS, P
B.toyonensis AFS041274Plant, Soybean leaf (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS043516Plant, Weed leaf (2014)USA, Indiana26/26TH, H, K, CS, P
B.toyonensis AFS045990Plant, Corn (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS057443Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS098702Plant, Soybean root (2013)USA, Minnesota26/26TH, H, K, CS, P
B.toyonensis AFS016553Plant, Weed plant (2014)USA, Indiana26/26TH, H, K, CS, P
B.toyonensis AFS049391Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS004252Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.toyonensis AFS036256Plant, Soybean root (2014)USA, Missouri26/26TH, H, K, CS, P
B.c_group VD214Other, WaterUK, Scotland26/26TH, H, K, CS, P
B.toyonensis AFS024499Plant, Wheat plant (2014)USA, North Carolina26/26TH, H, K, CS, P
B.toyonensis AFS078111Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.toyonensis AFS007279Plant, Weed plant (2014)USA, Indiana26/26TH, H, K, CS, P
B.toyonensis AFS003709Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus Rock3-29SoilUSA, Maryland, Rockville26/26TH, H, K, CS, P
B.toyonensis AFS099300Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.toyonensis AFS082630Plant, Soybean leaf (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS051208Plant, Weed plant (2014)USA, Indiana26/26TH, H, K, CS, P
B.toyonensis AFS075404Plant, Soybean root (2013)USA, Minnesota26/26TH, H, K, CS, P
B.toyonensis AFS026201Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.toyonensis AFS093377Plant, Soybean root (2014)USA, Minnesota26/26TH, H, K, CS, P
B.toyonensis BAC3151Plant, bean (Phaseolus vulgaris) leaves (2007)Brazil, Minas Gerais, Coimbra26/26TH, H, K, CS, P
B.cereus Rock1-3SoilUSA, Maryland, Rockville26/26TH, H, K, CS, P
B.toyonensis AFS081053Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS083176Plant, Soybean root (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS020717Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS088186Plant, Soybean root (2013)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS062910Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS084242Animal, Insect, Japanese beetle (2013)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS058541Soil (2014)USA, New York26/26TH, H, K, CS, P
B.toyonensis AFS073024Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.toyonensis AFS027646Plant, Corn leaf (2014)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS013932Soil (2014)USA, New York26/26TH, H, K, CS, P
B.toyonensis AFS016448Plant, Weed plant (2014)USA, Indiana25/26TH, H, CS, P, gyrb, mbl, mdh, muts, rpob
B.toyonensis AFS034981Plant, Corn core (2014)USA, Illinois25/26TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.toyonensis AFS017687Soil (2014)USA, Iowa25/26H, K, CS, glpf, gmk, ilvd, purh, pyca2, tpi
B.toyonensis AFS070247Plant, Weed leaf (2014)USA, Indiana25/26TH, K, CS, P, ftsa, recf, succ
B.toyonensis AFS070615Plant, Weed leaf (2014)USA, Indiana25/26TH, K, CS, P, ftsa, pyre, succ
B.toyonensis AFS056055Plant, Soybean core (2014)USA, Iowa25/26TH, H, K, P, clpc, dinb, purf, yhfl
B.toyonensis AFS002053Plant, Corn (2014)USA, Minnesota25/26TH, H, CS, P, gyrb, mbl, muts, pyca1, rpob
B.toyonensis AFS026137Plant, Soybean core (2014)USA, Iowa25/26TH, H, K, CS, gmk, purh, tpi
B.toyonensis AFS068780Other, excrement (2014)USA, Iowa25/26TH, H, CS, P, mbl, mdh, muts, pyca1, rpob
B.c_group HuB4-10SoilBelgium25/26TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.toyonensis AFS020011Plant, Grass core (2014)USA, Iowa25/26TH, H, K, CS, gmk, ilvd, purh
B.toyonensis AFS028618Plant, Corn leaf (2014)USA, Illinois25/26H, K, CS, glpf, gmk, ilvd, purh, pyca2, tpi
B.toyonensis AFS094802Plant, Soybean core (2014)USA, Iowa25/26K, CS, P, adk, ftsa, glpt, pyre, recf, succ
B.toyonensis AFS042818(2014)USA, North Carolina25/26TH, H, CS, P, gyrb, mbl, mdh, muts, rpob
B.toyonensis AFS041177Plant, Weed leaf (2014)USA, Ohio25/26TH, K, CS, P, ftsa, recf, succ
B.toyonensis AFS014496Soil (2014)USA, North Carolina25/26TH, H, K, P, clpc, dinb, purf, yhfl
B.toyonensis AFS089688Plant, Grass core (2014)USA, Iowa25/26K, CS, P, adk, ftsa, glpt, pyre, recf, succ
B.toyonensis AFS062328Plant, Soybean leaf (2014)USA, Minnesota25/26TH, H, K, CS, gmk, ilvd, purh
B.toyonensis AFS027958Plant, Grass core (2014)USA, Iowa25/26TH, H, K, CS, gmk, ilvd, purh
B.toyonensis AFS017221Plant, Soybean core (2014)USA, Iowa25/26H, K, P, clpc, dinb, gdpd, purf, yhfl
B.toyonensis AFS083349Soil (2014)USA, North Carolina25/26TH, H, K, P, dinb, gdpd, purf, yhfl
B.toyonensis AFS064582Plant, Soybean leaf (2014)USA, Minnesota24/26H, CS, glpf, gmk, gyrb, ilvd, mdh, muts, purh, pyca1, pyca2, rpob, tpi
B.toyonensis AFS009420Plant, Soybean leaf (2014)USA, Minnesota24/26K, CS, P, ccpa, ftsa, pyre, recf, succ
B.toyonensis AFS028249Plant, Soybean core (2014)USA, Iowa24/26H, P, clpc, dinb, gdpd, gyrb, mdh, muts, purf, pyca1, rpob, yhfl
B.toyonensis AFS003846Soil (2014)USA, Iowa24/26TH, H, CS, P, gyrb, mdh, muts, rpob
B.c_group VD131SoilMartinique24/26TH, H, K, P, dinb, gdpd, purf
B.toyonensis AFS065951Plant, Corn core (2014)USA, Illinois24/26TH, H, CS, P, mdh, muts, pyca1, rpob
B.toyonensis SJ-S4HumanUSA, Tennessee, Memphis23/26TH, P, clpc, dinb, gdpd, gyrb, mdh, muts, pyca1, pyre, recf, rpob, succ, yhfl
B.toyonensis AFS083448Plant, Soybean leaf (2014)USA, Minnesota23/26H, K, clpc, dinb, gdpd, glpf, gmk, ilvd, pta, purf, purh, pyca2
B.toyonensis AFS082731Plant, Weed plant (2014)USA, Indiana22/26CS, adk, ccpa, ftsa, glpf, glpt, gmk, gyrb, ilvd, mbl, mdh, muts, purh, pyca2, pyre, rpob, succ
B.toyonensis AFS090953(2014)USA, North Carolina22/26P, adk, ccpa, dinb, ftsa, gdpd, gyrb, mdh, muts, panc, purf, pyca1, pyre, recf, succ, yhfl
B.toyonensis VU-DES13Animal, Springtail/Collembola (Folsomia candida) midgutNetherlands, Amsterdam21/26TH, CS, ftsa, gyrb, ilvd, muts, purh, pyca1, pyre, succ, tpi
B.toyonensis AFS044634Plant, Soybean root (2013)USA, Missouri19/26H, clpc, dinb, glpf, gmk, gyrb, mbl, purf, purh, pyca1, pyca2, rpob, tpi
B.toyonensis AFS021349Plant, Corn core (2013)USA, Illinois16/26K, clpc, dinb, ftsa, glpf, glpt, gmk, purf, pyca2, pyre, tpi
B.c_group AH1247Soil (1997) [from the site of an anthrax outbreak]France, Pyrenees mountains11/11TH, H
B.cereus S6607Soil (2007)USA, Maryland, Rockville7/7P
B.c_group B4s1Soil (2002)UK, England, Berkshire7/7P
B.c_group C3g3Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group B4m4Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group A3s11Soil (2002)UK, England, Berkshire7/7P
B.c_group AH1312Human, bloodGermany, Karlsruhe7/7TH
B.c_group AH1311Other, probioticGermany, Karlsruhe7/7TH
B.c_group AR10-1Soil (2012)Argentina7/7P
B.c_group C3s1Soil (2002)UK, England, Berkshire7/7P
B.c_group C3s10Soil (2002)UK, England, Berkshire7/7P
B.c_group C3m2Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.cereus S6641Soil (2007)USA, Maryland, Rockville7/7P
B.c_group PL9Soil 7/7P
B.c_group AR13-1Soil (2012)Argentina7/7P
B.c_group E2s8Soil (2002)UK, England, Berkshire7/7P
B.cereus NC390Human, faeces/stools (1982)Japan7/7P
B.c_group A4s9Soil (2002)UK, England, Berkshire7/7P
B.cereus S6571Soil (2007)USA, Maryland, Rockville7/7P
B.cereus S6606Soil (2007)USA, Maryland, Rockville7/7P
B.c_group B4o11Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group C3s8Soil (2002)UK, England, Berkshire7/7P
B.c_group B4g1Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group A3s7Soil (2002)UK, England, Berkshire7/7P
B.cereus S6559Soil (2007)USA, Maryland, Rockville7/7P
B.c_group A4s10Soil (2002)UK, England, Berkshire7/7P
B.cereus B06_023Human, woundFrance7/7TH
B.c_group A3s6Soil (2002)UK, England, Berkshire7/7P
B.cereus S6635Soil (2007)USA, Maryland, Rockville7/7P
B.c_group A3s9Soil (2002)UK, England, Berkshire7/7P
B.c_group B4g7Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group C3i6Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.cereus S6585Soil (2007)USA, Maryland, Rockville7/7P
B.c_group C3o5Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group C3o40Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.cereus S6604Soil (2007)USA, Maryland, Rockville7/7P
B.cereus LB_063Soil (2006)USA, Maryland7/7P
B.c_group E5i3Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group C3s6Soil (2002)UK, England, Berkshire7/7P
B.cereus BGSC6A8Other, used in commercial probiotic BACTISUBTIL 7/7P
B.cereus BFDA96173(2007)Taiwan, Hsinchu city7/7P
B.cereus 2004721594Other, hair clippers (2004)USA, Georgia7/7P
B.c_group E2o8Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group B4g10Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group A4s2Soil (2002)UK, England, Berkshire7/7P
B.c_group B4s3Soil (2002)UK, England, Berkshire7/7P
B.cereus B03_002Animal, cattle (cow)France7/7TH
B.c_group E2s6Soil (2002)UK, England, Berkshire7/7P
B.c_group C3s2Soil (2002)UK, England, Berkshire7/7P
B.cereus XJ12BC97Food (2012)China, Uygur Region7/7P
B.c_group C3o14Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group E2o6Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group E2s1Soil (2002)UK, England, Berkshire7/7P
B.c_group 3466-8.1Soil [non-pathogenic; Pasteur Institute]France, Paris7/7P
B.c_group E2o10Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group E2o1Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group E2o7Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group C3o41Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group B4s5Soil (2002)UK, England, Berkshire7/7P
B.cereus F4794Human, blood (1982) [pneumonia]USA, Michigan7/7P
B.cereus 2004721597Other, hair clippers (2004)USA, Georgia7/7P
B.c_group KW15[Children-s Hospital Oakland Research Institute (CHORI)]USA, California7/7P
B.c_group C3o19Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group C3s3Soil (2002)UK, England, Berkshire7/7P
B.thuringiensis PLBB15/2Soil (2012)Poland7/7P
B.c_group E2m2Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.cereus S6586Soil (2007)USA, Maryland, Rockville7/7P
B.cereus S6613Soil (2007)USA, Maryland, Rockville7/7P
B.c_group C3m4Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group AH1308Human, faeces/stoolsGermany, Karlsruhe7/7TH
B.cereus S6609Soil (2007)USA, Maryland, Rockville7/7P
B.cereus B03_003Animal, cattle (cow)France7/7TH
B.cereus S6579Soil (2007)USA, Maryland, Rockville7/7P
B.c_group C3s4Soil (2002)UK, England, Berkshire7/7P
B.c_group KW28[Children-s Hospital Oakland Research Institute (CHORI)]USA, California7/7P
B.c_group PL14Soil 7/7P
B.c_group B4s2Soil (2002)UK, England, Berkshire7/7P
B.c_group KW20[Children-s Hospital Oakland Research Institute (CHORI)]USA, California7/7P
B.c_group B4g4Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group PEYR9Soil [non-pathogenic; Pasteur Institute]France, Paris7/7P
B.c_group E2s4Soil (2002)UK, England, Berkshire7/7P
B.cereus R_3238/03Human, blood (2003) [human septicaemia]UK, England7/7P
B.c_group FSLM8-0214Dairy products, milk products (2012)USA7/7P
B.c_group C3i8Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.cereus BGSC6A7#1Other, purified from commercial probiotic BIOSUBTYL DALAT, manufactured in Vietnam [sequences conflicting with isolate BGSC6A7#2] 7/7P
B.cereus S6581Soil (2007)USA, Maryland, Rockville7/7P
B.c_group E2o2Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group C3i2Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group E2i6Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group C3g1Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.cereus S6554Soil (2007)USA, Maryland, Rockville7/7P
B.c_group A4s5Soil (2002)UK, England, Berkshire7/7P
B.c_group E2o4Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group A3s2Soil (2002)UK, England, Berkshire7/7P
B.cereus 9305Human, wound (2005)UK, England, Torquay7/7P
B.thuringiensis SABCG7Food (2017)Austria7/7P
B.c_group B4o5Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group E2i1Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group C3i3Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group C3g5Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.cereus S6632Soil (2007)USA, Maryland, Rockville7/7P
B.thuringiensis PLBPN44/2Soil (2012)Poland7/7P
B.c_group PL10Soil 7/7P
B.c_group E2i4Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group B4g5Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group B4g2Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P


166 isolate(s) sharing MLST alleles in supercluster 4

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.thuringiensis BGSC4J1Animal, Insect, Oriental Tobacco Budworm/Cape Gooseberry Budworm (Heliothis assulta/Helicoverpa assulta)Japan26/26TH, H, K, CS, P
B.thuringiensis AFS061780Plant, Oats (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis BP865Plant, phylloplane (1993)Korea (South)26/26TH, H, K, CS, P
B.cereus B4158Food, vegetables and (fermented) vegetable products (2012)Netherlands26/26TH, H, K, CS, P
B.thuringiensis HD5  26/26TH, H, K, CS, P
B.thuringiensis AFS018409Plant, Oats (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis T07183  26/26TH, H, K, CS, P
B.cereus MOD1Bc21Plant, Natural Sesame Seeds (2015)USA, Maryland26/26TH, H, K, CS, P
B.thuringiensis HD73Animal, Insect [two complete genomes sequenced for this strain with identical MLST sequences] 26/26TH, H, K, CS, P
B.thuringiensis HD29Animal, Insect, Siberian moth (Dendrolimus sibiricus)Czechoslovakia or USSR26/26TH, H, K, CS, P
B.thuringiensis HD133Animal, Insect, Indian meal moth (Plodia interpunctella) [two complete genomes sequenced for this strain with identical MLST sequences]UK, England26/26TH, H, K, CS, P
B.thuringiensis T07148  26/26TH, H, K, CS, P
B.thuringiensis AK47Soil (2010)India, Odisha26/26TH, H, K, CS, P
B.thuringiensis BGSC4J2Animal, Insect, Indian meal moth (Plodia interpunctella)UK, England26/26TH, H, K, CS, P
B.thuringiensis I13  26/26TH, H, K, CS, P
B.thuringiensis T07153  26/26TH, H, K, CS, P
B.thuringiensis BGSC4AE1Animal, Insect, litter of silkworm (Bombyx mori)Japan26/26TH, H, K, CS, P
B.thuringiensis Bc601(2012)China, Tianjin26/26TH, H, K, CS, P
B.thuringiensis T03a001Animal, Insect, Mediterranean flour moth/mill moth (Ephestia kuhniella/Anagasta kuehniella) (1962)France26/26TH, H, K, CS, P
B.cereus RIVMBC934(2002)Netherlands26/26TH, H, K, CS, P
B.thuringiensis 1126_1Soil (2017)China, Hebei Province26/26TH, H, K, CS, P
B.thuringiensis T07019  26/26TH, H, K, CS, P
B.thuringiensis BR37Plant, stored grains (2009)Brazil, Sertanopolis26/26TH, H, K, CS, P
B.thuringiensis T07128  26/26TH, H, K, CS, P
B.thuringiensis BGSC4J5Animal, Insect, Indian meal moth (Plodia interpunctella)UK, England26/26TH, H, K, CS, P
B.thuringiensis BR145Soil, soybean field (2010)Brazil, Parana, Bela Vista do Paraiso26/26TH, H, K, CS, P
B.thuringiensis 7.1oAnimal, Insect, silkworm (Bombyx mori) (2013)UK26/26TH, H, K, CS, P
B.thuringiensis AFS034084Plant, Wheat (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus MOD1Bc231Food, food product (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus 6/27/SHuman, faeces/stools [human diarrhea] 26/26TH, H, K, CS, P
B.thuringiensis BMB3201Soil (2015)China, Hubei Province26/26TH, H, K, CS, P
B.cereus AFS045441(2014)USA, Iowa26/26TH, H, K, CS, P
B.c_group HuB13-1SoilBelgium26/26TH, H, K, CS, P
B.cereus AFS098022Plant, Corn grainbin dust (2013)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS031473Plant, Oats (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus MOD1Bc137Food, Dietary Supplements (2015)USA, Maryland26/26TH, H, K, CS, P
B.c_group ISP2954Food 26/26TH, H, K, CS, P
B.thuringiensis NBIN-866SoilChina, Hubei Province26/26TH, H, K, CS, P
B.thuringiensis T07005  26/26TH, H, K, CS, P
B.thuringiensis BGSC4J3Animal, Insect, Indian meal moth (Plodia interpunctella) [two complete genomes sequenced for this strain with identical MLST sequences]UK, England26/26TH, H, K, CS, P
B.thuringiensis BGSC4G1Animal, Insect, Greater Wax Moth/Honeycomb Moth (Galleria mellonella) (1958)USSR26/26TH, H, K, CS, P
B.thuringiensis G03Soil (2003)China, Hebei, Baoding26/26TH, H, K, CS, P
B.c_group BMG1.7  26/26TH, H, K, CS, P
B.thuringiensis HD11Animal, Insect, Oriental Tobacco Budworm/Cape Gooseberry Budworm (Heliothis assulta/Helicoverpa assulta)Japan26/26TH, H, K, CS, P
B.thuringiensis BGSC4L3[Wild type isolate] 26/26TH, H, K, CS, P
B.thuringiensis Btm27Animal, Insect, Citrus mealybug (Planococcus citri) (2010)Egypt26/26TH, H, K, CS, P
B.thuringiensis BGSC4T1Soil (1976)China26/26TH, H, K, CS, P
B.thuringiensis Leapi01Animal, Insect, Loreyi Leafworm/Cosmopolitan (Mythimna loreyi/Leucania loreyi) dead larvaSpain26/26TH, H, K, CS, P
B.thuringiensis AFS043930Plant, Oats (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis Hu4-2Other, dust sample from maize grain siloSpain26/26TH, H, K, CS, P
B.thuringiensis YWC2-8Soil (2007)China, Hailuo Glacier virgin forest, Sichuan basin26/26TH, H, K, CS, P
B.cereus MOD1Bc30Food, Dietary Supplements (2015)USA, Maryland26/26TH, H, K, CS, P
B.thuringiensis BGSC4X1[Wild type isolate] 26/26TH, H, K, CS, P
B.thuringiensis BGSC4G4Animal, Insect, Indian meal moth (Plodia interpunctella)UK, England26/26TH, H, K, CS, P
B.thuringiensis YC-10Plant, tobacco roots (2010) [two complete genomes sequenced for this strain with identical MLST sequences]China, Hunan Province26/26TH, H, K, CS, P
B.thuringiensis T07030  26/26TH, H, K, CS, P
B.cereus AFS004414Plant, Oats plant (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus MOD1Bc235Food, food product (2016)USA, Maryland26/26TH, H, K, CS, P
B.c_group BAG3X2-2SoilUSA, Massachusetts, Boston25/26TH, H, K, P, clpc, gdpd, purf, yhfl
B.thuringiensis HD136#2Animal, Insect, rice moth (Corcyra cephalonica) [sequences conflicting with isolate HD136#1]UK, England7/7P
B.thuringiensis T05033(1975)USA7/7P
B.c_group C3o34Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.cereus B06_035HumanFrance7/7TH
B.c_group C3o35Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.thuringiensis T07058Animal, Insect, spiny bollworm/Egyptian stemborer (Earias insulana) (1983)France7/7P
B.c_group C3o20Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.thuringiensis ABTS2423(2008)USA7/7P
B.c_group C3o27Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group C3o42Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.thuringiensis IBL88Soil (1987)USA, North Dakota7/7P
B.c_group C3o25Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.thuringiensis BGSC4F4[Wild type isolate] 7/7P
B.c_group C3o24Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.thuringiensis BGSC4D16[Wild type isolate] 7/7P
B.thuringiensis BGSC4F2Animal, Insect, Almond moth (Ephestia cautella/Cadra cautella)Kenya7/7P
B.thuringiensis BGSC4XX5  7/7P
B.thuringiensis IBL749Soil (1984)Nepal7/7P
B.thuringiensis T05005(1964)USA7/7P
B.thuringiensis IBL661Soil (1988)USA, Pennsylvania7/7P
B.thuringiensis BGSC4I5 Canada7/7P
B.thuringiensis IBL743Animal, Insect, gut of an Aedes aeygpti mosquito larva (1984)USA, Maryland7/7P
B.thuringiensis IBL533Soil (1988)Vietnam7/7P
B.c_group C3o17Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group C3o16Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.thuringiensis IBL441Soil (1988)Argentina7/7P
B.thuringiensis YBT-1520  7/7P
B.thuringiensis T07180Animal, Insect, Lepidoptera (1992)Spain7/7P
B.thuringiensis IBL84Soil (1987)USA, Wisconsin7/7P
B.thuringiensis BGSC4D17Animal, Insect, Cabbage Looper moth (Trichoplusia ni)USA, Texas7/7P
B.thuringiensis IBL10012[bears Photorhabdus/Yersinia-like toxin genes] 7/7P
B.thuringiensis IBL159Soil (1987)USA, New Mexico7/7P
B.thuringiensis T03a361(1990)Australia7/7P
B.c_group C3o18Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group PL52SoilPoland7/7P
B.c_group C3o22Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.cereus BGSC6A75(1996) [sequences conflicting with isolate NC1235]Japan7/7P
B.thuringiensis BGSC4D14[Wild type isolate] 7/7P
B.thuringiensis BGSC4G6Other, Reisolation of strain BGSC4G1 7/7P
B.c_group C3o2Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.thuringiensis IBL3757Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL389Soil (1986)USA, Washington D.C.7/7P
B.cereus BC_26Food, egg product (2006)Italy (Southern)7/7P
B.thuringiensis IBL3782Soil (2009)USA, Maryland7/7P
B.c_group C3o32Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.thuringiensis IBL563Soil (1988)USA, North Carolina7/7P
B.thuringiensis BGSC4G2 USA7/7P
B.c_group C3o37Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.thuringiensis BGSC4D19Animal, Insect, dried fruit Beetle (Carpophilus hemipterus)UK, England7/7P
B.thuringiensis IBL1288Soil (1988)Azores7/7P
B.c_group E5s9Soil (2002)UK, England, Berkshire7/7P
B.thuringiensis T03a075Animal, Insect, Small Cabbage White butterfly/Imported Cabbage Worm (Pieris rapae) (1976)Iraq7/7P
B.c_group C3o9Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group C3o3Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.thuringiensis IBL3777Soil (2009)USA, Maryland7/7P
B.c_group C3o13Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.thuringiensis BGSC4I1Animal, Insect, Indian meal moth (Plodia interpunctella)Canada7/7P
B.thuringiensis BGSC4I2Animal, Insect, Raisin moth (Cadra figulilella)USA7/7P
B.thuringiensis T04b012Animal, dead insect, Greater Wax Moth/Honeycomb Moth (Galleria mellonella) (1974)Bulgaria7/7P
B.thuringiensis T03a172(1982)Pakistan7/7P
B.c_group 6_2_YPlant, leaves (2005)UK, England, Dorset7/7P
B.thuringiensis IBL1252Soil (1987)Korea (South)7/7P
B.c_group C3o38Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.thuringiensis IBL1247Soil (1987)Korea (South)7/7P
B.c_group C3o12Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.cereus BFDA95191(2006)Taiwan, Taipei county7/7P
B.cereus S59Soil, mudUSA, Maryland7/7P
B.thuringiensis BGSC4D5[Wild type isolate] 7/7P
B.thuringiensis T05114Other, Astiniae (1985)France7/7P
B.thuringiensis BGSC4G3[Wild type isolate] 7/7P
B.thuringiensis IBL1268Soil (1988)Argentina7/7P
B.c_group C3o11Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.thuringiensis ABTS351(2008)USA7/7P
B.thuringiensis BGSC4D15[Wild type isolate] 7/7P
B.c_group C3o21Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.thuringiensis 164-S-1Plant, leaves of clover (Trifolium hybridum) (2004)UK7/7P
B.thuringiensis ABTS2279(2008)USA7/7P
B.thuringiensis T04b001(1962)Kenya7/7P
B.c_group E5g1Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group C3o8Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group K14_5759(2014)Korea (South)7/7P
B.cereus BGSC6A78Human, wound infection (2004) [sequences conflicting with isolate 211250.S]UK, Scotland7/7P
B.thuringiensis IBL1254Soil (1987)Korea (South)7/7P
B.c_group C3o4Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group C3o29Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group E2o20Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.thuringiensis IBL999Soil (1984)USA, Maryland7/7P
B.cereus S57Soil, mudUSA, Maryland7/7P
B.c_group D10-18.A.iSoil (2006)UK7/7P
B.c_group C3o6Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.cereus S58Animal, swan faeces/stoolsUSA, Maryland7/7P
B.thuringiensis T04b073Soil (1993)Chile7/7P
B.thuringiensis IBL966Soil (1984)Nepal7/7P
B.thuringiensis 248-S-1Plant, leaves of clover (Trifolium hybridum) (2004)UK7/7P
B.c_group C3o10Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group C3o15Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group DiPelOther, DiPel insecticide 7/7P
B.thuringiensis T07033Animal, Insect, Oriental Tobacco Budworm/Cape Gooseberry Budworm (Heliothis assulta/Helicoverpa assulta) (1975)Japan7/7P
B.thuringiensis T04b054(1986)Iraq7/7P
B.thuringiensis BGSC4E7(1991) [sequences conflicting with isolate T04236]Indonesia7/7P
B.thuringiensis BGSC4D18Animal, Insect, Cabbage Looper moth (Trichoplusia ni)USA7/7P
B.thuringiensis T03a287(1988)Kenya7/7P
B.c_group C3o36Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group E5m5Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.thuringiensis Dt7.1.oPlant, leaves of wild mustard (Brassica oleracea) (2005)UK, England, Dorset7/7P
B.c_group C3o28Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.thuringiensis T04b060Animal, Insect, Almond moth (Ephestia cautella/Cadra cautella) (1987)Iraq7/7P


3 isolate(s) sharing MLST alleles in supercluster 5

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus BC_24Food, egg product (2006)Italy (Southern)7/7P
B.cereus BC_1Food, egg product (2006)Italy (Southern)7/7P
B.thuringiensis NRRLB-23152Animal, Insect, Isoptera (2013)UK7/26P


235 isolate(s) sharing MLST alleles in supercluster 6

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus AFS098742Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS043533Plant, Soybean root (2014)USA, Minnesota26/26TH, H, K, CS, P
B.cereus AFS063234Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS080281Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS094460Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS070662Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS070860Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS071044Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS023898Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.cereus AFS061448Soil (2013)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS006012Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS081512Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS054163Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS024693Plant, Weed core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS002848Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS095703Plant, Weed core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS059198Plant, Weed core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS034246Soil (2013)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS060105Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS002094Plant, Corn plant (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS057596Plant, Weed core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS000937Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS093334Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS097327Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS025457Plant, Corn leaf (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS096642Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS075467Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS046340Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS044547Soil (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS073631Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS056399Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS052902Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS073833Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS014598Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS069947Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS068756Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS078211Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS011531Plant, Corn plant (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS024629Soil (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS035044Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS042006Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS046374Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS059650Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS029513Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS029617Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS070964Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS018668Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS068289Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS038688Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS092789Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS009778Soil (2013)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS084075Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS099621Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS093186Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS015939Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS048213Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS051540Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS054833Plant, Weed core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS044880Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis BGSC4AR1SoilChina26/26TH, H, K, CS, P
B.c_group BAG5X12-1SoilUSA, Massachusetts, Boston26/26TH, H, K, CS, P
B.cereus AFS048966Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS006065Soil (2014)USA, New York26/26TH, H, K, CS, P
B.cereus AFS079244Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS070891Plant, Corn (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS068806Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS043896Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS053336Plant, Weed core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS074793Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS071863Plant, Weed core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS017211Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS032567Plant, Corn (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS070947Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS057690Soil (2014)USA, New York26/26TH, H, K, CS, P
B.cereus AFS025653Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS044520Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS095498Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS067935Plant, Weed core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS074515Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS057097Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS087654Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis BGSC4AT1(1986)Japan26/26TH, H, K, CS, P
B.cereus AFS076104Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS009411Plant, Soybean root (2014)USA, Missouri26/26TH, H, K, CS, P
B.cereus AFS017032Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS051634Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS090123Plant, Corn plant (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS038126Plant, Weed core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS017947Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS071440Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS013685Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS088317Soil (2013)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS025349Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS099737Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS048598Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS088704Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS008265Plant, Corn (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS007743Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS045348Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS038041Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS007693Soil (2013)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS008436Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS093925Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.cereus AFS020204Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS048015Plant, tree leaf (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS075408Soil (2013)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS084233Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS001538Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS037512Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS080604Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS003289Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS068876Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS005998Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS045869Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS035954Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS004701Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS030663Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS030742Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS076729Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS018041Soil (2014)USA, New York26/26TH, H, K, CS, P
B.cereus AFS082261Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS023730Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS029679Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS025490Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS072104Soil (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS080164Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS021466Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS030991Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS014136Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS001977Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS001542Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS065770Plant, Weed core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS042863Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS063645Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS080756Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS043359Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS066354Soil (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS042307Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS071251Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS018489Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS030860Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS057502Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS059960Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS053259Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS013997Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS048989Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS026537Plant, Weed core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS083123Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS009035Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS046747Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS039950Soil (2014)USA, New York26/26TH, H, K, CS, P
B.cereus AFS085871Plant, Weed core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS075030Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS040986Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS062062Plant, Core Corn (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS084355Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS082683Plant, Soybean leaf (2014)USA, Illinois26/26TH, H, K, CS, P
B.cereus AFS013880Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS087824Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS095018Plant, Weed core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.c_group BAG4X12-1SoilUSA, Massachusetts, Boston26/26TH, H, K, CS, P
B.cereus AFS045152Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS010831Soil (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS089527Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS015717Plant, Weed core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS076401Soil (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS038754Soil (2013)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS045887(2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS095548Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS093397Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS000524Plant, Weed core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS081367Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS039692Soil (2013)USA, North Carolina25/25K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus AFS001900Plant, Corn plant (2014)USA, North Carolina25/25K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus AFS023720Soil (2013)USA, North Carolina25/25K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus AFS022169Plant, Corn core (2014)USA, North Carolina25/25K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus AFS044532Plant, Corn root (2014)USA, Iowa25/25TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.cereus AFS047280Plant, Corn core (2014)USA, North Carolina25/25K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus AFS011058Plant, Corn plant (2014)USA, North Carolina25/25K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus SJ-S3HumanUSA, Tennessee, Memphis25/25TH, K, CS, P, ftsa, pyre, recf
B.cereus AFS089031Plant, Weed core (2014)USA, North Carolina25/25K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus AFS029052Plant, Weed core (2014)USA, North Carolina25/25K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus AFS016599Plant, Corn (2014)USA, North Carolina25/25K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus AFS032444Plant, Corn core (2014)USA, North Carolina25/26H, K, CS, glpf, gmk, ilvd, pta, purh, tpi
B.cereus AFS081469Plant, Corn core (2014)USA, Illinois25/26H, K, CS, glpf, gmk, ilvd, purh, pyca2, tpi
B.cereus AFS071107Plant, Soybean root (2014)USA, Iowa25/26H, K, CS, glpf, gmk, ilvd, pta, purh, tpi
B.cereus AFS087793Plant, Weed plant (2014)USA, North Carolina25/26H, K, CS, glpf, gmk, ilvd, purh, pyca2, tpi
B.cereus AFS025120Plant, Soybean core (2014)USA, Iowa25/26TH, H, CS, P, gyrb, mbl, mdh, pyca1, rpob
B.cereus AFS036381Plant, Corn core (2014)USA, North Carolina25/26TH, H, K, P, clpc, dinb, gdpd, purf
B.cereus AFS040106Plant, Corn core (2014)USA, North Carolina25/26TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.cereus AFS055648Plant, Corn core (2014)USA, North Carolina25/26TH, H, K, P, clpc, dinb, gdpd, yhfl
B.cereus AFS097377Plant, Corn core (2014)USA, North Carolina25/26TH, H, K, CS, gmk, ilvd, tpi
B.cereus AFS028424Plant, Corn core (2014)USA, North Carolina25/26K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus AFS043413Soil (2014)USA, New York25/26TH, H, K, P, clpc, gdpd, purf, yhfl
B.cereus AFS017068Plant, Corn core (2014)USA, North Carolina25/26TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.cereus AFS088052Plant, Corn core (2014)USA, Illinois25/26TH, H, K, P, dinb, gdpd, purf, yhfl
B.cereus AFS086528Plant, core (2014)USA, North Carolina25/26K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus AFS052400Plant, Corn core (2014)USA, Illinois25/26TH, H, K, P, dinb, gdpd, purf, yhfl
B.cereus AFS073305Plant, Corn core (2014)USA, North Carolina25/26K, CS, P, adk, ftsa, glpt, pyre, recf, succ
B.cereus AFS085674Plant, Corn core (2014)USA, North Carolina25/26TH, K, CS, P, ftsa, pyre, succ
B.cereus AFS008413Soil (2014)USA, New York25/26TH, H, K, CS, gmk, ilvd, tpi
B.cereus AFS009093Plant, Corn core (2014)USA, North Carolina25/26H, K, CS, glpf, gmk, ilvd, purh, pyca2, tpi
B.cereus AFS043837Plant, Corn core (2014)USA, North Carolina25/26TH, H, K, P, dinb, gdpd, purf, yhfl
B.cereus AFS097130Plant, Corn core (2014)USA, North Carolina25/26TH, H, K, P, clpc, dinb, gdpd, yhfl
B.cereus AFS037926Plant, Soybean core (2014)USA, Iowa25/26H, K, CS, glpf, gmk, ilvd, pta, purh, tpi
B.cereus Rock4-2SoilUSA, Maryland, Rockville24/24TH, CS, P, ftsa, mbl, mdh, muts, pyca1, pyre, rpob, succ
B.cereus AFS054178Plant, Corn core (2014)USA, North Carolina24/26K, CS, P, adk, ccpa, ftsa, pyre, recf
B.cereus AFS085606Soil (2014)USA, North Carolina24/26K, P, ccpa, clpc, ftsa, gdpd, glpt, panc, purf, pyre, recf, succ, yhfl
B.cereus AFS011950Plant, Corn core (2014)USA, North Carolina24/26H, CS, glpf, gmk, gyrb, ilvd, mdh, muts, pta, purh, pyca1, rpob, tpi
B.cereus AFS041497Plant, core (2014)USA, North Carolina24/26TH, K, CS, ftsa, ilvd, purh, recf, succ, tpi
B.cereus AFS056025Plant, Corn core (2014)USA, Illinois24/26H, K, clpc, dinb, gdpd, gmk, ilvd, panc, pta, purh, pyca2, tpi, yhfl
B.cereus AFS028351Plant, core (2014)USA, North Carolina23/26CS, P, adk, ftsa, glpt, mdh, muts, pyca1, pyre, recf, rpob, succ
B.thuringiensis BuibuiAnimal, Insect, Coleoptera (2013)UK23/26TH, H, K, clpc, gdpd, ilvd, purf, purh, tpi
B.thuringiensis KNU-07Plant, Ginseng (2015)Korea (South)22/26H, K, clpc, dinb, gmk, ilvd, pta, purf, pyca2, tpi, yhfl
B.cereus AFS088784Plant, Corn core (2014)USA, North Carolina22/26H, K, clpc, gdpd, gmk, panc, pta, purf, pyca2, tpi, yhfl
B.thuringiensis BGSC4CA1 Korea (South)21/26K, P, clpc, ftsa, glpt, panc, pyre, recf, succ, yhfl
B.cereus AFS076596Soil (2014)USA, New York20/26K, CS, ftsa, glpf, gmk, ilvd, pta, pyre, succ, tpi
B.cereus AFS090431Plant, Oats plant (2014)USA, North Carolina20/26K, CS, adk, ccpa, gmk, pyca2, pyre, recf, succ, tpi
B.cereus AFS061148Plant, Weed core (2014)USA, North Carolina17/26P, ccpa, gdpd, muts, purf, pyca1, pyre, recf, rpob, succ, yhfl
B.cereus AFS010272Plant, Corn core (2014)USA, Illinois17/26H, clpc, dinb, glpf, gmk, mbl, mdh, purf, pyca1, rpob, tpi
B.thuringiensis ST7  16/26K, P, ftsa, gdpd, yhfl
B.cereus AFS062641Plant, core (2014)USA, North Carolina15/26K, ccpa, dinb, ftsa, glpt, pta, purf, purh, recf, succ
B.cereus AFS018281Plant, Corn core (2014)USA, North Carolina14/26K, adk, dinb, ilvd, pta, purh, recf, succ, tpi
B.cereus AFS058833Plant, Corn core (2014)USA, North Carolina14/26K, ftsa, glpt, pyca2, pyre, recf, succ, tpi, yhfl
B.cereus HB11BC185Food packaging (2011)China, Hebei Province7/7P
B.c_group KW35[Children-s Hospital Oakland Research Institute (CHORI)]USA, California7/7P
B.cereus S6625Soil (2007)USA, Maryland, Rockville7/7P
B.thuringiensis BGSC4D12Animal, Insect, Almond moth (Ephestia cautella/Cadra cautella)UK, England7/7P
B.cereus S6630Soil (2007)USA, Maryland, Rockville7/7P
B.c_group KW29[Children-s Hospital Oakland Research Institute (CHORI)]USA, California7/7P
B.c_group KW61[Children-s Hospital Oakland Research Institute (CHORI)]USA, California7/7P
B.cereus 2004721590Soil, mud (2004)USA, Georgia7/7P
B.c_group 20166Food (2013)China7/7P
B.cereus S6639Soil (2007)USA, Maryland, Rockville7/7P
B.cereus 2004721589Soil, mud (2004)USA, Georgia7/7P


117 isolate(s) sharing MLST alleles in supercluster 7

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus FSLR5-0811Dairy products, pasteurized milk (2006)USA26/26TH, H, K, CS, P
B.weihenstephanensis FSLR5-860Dairy products, pasteurized milk (2006)USA26/26TH, H, K, CS, P
B.cereus FSLM8-0473(2015)USA26/26TH, H, K, CS, P
B.cereus FORC024Food, chicken soupKorea (South), Incheon26/26TH, H, K, CS, P
B.cereus BDRD-Cer4[Biological Defense Research Directorate (BDRD)]USA, Maryland, Rockville26/26TH, H, K, CS, P
B.cereus AFS012400Plant, Cucumber plant (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus 16-00196  26/26TH, H, K, CS, P
B.cereus AH725Human, eye (1995)Norway, Skien26/26TH, H, K, CS, P
B.cereus B4155Food (2013)Netherlands26/26TH, H, K, CS, P
B.c_group VD045SoilGreenland26/26TH, H, K, CS, P
B.cereus 16SBCL1279Human, Breast milk (2016)France, Ile-de-France Lactarium, Paris26/26TH, H, K, CS, P
B.cereus AFS011918Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus FORC021Other, KnifeKorea (South), Ulsan26/26TH, H, K, CS, P
B.cereus AFS053406Plant, Corn plant (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis Pasteur_Standard[two complete genomes sequenced for this strain with identical MLST sequences] 25/26TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.cereus BHU1Soil, Cropfield soil (2016)India25/26TH, H, K, P, clpc, dinb, gdpd, yhfl
B.cereus MOD1Bc92Food, Whole Black Pepper (2015)USA, Maryland25/26TH, H, CS, P, mbl, mdh, muts, pyca1, rpob
B.cereus F4430/73Other, pea soup or faeces/stools (1973) [diarrheal food poisoning outbreak]Belgium25/26TH, H, K, P, clpc, dinb, gdpd, purf
B.cereus MOD1Bc218Other, Baby Wipes (2016)USA, Maryland25/26K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus LK9(2010)Malaysia, Malacca25/26TH, H, CS, P, gyrb, mbl, mdh, pyca1, rpob
B.cereus SJ-S27HumanUSA, Tennessee, Memphis25/26TH, H, K, CS, gmk, purh, tpi
B.cereus A8S3Other, Sediments (2003)Pacific Ocean25/26TH, H, CS, P, gyrb, mbl, mdh, pyca1, rpob
B.cereus 16-00198  25/26TH, H, K, P, clpc, dinb, gdpd, yhfl
B.cereus AFS070416Plant, core (2014)USA, North Carolina25/26TH, H, K, P, dinb, gdpd, purf, yhfl
B.c_group VD169SoilUAE, Dubai25/26TH, K, CS, P, ftsa, pyre, succ
B.cereus INRAC3Food, pasteurized carrot (1996) (1996)France, Vaucluse25/26TH, H, K, P, dinb, gdpd, purf, yhfl
B.cereus Co15Other, Sediments (2003)Pacific Ocean24/26K, P, adk, clpc, dinb, ftsa, gdpd, glpt, panc, pyre, recf, succ, yhfl
B.c_group VD166SoilUAE, Dubai24/26TH, H, K, P, dinb, gdpd, yhfl
B.cereus B4081Food (2013)Netherlands24/26TH, H, P, clpc, dinb, gdpd, gyrb, mbl, mdh, purf, pyca1, rpob
B.cereus 16-00184  24/26TH, H, P, clpc, dinb, gdpd, gyrb, mdh, muts, purf, pyca1, rpob
B.cereus FSLK6-1030Dairy products, condensed milk (2013)USA24/26TH, H, K, P, clpc, dinb, gdpd
B.cereus MOD1Bc230Food, food product (2016)USA, Maryland24/26TH, H, P, clpc, gdpd, mbl, mdh, muts, purf, pyca1, rpob, yhfl
B.cereus C1LSoil or plant, rhizosphere (2003)Taiwan, Taroko National Park, Hualien23/25H, K, clpc, dinb, gdpd, glpf, gmk, ilvd, purf, purh, pyca2, yhfl
B.cereus SJ-S23HumanUSA, Tennessee, Memphis23/25TH, K, clpc, dinb, gdpd, gmk, purf, purh, pyre, recf, succ, tpi
B.cereus B4120Food (2013)Netherlands23/26TH, H, P, clpc, dinb, gdpd, mbl, muts, pyca1, rpob, yhfl
B.thuringiensis T69001 Malaysia23/26TH, K, P, clpc, dinb, ftsa, purf, pyre, succ
B.cereus ATCC14579Other, Farm, cow-shed air (1916)USA23/26TH, K, CS, ftsa, ilvd, purh, recf, succ
B.cereus Rock1-15SoilUSA, Maryland, Rockville22/26K, P, adk, clpc, dinb, ftsa, gdpd, glpt, panc, recf, succ
B.cereus E41Other, salt lake (2016)Algeria, Ain Mlila-Oum El Bouaghi22/26H, clpc, dinb, gdpd, gmk, gyrb, ilvd, mbl, muts, panc, pta, purh, pyca1, pyca2, rpob, tpi
B.cereus MOD1Bc86Food, Whole Black Pepper (2015)USA, Maryland22/26TH, H, clpc, dinb, gdpd, gmk, gyrb, ilvd, mdh, muts, purh, pyca1, rpob
B.thuringiensis BGSC4BW1 Spain22/26H, P, clpc, dinb, gdpd, gyrb, mbl, muts, pyca1, rpob
B.cereus MOD1Bc85Food, Ground Black Pepper (2015)USA, Maryland21/26K, adk, dinb, ftsa, gdpd, glpf, glpt, gmk, panc, purf, purh, pyca2, pyre, recf, succ, tpi
B.cereus SJ-S9HumanUSA, Tennessee, Memphis20/20TH, CS, ilvd, mbl, mdh, purh, recf, rpob, succ, tpi
B.thuringiensis BGSC4H2(1968)Canada20/26TH, clpc, dinb, ftsa, gdpd, gyrb, ilvd, mbl, mdh, purh, pyca1, recf, rpob, succ
B.thuringiensis BGSC4CF1 Malaysia19/26K, adk, clpc, dinb, glpf, glpt, gmk, ilvd, panc, pta, purh, pyca2, pyre, succ
B.c_group VD196SoilUAE, Dubai18/26H, dinb, gmk, gyrb, ilvd, mbl, mdh, panc, pyca1, pyca2, rpob, tpi
B.c_group AH716Human, pusNorway, Skien11/11TH, H
B.c_group AH1294Human, bloodNorway, Tromsoe11/11TH, H
B.c_group AH889Human, bloodNorway11/11TH, H
B.c_group AH1293Human, bloodNorway, Tromsoe11/11TH, H
B.c_group AH726Human, urineNorway, Skien11/11TH, H
B.c_group K15_115(2014)Korea (South)7/7P
B.cereus R_2955/03Human, blood (2003) [human septicaemia]UK, England7/7P
B.thuringiensis T09010(1979)USA7/7P
B.cereus B548  7/7P
B.cereus BC_32Food, ready-to-eat product (2006)Italy (Northwestern)7/7P
B.cereus 108229.NHuman, wound infection (2004)UK, Scotland7/7P
B.cereus NC1292Food, rice (1999)Japan7/7P
B.cereus CBC_99006Human, diarrheaJapan7/7P
B.c_group BC00001Dairy products, milk products (2017)Italy, Apulia7/7P
B.cereus 134070.JHuman, wound infection (2004)UK, Scotland7/7P
B.cereus Sve1Human, blood (2003)Italy7/7P
B.c_group FSLR5-0859Dairy products, milk products (2006)USA7/7P
B.cereus XA12-18Dairy products, milk products (2012)China7/7P
B.cereus F6722Food (1985) [diarrheal food poisoning]USA, Alabama7/7P
B.cereus R_3149/03Human, blood (2003) [human septicaemia]UK, England7/7P
B.cereus NC1225Human, faeces/stools (1996)Japan7/7P
B.thuringiensis BGSC4L5(1990) [sequences conflicting with isolate T09020]Italy7/7P
B.cereus 149041.SHuman, wound infection (2004)UK, Scotland7/7P
B.thuringiensis T09052Other, spider web (1999)Canada7/7P
B.thuringiensis T09011Animal, Insect, Lepidoptera (1987)Iraq7/7P
B.c_group MCCC1A00495Other, sediments (2005)Pacific Ocean7/7P
B.c_group MCCC1A06185Other, middle seawater (2009)Pacific Ocean7/7P
B.cereus CBC_03004Human, diarrheaJapan7/7P
B.c_group K14_4528(2014)Korea (South)7/7P
B.cereus BC_5Food, egg product (2006)Italy (Southern)7/7P
B.c_group MCCC1A06184Other, surface seawater (2009)Pacific Ocean7/7P
B.cereus NC499Food (1983)Japan7/7P
B.cereus LFB541Food, Rice cream (1982)Brazil7/7TH
B.c_group MCCC1A01400Other, sediments (2006)Indian Ocean7/7P
B.cereus F2668/90Food, lamb (1990) [diarrheal food poisoning outbreak]Netherlands7/7P
B.cereus S6566Soil (2007)USA, Maryland, Rockville7/7P
B.c_group MCCC1A00432Other, sediments (2005)Pacific Ocean7/7P
B.cereus 2003-I-1254Human, blood (2003) [human, fatal]USA, Oregon7/7P
B.cereus BGSC6A42Food packaging [sequences conflicting with isolate TSP8] 7/7P
B.cereus 200593.XHuman, wound infection (2004)UK, Scotland7/7P
B.thuringiensis T09034(1992)Brazil7/7P
B.cereus K15-3447Human, faeces/stools (2015)Korea (South)7/7P
B.cereus BFDA96117Food (2007)Taiwan, Taoyuan county7/7P
B.cereus F99/5941Other, environmental (1999) [food-water-environment survey isolate] 7/7P
B.c_group MCCC1A08490Other, sediments (2011)Arctic Ocean7/7P
B.c_group MCCC1A01874Other, sediments (2006)Pacific Ocean7/7P
B.c_group MCCC1A00298Other, sediments (2006)Pacific Ocean7/7P
B.cereus BC_17Food, egg product (2006)Italy (Southern)7/7P
B.cereus BC_29Food, ready-to-eat product (2006)Italy (Northwestern)7/7P
B.c_group MCCC1A00418Other, sediments (2005)Pacific Ocean7/7P
B.cereus EFBC85Food (2017)Austria7/7P
B.thuringiensis IBL695Soil (1976)Hawaii7/7P
B.thuringiensis T09024(1991)Indonesia7/7P
B.c_group MCCC1A06183Other, bottom seawater (2009)Pacific Ocean7/7P
B.cereus 177147.YHuman, wound infection (2005)UK, Scotland7/7P
B.cereus BFDA96166Food, rice (2007)Taiwan, Taipei county7/7P
B.c_group MCCC1A00360Other, sediments (2006)Pacific Ocean7/7P
B.cereus BFDA95192(2006)Taiwan, Taipei county7/7P
B.cereus D8096Human, blood (1971)USA, Louisiana7/7P
B.c_group MCCC1A08292Other, sediments (2011)Arctic Ocean7/7P
B.cereus 2003-I-1253Human, blood (2003) [human septicaemia, fatal]USA, Oregon7/7P
B.c_group MCCC1A04083Other, surface seawater (2009)Pacific Ocean7/7P
B.thuringiensis BGSC4L1Animal, Insect, Almond moth (Cadra cautella) [sequences conflicting with isolate HD125]UK, England7/7P
B.cereus 000-843-51Human, blood (2004) [human pneumonia]Japan7/7P
B.cereus G2008Human, faeces/stools (1988) [food poisoning]USA, Pennsylvania7/7P
B.thuringiensis BGSC4L2Animal, Insect, Almond moth (Ephestia cautella/Cadra cautella)UK, England7/7P
B.cereus BC_9Food, egg product (2006)Italy (Southern)7/7P
B.cereus 201183.DHuman, wound infection (2003)UK, Scotland7/7P
B.cereus 653-154-7Human, blood (2003) [human pneumonia]Japan7/7P
B.cereus HF16Food (2014)Germany, Berlin7/7P
B.cereus B06_036Human, bloodTahiti, Papeete7/7TH


3 isolate(s) sharing MLST alleles in supercluster 8

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus MOD1Bc69Food, Paprika (2015)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc18Plant, Sesame Seed White (2015)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc75Plant, Sesame Seed (2015)USA, Maryland26/26TH, H, K, CS, P


71 isolate(s) sharing MLST alleles in supercluster 9

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.thuringiensis HD521Soil, soybean fieldUSA, Indiana26/26TH, H, K, CS, P
B.thuringiensis GOE4#1Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)Germany, Goettingen26/26TH, H, K, CS, P
B.c_group BAG4O-1SoilUSA, Massachusetts, Boston26/26TH, H, K, CS, P
B.cereus AFS041041Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS096226Plant, Soybean leaf (2013)USA, Minnesota26/26TH, H, K, CS, P
B.cereus AFS001073Plant, Weed leaf (2014)USA, Ohio26/26TH, H, K, CS, P
B.c_group BAG3O-2SoilUSA, Massachusetts, Boston26/26TH, H, K, CS, P
B.cereus AFS072350Plant, Soybean leaf (2013)USA, Minnesota26/26TH, H, K, CS, P
B.cereus AFS064975(2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS097474Plant, Weed leaf (2014)USA, Indiana26/26TH, H, K, CS, P
B.cereus AFS002102Plant, Soybean leaf (2013)USA, Minnesota26/26TH, H, K, CS, P
B.cereus AFS015304Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS011006Plant, Soybean leaf (2013)USA, Minnesota26/26TH, H, K, CS, P
B.cereus AFS002530Plant, Weed leaf (2014)USA, Ohio26/26TH, H, K, CS, P
B.cereus tsu1Other, contaminated cellulose-agar plate (2009)USA, Tennessee, Nashville26/26TH, H, K, CS, P
B.cereus LCR12Plant, karkalla (Carpobrotus rossii) (2014) [from Cadmium-contaminated soil]Australia, Melbourne26/26TH, H, K, CS, P
B.cereus AFS016365Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS034541Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS003410Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.cereus AFS009734Plant, Weed core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus K8#2Food, Korean fermented food (2016)Korea (South)26/26TH, H, K, CS, P
B.cereus AFS033276Plant, tree leaf (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS063157Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS060282Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus FSLW8-0767Other, Sifter powder (2012)USA, New York26/26TH, H, K, CS, P
B.cereus AFS029029Plant, Corn (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS051626Plant, Weed leaf (2014)USA, Indiana26/26TH, H, K, CS, P
B.cereus AFS093833Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS003807Plant, Corn core (2014)USA, North Carolina25/26TH, H, K, P, clpc, dinb, gdpd, purf
B.thuringiensis BGSC4BF1 Germany25/26TH, H, K, P, dinb, gdpd, purf, yhfl
B.cereus AFS070889Plant, Corn core (2014)USA, North Carolina25/26TH, H, K, P, clpc, dinb, gdpd, yhfl
B.thuringiensis INTAFr7-4SoilArgentina, Misiones25/26TH, H, K, P, clpc, dinb, gdpd, purf
B.cereus AFS086321Plant, core (2014)USA, North Carolina25/26H, K, P, clpc, dinb, gdpd, purf, yhfl
B.cereus SJ-S19HumanUSA, Tennessee, Memphis24/24TH, H, K, clpc, dinb, gdpd, gmk, ilvd, tpi, yhfl
B.cereus 172560.WHuman, burn wound (2003) [human wound infection]UK, Scotland, Glasgow24/26TH, H, K, P, clpc, gdpd, purf
B.cereus MOD1Bc57Other, Baby Wipes (2016)USA, Maryland24/26H, K, CS, gmk, ilvd, purh, pyca2, tpi
B.cereus AFS024973Plant, core (2014)USA, North Carolina24/26H, CS, gmk, gyrb, ilvd, mdh, muts, pta, purh, pyca1, pyca2, rpob, tpi
B.cereus MOD1Bc139Food, Dietary Supplements (2015)USA, Maryland24/26TH, H, P, dinb, gdpd, gyrb, mdh, muts, purf, pyca1, rpob, yhfl
B.cereus AFS099102Plant, Weed leaf (2014)USA, Indiana24/26TH, H, K, clpc, dinb, gdpd, gmk, ilvd, purf, tpi
B.cereus SJ-S22  23/23P, ccpa, dinb, ftsa, gdpd, glpt, gyrb, mbl, mdh, muts, panc, purf, pyca1, pyre, recf, succ, yhfl
B.cereus AFS041581Plant, Soybean root (2014)USA, Missouri22/26P, adk, clpc, dinb, ftsa, gdpd, glpt, gyrb, mdh, muts, purf, pyca1, pyre, rpob, succ, yhfl
B.cereus A1Other, sludge of an anaerobic digestion reactor (2011) [efficient starch-utilizing producer of hydrogen]China, Beijing21/26K, P, adk, ccpa, ftsa, panc, pyre, recf, succ, yhfl
B.cereus AH1134Human, eye [pediatric endophthalmitis case]USA, Oklahoma21/26TH, H, K, dinb, gdpd, purf, tpi
B.cereus SJ-S5HumanUSA, Tennessee, Memphis20/24K, adk, ccpa, clpc, dinb, glpf, glpt, gmk, ilvd, pta, purf, purh, pyre, recf, succ
B.cereus SJ-S10HumanUSA, Tennessee, Memphis20/24K, adk, ccpa, clpc, ftsa, gdpd, glpf, glpt, ilvd, pta, purf, pyca2, pyre, recf, tpi
B.cereus AFS093276Plant, core (2014)USA, North Carolina20/26P, adk, dinb, ftsa, gdpd, glpt, gyrb, mdh, muts, purf, pyre, recf, rpob, succ
B.cereus SJ-S29HumanUSA, Tennessee, Memphis20/26K, ccpa, ftsa, gdpd, glpt, gmk, ilvd, panc, pta, purf, purh, pyca2, pyre, succ, tpi
B.thuringiensis DB27[highly nematicidal] 17/26K, P, ftsa, glpt, purf, recf
B.c_group AH1129Human, eyeUSA, Oklahoma11/11TH, H
B.thuringiensis 2008724754Animal, Insect, dung beetle (2009)Germany7/7P
B.thuringiensis IBL3576Soil (1983)USA, Pennsylvania7/7P
B.thuringiensis 2008724756Animal, Insect, dung beetle (2009)Germany7/7P
B.thuringiensis 2008724755Animal, Insect, dung beetle (2009)Germany7/7P
B.c_group K14_5491(2014)Korea (South)7/7P
B.c_group C3g6Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.cereus B06_034HumanFrance7/7TH
B.cereus F95/2410Human, gangrene, cellulitis; Public Health Laboratory (1995)UK, Wales, Cardiff7/7P
B.thuringiensis HD516Soil, soybean fieldUSA7/7P
B.cereus E1149Human, lung (1978)USA, Missouri7/7P
B.cereus 101937.QHuman, wound infection (2004)UK, Scotland7/7P
B.c_group KW38[Children-s Hospital Oakland Research Institute (CHORI)]USA, California7/7P
B.cereus 140936.SHuman, wound infection (2004)UK, Scotland7/7P
B.thuringiensis T13028Soil (1993)Chile7/7P
B.thuringiensis IBL77Soil (1988)USA, Wyoming7/7P
B.c_group KW22[Children-s Hospital Oakland Research Institute (CHORI)]USA, California7/7P
B.cereus 180215.FHuman, wound infection (2004)UK, Scotland7/7P
B.thuringiensis 2013746963Human, blood (2013) [human vomiting]USA, California, San Diego7/7P
B.c_group Wang  7/7P
B.thuringiensis IBL673Soil (1987)USA, New Hampshire7/7P
B.cereus S6637Soil (2007)USA, Maryland, Rockville7/7P
B.c_group FSLM8-0139Dairy products, milk products (2012)USA7/7P


209 isolate(s) sharing MLST alleles in supercluster 10

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.anthracis 2000032989  26/26TH, H, K, CS, P
B.anthracis Ba-7673/89-GeoSoil (1989)Georgia26/26TH, H, K, CS, P
B.anthracis KrugerB[pXO1+/pXO2+]South Africa, Kruger National Park26/26TH, H, K, CS, P
B.anthracis 2000032975(1966) 26/26TH, H, K, CS, P
B.anthracis 3166SoilBulgaria26/26TH, H, K, CS, P
B.anthracis Ba-8784/92-GeoFood, Beef (1992)Georgia26/26TH, H, K, CS, P
B.anthracis BA1004(2000) [pXO1+/pXO2+]USA, Texas26/26TH, H, K, CS, P
B.anthracis CZC5Animal, Hippopotamus tissues (2011) [from hippopotamuses that had died during an anthrax outbreak]Zambia26/26TH, H, K, CS, P
B.anthracis K3Human [pXO1+/pXO2+]South Africa26/26TH, H, K, CS, P
B.anthracis A16[pXO1+/pXO2+] 26/26TH, H, K, CS, P
B.anthracis K4516Animal, cattle (Bovine) (1939) [pXO1+/pXO2+]USA, Maryland26/26TH, H, K, CS, P
B.anthracis A1144[pXO1+/pXO2+; shows mucoid colony morphology]Argentina26/26TH, H, K, CS, P
B.anthracis A0021Animal, Hippopotamus (1997)Zambia, Western Province26/26TH, H, K, CS, P
B.anthracis 2000032967  26/26TH, H, K, CS, P
B.anthracis A1075Animal, cattle [pXO1+/pXO2+]Chile, Lago Ranco-Valdivia Agricola Quillin Va. Region26/26TH, H, K, CS, P
B.anthracis K2883Human (1997)India26/26TH, H, K, CS, P
B.anthracis K2129(1997)China, Changping26/26TH, H, K, CS, P
B.anthracis BA1035Human, Clinical [pXO1+/pXO2+]South Africa26/26TH, H, K, CS, P
B.anthracis Ames[pXO1-/pXO2-; Ames strain cured of the pXO1 and pXO2 plasmids at UK Defence Science and Technology Laboratory]UK, England, Porton Down26/26TH, H, K, CS, P
B.anthracis HYU01Soil (2009) [pXO1+/pXO2+]Korea (South), Changnyeong26/26TH, H, K, CS, P
B.anthracis 52-GAnimal, cattle (bovine) (2009) [pXO1+/pXO2+]Georgia, Tbilisi26/26TH, H, K, CS, P
B.anthracis PR09-4 USA26/26TH, H, K, CS, P
B.anthracis PasteurAnimal, cat [pXO1-/pXO2+] 26/26TH, H, K, CS, P
B.anthracis Kafkas-149Soil (2012)Turkey, Selim26/26TH, H, K, CS, P
B.anthracis 2002013094Soil (1956) [pXO1+/pXO2+; two complete genomes sequenced for this strain with identical MLST sequences]USA26/26TH, H, K, CS, P
B.anthracis Sterne USA26/26TH, H, K, CS, P
B.anthracis 721  26/26TH, H, K, CS, P
B.anthracis K3974(1995)Slovakia26/26TH, H, K, CS, P
B.anthracis 2000031039Animal, cattle (1957) 26/26TH, H, K, CS, P
B.anthracis A16R[attenuated variant of strain A16; pXO1+/pXO2-] 26/26TH, H, K, CS, P
B.anthracis ANSES101  26/26TH, H, K, CS, P
B.anthracis A1055[belongs to the divergent C branch; pXO1-/pXO2+]USA, Louisiana26/26TH, H, K, CS, P
B.anthracis ANSES118  26/26TH, H, K, CS, P
B.anthracis Tangail-1Soil (2012)Bangladesh, Tangail26/26TH, H, K, CS, P
B.anthracis P417  26/26TH, H, K, CS, P
B.anthracis Vollum1BHuman (1951) [weaponized Vollum substrain used in American warheads during the 1960-s; pXO1+/pXO2+]USA26/26TH, H, K, CS, P
B.anthracis A0389#2[pXO1+/pXO2+; two complete genomes sequenced for this strain with different MLST sequences; strain sequenced by Biosurveillance, MRIGlobal, Palm Bay, Florida, USA; sequences conflicting with isolate A0389#1]Indonesia, West Java, Bekasi26/26TH, H, K, CS, P
B.anthracis 663  26/26TH, H, K, CS, P
B.anthracis 2000031027Animal, cattle (1957)USA, Oklahoma26/26TH, H, K, CS, P
B.anthracis 2000032951Human (1958) 26/26TH, H, K, CS, P
B.anthracis ANSES32  26/26TH, H, K, CS, P
B.anthracis Ba-8785/92-GeoHuman, Patient ulcer (1992)Georgia26/26TH, H, K, CS, P
B.anthracis K1Soil (2014)Namibia, Etosha National Park26/26TH, H, K, CS, P
B.anthracis BFV[pXO1+/pXO2+] 26/26TH, H, K, CS, P
B.anthracis SVA11Animal, cattle (2011) [from an outbreak in cattle that occurred in a Swedish nature reserve; pXO1+/pXO2+]Sweden26/26TH, H, K, CS, P
B.anthracis 55-VNIIVViMOther, Commercial vial (2014)Georgia, Tbilisi26/26TH, H, K, CS, P
B.anthracis WestNAAnimal, Bison [pXO1+/pXO2+]Canada26/26TH, H, K, CS, P
B.anthracis ANSES08-8_20Animal, cattle (bovine) (2008)France, Doubs26/26TH, H, K, CS, P
B.anthracis A.Br.003Human, child cutaneous anthraxUK, Scotland, Dundee26/26TH, H, K, CS, P
B.anthracis PR10-4 USA26/26TH, H, K, CS, P
B.anthracis 3154SoilBulgaria26/26TH, H, K, CS, P
B.anthracis 9080-GSoil (1998) [pXO1+/pXO2+]Georgia, Gardabani26/26TH, H, K, CS, P
B.anthracis Vollum[this strain is used in research studies and is found in the UK, Spain, and Zimbabwe; pXO1+/pXO2+; two complete genomes sequenced for this strain with identical MLST sequences] 26/26TH, H, K, CS, P
B.anthracis H9401Human, cutaneous anthrax patient [pXO1+/pXO2+]Korea (South)26/26TH, H, K, CS, P
B.anthracis Parent2 USA26/26TH, H, K, CS, P
B.anthracis Kafkas-60Animal, Sheep (2006)Turkey, Arpacay26/26TH, H, K, CS, P
B.anthracis 95014[pXO1+/pXO2-] 26/26TH, H, K, CS, P
B.anthracis Kafkas-68Animal, Cattle (2007)Turkey, Kars26/26TH, H, K, CS, P
B.anthracis Canadian_bisonAnimal, Bison [pXO1+/pXO2+]Canada26/26TH, H, K, CS, P
B.anthracis Shikan-NIIDAnimal, horse (1928) [pXO1+/pXO2+; two complete genomes sequenced for this strain with identical MLST sequences]Japan, Tokyo26/26TH, H, K, CS, P
B.anthracis Ba-1897/12-GeoFood, Beef (2012)Georgia26/26TH, H, K, CS, P
B.anthracis A0157Animal, Pig (1996) [derived from strain ATCC4728; pXO1-/pXO2+]USA26/26TH, H, K, CS, P
B.anthracis Parent1 USA26/26TH, H, K, CS, P
B.anthracis 781  26/26TH, H, K, CS, P
B.anthracis A0465Animal, cattle (Cow), spleen (1997) [two complete genomes sequenced for this strain with identical MLST sequences; pXO1+/pXO2+]France, Pyrenees mountains26/26TH, H, K, CS, P
B.anthracis 500  26/26TH, H, K, CS, P
B.anthracis PR07 USA26/26TH, H, K, CS, P
B.anthracis K8215[pXO1+/pXO2+]Argentina26/26TH, H, K, CS, P
B.anthracis PR02 USA26/26TH, H, K, CS, P
B.anthracis Kafkas-86Animal, Cattle (2006)Turkey, Kars26/26TH, H, K, CS, P
B.anthracis 2000031765  26/26TH, H, K, CS, P
B.anthracis PR08 USA26/26TH, H, K, CS, P
B.anthracis ANSES92  26/26TH, H, K, CS, P
B.anthracis 4599Human, Scottish heroin user (2009)UK, Scotland, Glasgow26/26TH, H, K, CS, P
B.anthracis Ba-9108/08-GeoHuman, Patient ulcer (2008)Georgia26/26TH, H, K, CS, P
B.anthracis 44-NIAH[pXO1+/pXO2+; two complete genomes sequenced for this strain with identical MLST sequences] 26/26TH, H, K, CS, P
B.anthracis K0021Animal, Sheep (1995)Italy26/26TH, H, K, CS, P
B.anthracis PR01 USA26/26TH, H, K, CS, P
B.anthracis PollinoAnimal, cattle (bovine) carcass (2014) [from a bovine anthrax-burial site; pXO1+/pXO2+]Italy, Pollino National Park, Basilicata26/26TH, H, K, CS, P
B.anthracis K1285[pXO1+/pXO2+]Namibia26/26TH, H, K, CS, P
B.anthracis CDC684[originally labeled B.megaterium; shows significant attenuation of virulence; pXO1+/pXO2+] 26/26TH, H, K, CS, P
B.anthracis AmesAncAnimal, cattle (Cow) (1981) [this strain is the progenitor of all the Ames strains used as research tools in laboratories around the world; pXO1+/pXO2+]USA, Texas, Sarita26/26TH, H, K, CS, P
B.anthracis Ba-8782/92-GeoAnimal, Sheepskin (1992)Georgia26/26TH, H, K, CS, P
B.anthracis StendalAnimal, cattle (bovine) (Bos bovis) (2012)Germany, Saxony-Anhalt26/26TH, H, K, CS, P
B.anthracis 2000031075Animal, cattleSouth Africa26/26TH, H, K, CS, P
B.anthracis 2000031038(1957) 26/26TH, H, K, CS, P
B.anthracis Ba-8884/94-GeoHuman, Patient ulcer (1994)Georgia26/26TH, H, K, CS, P
B.anthracis ANSES122  26/26TH, H, K, CS, P
B.anthracis BF1Animal, cattle (cow) carcass (2009) [from a cow that had succumbed to anthrax; pXO1+/pXO2+]Germany, Bavaria26/26TH, H, K, CS, P
B.anthracis 2000032968  26/26TH, H, K, CS, P
B.anthracis ANSES86  26/26TH, H, K, CS, P
B.anthracis Sen3 Senegal26/26TH, H, K, CS, P
B.anthracis ANSES89  26/26TH, H, K, CS, P
B.anthracis ANSES88  26/26TH, H, K, CS, P
B.anthracis 2000032819  26/26TH, H, K, CS, P
B.anthracis PR06 USA26/26TH, H, K, CS, P
B.anthracis Ba-9065/08-GeoHuman, Patient ulcer (2008)Georgia26/26TH, H, K, CS, P
B.anthracis Carbosap[attenuated, toxigenic, capsulated strain; shows significant attenuation of virulence; used in Italy as a live spore vaccine for cattle and sheep; pXO1+/pXO2+; two complete genomes sequenced for this strain with identical MLST sequences between]Somalia, Asmara, Institute Vacci nogeno or Italy, Rome26/26TH, H, K, CS, P
B.anthracis 2000032979 USA, New Jersey26/26TH, H, K, CS, P
B.anthracis TI[Soviet Union livestock vaccine strain; pXO1+/pXO2+]USSR26/26TH, H, K, CS, P
B.anthracis 2000032832  26/26TH, H, K, CS, P
B.anthracis K2Soil (2014)Namibia, Etosha National Park26/26TH, H, K, CS, P
B.anthracis K1129Animal, goat hair (1995)Pakistan26/26TH, H, K, CS, P
B.anthracis Turkey32Human, skin (1991) [pXO1+/pXO2+]Turkey, Yozgat26/26TH, H, K, CS, P
B.anthracis Kafkas-215Soil (2014)Turkey, Selim26/26TH, H, K, CS, P
B.anthracis Ba-8776/92-GeoHuman, Patient ulcer (1992)Georgia26/26TH, H, K, CS, P
B.anthracis Kafkas-100Soil (2009)Turkey, Digor26/26TH, H, K, CS, P
B.anthracis FDAARGOS341Other, Colorado Serum Co., Anthrax Spore Vaccine (2015) 26/26TH, H, K, CS, P
B.anthracis Sterne34F2Animal, cattle (cow) (1937) [Animal vaccine strain; pXO1+/pXO2-; two complete genomes sequenced for this strain with identical MLST sequences]South Africa26/26TH, H, K, CS, P
B.anthracis A0463Animal, sheep (1978) [reported as pXO1+/pXO2+ but no pXO2 sequence in genome]Pakistan26/26TH, H, K, CS, P
B.anthracis PR05 USA26/26TH, H, K, CS, P
B.anthracis DS201579Animal, Blue Wildebeest (Connochaetes taurinus) (2015)South Africa, Kruger National Park, Pafuri26/26TH, H, K, CS, P
B.anthracis P482  26/26TH, H, K, CS, P
B.anthracis Sen2Col2 Senegal26/26TH, H, K, CS, P
B.anthracis 2000031008 USA, Alabama26/26TH, H, K, CS, P
B.anthracis A1039Animal, cattle (1999)Bolivia, Santa Cruz26/26TH, H, K, CS, P
B.anthracis deltaSterne[pXO1-/pXO2-] 26/26TH, H, K, CS, P
B.anthracis CNEVAHuman [pXO1+/pXO2+]France (Southern)26/26TH, H, K, CS, P
B.anthracis ANSES94  26/26TH, H, K, CS, P
B.anthracis 2000031031Human (1957)USA, Massachusetts26/26TH, H, K, CS, P
B.anthracis Tyrol4675Animal, cattle (Cow) (1988)Austria, Tyrol26/26TH, H, K, CS, P
B.anthracis K4834Animal, cattle (Bovine) (1997)Australia26/26TH, H, K, CS, P
B.anthracis STI-1[vaccine strain; pXO1+/pXO2-]Russia26/26TH, H, K, CS, P
B.anthracis ANSES00-82Animal, cattle (bovine) (2000)France, Savoie26/26TH, H, K, CS, P
B.anthracis Australia94Animal, cattle (Bovine) (1994) [pXO1+/pXO2+]Australia, Victoria Province26/26TH, H, K, CS, P
B.anthracis 52-40-NIAHAnimal, horse (1940) [pXO1+/pXO2+; two complete genomes sequenced for this strain with identical MLST sequences]China26/26TH, H, K, CS, P
B.anthracis A0248Human (1968) [pXO1+/pXO2+]USA, Ohio26/26TH, H, K, CS, P
B.anthracis 2000031709(1956)USA, Carolinas26/26TH, H, K, CS, P
B.anthracis 14RA5914Animal, cattle (bovine) (Bos primigenius taurus) spleen (2014)Germany, Dobichau26/26TH, H, K, CS, P
B.anthracis 2000031023Animal, cattle (1957) 26/26TH, H, K, CS, P
B.anthracis FloridaHuman [from bioterror mailing attacks in 2001; pXO1+/pXO2+]USA, Florida26/26TH, H, K, CS, P
B.anthracis ATCC14185Animal, cattle (bovine) (1951) [United States Human Vaccine strain; pXO1+/pXO2-; two complete genomes sequenced for this strain with identical MLST sequences]USA, Florida26/26TH, H, K, CS, P
B.anthracis PR09-1 USA26/26TH, H, K, CS, P
B.anthracis 2000031006(1956)USA, New Mexico26/26TH, H, K, CS, P
B.anthracis SPV842_15Animal, cattle (bovine) (Bos taurus) liver [from bovine aborted fetus] (2015)Brazil26/26TH, H, K, CS, P
B.anthracis STI1Other, laboratory strain (1970) [vaccine strain; pXO1+/pXO2-]Russia, Saratov26/26TH, H, K, CS, P
B.anthracis Kafkas-78Animal, Cattle (2008)Turkey, Kars26/26TH, H, K, CS, P
B.anthracis Smith1013[pXO1-/pXO2+] 26/26TH, H, K, CS, P
B.anthracis Gmb1 Gambia26/26TH, H, K, CS, P
B.anthracis A0389#1[pXO1+/pXO2+; two complete genomes sequenced for this strain with different MLST sequences; strain sequenced by Los Alamos National Laboratory, Los Alamos, New Mexico, USA; sequences conflicting with isolate A0389#2]Indonesia, West Java, Bekasi25/25H, K, CS, gmk, ilvd, pta, purh, pyca2, tpi
B.anthracis A0174Animal, cattle (bovine) (1974) [pXO1+/pXO2-]Canada25/25H, K, CS, gmk, ilvd, pta, purh, pyca2, tpi
B.anthracis Zimbabwe89 Zimbabwe25/25TH, H, K, P, dinb, gdpd, purf, yhfl
B.anthracis BrazilianVaccinalAnimal, cattle (bovine) (Bos taurus) Vaccine strain (2016)Brazil25/25TH, H, K, CS, gmk, purh, tpi
B.anthracis OhioACBAnimal, pig [pXO1+/pXO2+]USA, Ohio25/26TH, K, CS, P, ftsa, recf, succ
B.anthracis LarissaAnimal, sheep (Ovis) (2012)Greece25/26TH, H, K, P, clpc, gdpd, purf, yhfl
B.anthracis ANSES99-100Animal, cattle (bovine) (1999)France, Nievre25/26TH, H, K, CS, ilvd, purh, tpi
B.anthracis Ba-1802/12-GeoHuman, Patient ulcer (2012)Georgia25/26H, K, P, clpc, dinb, gdpd, purf, yhfl
B.anthracis 8903-GSoil (1997) [pXO1+/pXO2+]Georgia, Gardabani25/26TH, K, CS, P, ftsa, pyre, recf
B.anthracis 2000032879(1962) 25/26TH, H, K, CS, gmk, ilvd, tpi
B.anthracis 2000031052Animal, cattle (1956)USA, Wyoming25/26TH, K, CS, P, ftsa, recf, succ
B.anthracis SK-102Other, Wool from Pakistan (1976) [pXO1+/pXO2+]USA, New Jersey25/26TH, H, CS, P, gyrb, mbl, mdh, muts, pyca1
B.anthracis ANSES90  25/26TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.anthracis A0193Animal, cattle (cow) (1996) [pXO1+/pXO2+]USA, South Dakota24/24K, CS, ccpa, ftsa, glpt, gmk, ilvd, pta, purh, pyca2, pyre, recf, succ, tpi
B.anthracis A0488Animal, cattle (cow) (1935) [pXO1+/pXO2+]UK, England, Oxfordshire24/24K, CS, ccpa, ftsa, glpt, gmk, ilvd, pta, purh, pyca2, pyre, recf, succ, tpi
B.anthracis UR-1Human, blood (2012) [from a german heroin user; fatal case of injectional anthrax; pXO1+/pXO2+]Germany, Bavaria24/24TH, K, P, clpc, dinb, gdpd, pyre, recf, succ, yhfl
B.anthracis 2000032892  24/26H, K, clpc, dinb, gdpd, glpf, gmk, ilvd, pta, purf, purh, pyca2, yhfl
B.anthracis HanAnimal, dead cow blood (2013) [from the site of an anthrax outbreak]China, Liaoning Province23/23K, CS, adk, ccpa, glpt, gmk, ilvd, pta, purh, pyca2, pyre, recf, tpi
B.anthracis A0442Animal, Kudu (1975) [pXO1+/pXO2+]South Africa, Kruger National Park23/23K, CS, ccpa, ftsa, glpt, gmk, ilvd, pta, purh, pyca2, pyre, recf, tpi
B.anthracis Cvac02Animal, dead cow blood (2013) [from the site of an anthrax outbreak]China, Liaoning Province23/23TH, K, P, clpc, dinb, pyre, recf, succ, yhfl
B.anthracis 527[Federal Research Centre for Virus Diseases of Animals (BFAV); pXO1+/pXO2+]Germany, Jena14/14H, P
B.anthracis A15[University of Hohenheim; pXO1+/pXO2-]Germany, Hohenheim14/14H, P
B.anthracis 19/57[Federal Research Centre for Virus Diseases of Animals (BFAV); pXO1+/pXO2+]Germany, Jena14/14H, P
B.anthracis 5261[Federal Research Centre for Virus Diseases of Animals (BFAV); pXO1-/pXO2+]Germany, Jena14/14H, P
B.anthracis 4463[Federal Research Centre for Virus Diseases of Animals (BFAV); pXO1+/pXO2+]Germany, Jena14/14H, P
B.anthracis Mali[University of Goettingen; pXO1+/pXO2-]Germany, Goettingen14/14H, P
B.anthracis 13/38[Federal Research Centre for Virus Diseases of Animals (BFAV); pXO1+/pXO2+]Germany, Jena14/14H, P
B.anthracis 53/59[Federal Research Centre for Virus Diseases of Animals (BFAV); pXO1+/pXO2+]Germany, Jena14/14H, P
B.anthracis B11/38[Federal Research Centre for Virus Diseases of Animals (BFAV); pXO1+/pXO2+]Germany, Jena14/14H, P
B.anthracis UDIII-7[Federal Research Centre for Virus Diseases of Animals (BFAV); pXO1+/pXO2+]Germany, Jena14/14H, P
B.anthracis 2157[University of Goettingen; pXO1+/pXO2+]Germany, Goettingen14/14H, P
B.anthracis A58[University of Hohenheim; pXO1-/pXO2-]Germany, Hohenheim14/14H, P
B.anthracis B22/39[Federal Research Centre for Virus Diseases of Animals (BFAV); pXO1+/pXO2+]Germany, Jena14/14H, P
B.anthracis 19/37[Federal Research Centre for Virus Diseases of Animals (BFAV); pXO1+/pXO2+]Germany, Jena14/14H, P
B.anthracis Behring[Federal Research Centre for Virus Diseases of Animals (BFAV); pXO1-/pXO2+]Germany, Jena14/14H, P
B.anthracis BCAnimal, cattle (cow) [pXO1-/pXO2+]Korea (South), Bongcheon13/13K, P
B.anthracis CAU-1Human, blood (1994) [septicaemia anthrax; pXO1+/pXO2+; pXO1+/pXO2+]Korea (South), Kyungjoo City13/13K, P
B.anthracis Pasteur2[pXO1+/pXO2- or pXO1-/pXO2-] 13/13K, P
B.anthracis B19/39[Federal Research Centre for Virus Diseases of Animals (BFAV); pXO1+/pXO2+]Germany, Jena13/13P, adk, ccpa, ftsa, glpt, recf, succ
B.anthracis ATCC14186[pXO1+/pXO2-] 13/13K, P
B.anthracis 7700[pXO1-/pXO2-]Africa11/11TH, H
B.anthracis NVH93Animal, cattle (Bovine) (1993)Norway11/11TH, H
B.anthracis NVH87Animal, cattle (Bovine) (1987)Norway11/11TH, H
B.anthracis EPI674Human, muscle, Heroin abuserNorway11/11TH, H
B.anthracis A0462#1Animal, Guinea pig (1988) [Ames strain reisolated from guinea pig; pXO1+/pXO2+]UK7/7P
B.anthracis 2000032882[pXO1-/pXO2+] 7/7P
B.anthracis 2000031756[pXO1-/pXO2-] 7/7P
B.anthracis CN2Soil (2000) [pXO1+/pXO2+]Korea (South), Changnyeong7/7P
B.anthracis CAU-3Human, blood (1994) [septicaemia anthrax; pXO1+/pXO2+]Korea (South), Kyungjoo City7/7P
B.anthracis ET-51B(2000)Namibia, Etosha National Park7/7P
B.anthracis B04_025Animal, cattle (cow)France7/7TH
B.anthracis CAU-2Human, blood (1994) [septicaemia anthrax; pXO1+/pXO2+]Korea (South), Kyungjoo City7/7P
B.anthracis A0034Animal, cattle (bovine) (1990) [cattle anthrax; pXO1+/pXO2+]China, Changping7/7P
B.anthracis Ames_BA1004(2000)USA7/7P
B.anthracis ET-79B(2000)Namibia, Etosha National Park7/7P
B.anthracis B06_040SoilItaly7/7TH
B.anthracis CN1Human, blood (2000) [septicaemia anthrax; pXO1+/pXO2+]Korea (South), Changnyeong7/7P
B.anthracis A0102Animal, pig (1944) [pXO1+/pXO2+]Mozambique, Maputo7/7P
B.anthracis B06_038SoilItaly7/7TH
B.anthracis A73[University of Hohenheim; pXO1-/pXO2+]Germany, Hohenheim7/7H
B.anthracis A0062Animal, cattle (bovine) (1962) [pXO1+/pXO2+ or pXO1-/pXO2+]Poland7/7P
B.anthracis ET-76B(2000)Namibia, Etosha National Park7/7P
B.anthracis ANT1HumanJapan7/7P
B.anthracis 2002013066[pXO1-/pXO2-] 7/7P
B.anthracis A0462#2Animal, dead cow (1981) [cattle]USA7/7P
B.anthracis 2002721544[pXO1+/pXO2-] 7/7P
B.anthracis 2000031021SoilUSA7/7P
B.anthracis HSAnimal, cattle (Cow)Korea6/6K
B.anthracis GJ-2Animal, cattle (Cow)Korea6/6K
B.anthracis CNAnimal, cattle (Cow)Korea6/6K


19 isolate(s) sharing MLST alleles in supercluster 11

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.c_group MCCC1A00460Other, sediments (2005)Pacific Ocean7/7P
B.c_group MCCC1A06361Other, sediments (2010)Gulf of Mexico7/7P
B.c_group MCCC1A00394Other, sediments (2005)Pacific Ocean7/7P
B.c_group MCCC1A00239Other, sediments (2005)Pacific Ocean7/7P
B.c_group MCCC1A00447Other, sediments (2005)Pacific Ocean7/7P
B.c_group MCCC1A00262Other, sediments (2005)Pacific Ocean7/7P
B.c_group MCCC1A06360Other, sediments (2010)Gulf of Mexico7/7P
B.c_group MCCC1A00267Other, sediments (2005)Pacific Ocean7/7P
B.c_group MCCC1A00235Other, sediments (2005)Pacific Ocean7/7P
B.c_group MCCC1A00266Other, sediments (2005)Pacific Ocean7/7P
B.c_group MCCC1A00268Other, sediments (2005)Pacific Ocean7/7P
B.c_group MCCC1A00265Other, sediments (2005)Pacific Ocean7/7P
B.c_group MCCC1A00431Other, sediments (2005)Pacific Ocean7/7P
B.c_group MCCC1A00395Other, sediments (2005)Pacific Ocean7/7P
B.c_group MCCC1A06359Other, sediments (2010)Gulf of Mexico7/7P
B.c_group MCCC1A00274Other, sediments (2005)Pacific Ocean7/7P
B.cereus BGSC6A88Human, wound infection (2004) [sequences conflicting with isolate 179989.X]UK, Scotland7/7P
B.c_group MCCC1A00430Other, sediments (2005)Pacific Ocean7/7P
B.c_group MCCC1A00419Other, sediments (2005)Pacific Ocean7/7P


6 isolate(s) sharing MLST alleles in supercluster 12

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus AFS080002Soil (2014)USA, New York26/26TH, H, K, CS, P
B.cereus AFS028292Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS064200Soil (2014)USA, New York26/26TH, H, K, CS, P
B.cereus AFS065496Plant, Corn core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS039661Soil (2014)USA, New York24/26H, CS, glpf, gmk, gyrb, ilvd, mdh, muts, purh, pyca1, pyca2, rpob, tpi
B.cereus AFS075781Plant, Soybean core (2014)USA, Iowa24/26TH, CS, P, ftsa, gyrb, mdh, muts, pyca1, recf, rpob, succ


41 isolate(s) sharing MLST alleles in supercluster 13

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus 822BCERHumanUSA, Washington26/26TH, H, K, CS, P
B.cereus B4118Food (2013)Netherlands26/26TH, H, K, CS, P
B.cereus AFS030229Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus 823BTHUHumanUSA, Washington26/26TH, H, K, CS, P
B.cereus FSLW8-0268Other, Evaporator (last effect) - Liquid (WIP) (2012)USA, New York26/26TH, H, K, CS, P
B.cereus DSM626(1966)USA, Illinois26/26TH, H, K, CS, P
B.cereus SJ-S21HumanUSA, Tennessee, Memphis26/26TH, H, K, CS, P
B.cereus 820BCERHumanUSA, Washington26/26TH, H, K, CS, P
B.cereus MOD1Bc77Plant, Sesame Seed (2015)USA, Maryland26/26TH, H, K, CS, P
B.cereus N31Other, Sediments (2002)China, South China Sea26/26TH, H, K, CS, P
B.cereus SJ-S17HumanUSA, Tennessee, Memphis25/26TH, H, K, P, clpc, dinb, purf, yhfl
B.cereus FORC005Food, chicken cutlett (2014)Korea (South), Inchon25/26TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.thuringiensis GOE3#1Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)Germany, Goettingen25/26H, K, CS, gmk, ilvd, pta, purh, pyca2, tpi
B.cereus A50(2014)Australia24/25TH, H, CS, gmk, gyrb, mdh, muts, purh, pyca1, rpob, tpi
B.cereus #17Animal, Mouse microbiota 24/26TH, H, P, clpc, dinb, gdpd, gyrb, mbl, mdh, purf, pyca1, rpob
B.cereus AFS009840Plant, core (2014)USA, North Carolina24/26TH, H, P, clpc, dinb, gdpd, gyrb, mdh, muts, purf, pyca1, rpob
B.cereus INRAA3Food, starch (1998) (1998)France, Normandie24/26H, K, clpc, dinb, glpf, gmk, ilvd, panc, pta, purf, purh, tpi, yhfl
B.cereus 29Animal, crab (Callinectes sp.) gastrointestinal tract (2016)Brazil, Ceara, Pacoti River, Fortaleza24/26H, K, CS, glpf, gmk, ilvd, pta, tpi
B.cereus FORC048Plant, Sesame leaf (2014)Korea (South), Gwangju24/26TH, K, P, clpc, dinb, ftsa, gdpd, purf, pyre, recf
B.cereus AFS099306Plant, core (2014)USA, North Carolina23/26H, K, P, clpc, dinb, purf
B.cereus AFS049840Plant, Wheat plant (2014)USA, North Carolina23/26TH, H, P, dinb, gyrb, mdh, muts, purf, pyca1, rpob, yhfl
B.cereus AFS033081Animal, Insect, beetle (2013)USA, North Carolina23/26TH, H, clpc, dinb, gdpd, gmk, gyrb, ilvd, mdh, muts, purf, pyca1, rpob, tpi
B.cereus MIT0214Other, Deep subsurface (2010) [isolated through enrichment of samples from geologic sequestration sites in pressurized bioreactors containing a supercritical CO2 headspace]USA, Texas23/26H, K, clpc, dinb, gdpd, gmk, ilvd, panc, purf, purh, pyca2, tpi
B.cereus m1550Food, uncooked chicken (1987)Brazil23/26TH, H, K, P, dinb, yhfl
B.cereus AFS004498(2014)USA, North Carolina22/26TH, H, clpc, dinb, gdpd, gmk, gyrb, ilvd, mdh, purf, purh, pyca1, rpob
B.cereus 25#1Animal, crab (Ucides sp.) gastrointestinal tract (2016)Brazil, Ceara, Pacoti River, Fortaleza21/21K, adk, ccpa, clpc, dinb, gdpd, glpf, glpt, gmk, ilvd, panc, pta, pyre, recf, succ, tpi
B.cereus D12_2Food, Korean fermented food (2016)Korea (South)21/26K, adk, ccpa, clpc, dinb, ftsa, gdpd, glpt, gmk, pta, purf, pyca2, recf, succ, tpi, yhfl
B.cereus AFS092659Plant, Corn core (2014)USA, North Carolina20/26K, adk, ccpa, clpc, dinb, ftsa, glpt, gmk, purf, purh, pyca2, recf, succ, tpi, yhfl
B.cereus AFS082409Plant, core (2014)USA, North Carolina19/26H, clpc, dinb, gdpd, gmk, gyrb, mbl, mdh, pta, pyca1, pyca2, rpob, tpi
B.cereus B4264Human, blood and pleural fluid (1969) [human fatal pneumonia] 18/26K, adk, ccpa, dinb, ftsa, glpt, gmk, pta, purf, purh, pyca2, succ, tpi
B.cereus VD184  18/26H, gdpd, glpf, gyrb, ilvd, muts, pta, purf, pyca1, pyca2, rpob, yhfl
B.cereus BGSC6A1[Wild type isolate] 13/13CS, P
B.c_group ATCC11778[B.cereus or B.mycoides]USA, New York8/13P, mbl
B.c_group K14_4228(2014)Korea (South)7/7P
B.cereus K15-3521Human, faeces/stools (2015)Korea (South)7/7P
B.cereus BGSC6A2[Wild type isolate] 7/7P
B.cereus S6552Soil (2007)USA, Maryland, Rockville7/7P
B.thuringiensis S86  7/7P
B.thuringiensis BGSC4E6(1965) [sequences conflicting with isolate T04002]Canada7/7P
B.c_group MCCC1A01404Other, sediments (2006)South China Sea7/7P
B.c_group DVM_32SoilJapan7/7P


10 isolate(s) sharing MLST alleles in supercluster 14

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.thuringiensis IBL3794Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3791Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3682Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3683Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3681Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3793Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3792Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3795Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3565Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3680Soil (2009)USA, Maryland7/7P


3 isolate(s) sharing MLST alleles in supercluster 15

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.thuringiensis IMSNU12090[derived from strain KCTC1509 cured of the insecticidal crystal toxin] 6/6K
B.thuringiensis IMSNU11043  6/6K
B.thuringiensis IMSNU10051Animal, diseased insect larvae 6/6K


41 isolate(s) sharing MLST alleles in supercluster 16

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus MOD1Bc199Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc181Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc194Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc197Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc62Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc193Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc59Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc196Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc200Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc186Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc191Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus Q1Other, deep-subsurface oil reservoirChina (Northeastern), Daqing oil field26/26TH, H, K, CS, P
B.cereus MOD1Bc188Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc178Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc61Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc202Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc192Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc185Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc65Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc180Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc179Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc60Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc183Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc198Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc56Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc63Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc189Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc58Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc204Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc182Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc195Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.c_group AH826Human, periodontitis (1996)Norway, Rogaland11/11TH, H
B.c_group AH819Human, periodontitis (1995)Norway, Oslo11/11TH, H
B.c_group AH825Human, periodontitis (1996)Norway, Akershus11/11TH, H
B.c_group AH829Human, periodontitis (1996)Norway, Akershus11/11TH, H
B.c_group AH824Human, periodontitis (1996)Norway, Akershus11/11TH, H
B.c_group AH828Human, periodontitis (1996)Norway, Oslo11/11TH, H
B.c_group AH827Human, periodontitis (1996)Norway, Hedmark11/11TH, H
B.c_group AH823Human, periodontitis (1996)Norway, Oslo11/11TH, H
B.c_group AH831Human, periodontitis (1996)Norway, Oslo10/11H, glpf, panc, pta
B.c_group KW64[Children-s Hospital Oakland Research Institute (CHORI)]USA, California7/7P


10 isolate(s) sharing MLST alleles in supercluster 17

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.pseudomycoides AFS017092Soil (2014)USA, New York25/25K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.pseudomycoides AFS060037Soil (2014)USA, New York25/25K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.mycoides SB4Food (2016)Netherlands25/25K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.pseudomycoides AFS018975Soil (2014)USA, New York25/25K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.c_group VDM021SoilGreenland24/25K, CS, P, adk, ccpa, ftsa, pyre, succ
B.pseudomycoides FSLK6-0042Dairy products, raw milk (2012)USA, New York24/25K, P, adk, ccpa, clpc, dinb, ftsa, gdpd, purf, pyre, recf, succ, yhfl
B.c_group VD136SoilUK, Scotland23/23K, adk, ccpa, clpc, dinb, ftsa, gdpd, glpf, gmk, ilvd, panc, pta, pyca2, pyre, recf, succ, tpi, yhfl
B.c_group VDM006SoilSpain21/25K, adk, ccpa, clpc, dinb, ftsa, gdpd, glpf, gmk, ilvd, panc, pta, pyca2, pyre, succ, tpi
B.c_group FSLH8-0481Dairy products, milk products (2012)USA7/7P
B.c_group FSLK6-1142Other, environmental (2006)USA7/7P


45 isolate(s) sharing MLST alleles in supercluster 18

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.mycoides WSBC10969Dairy products, raw milk (2014)Germany26/26TH, H, K, CS, P
B.mycoides S3E15Soil (2016)Netherlands26/26TH, H, K, CS, P
B.mycoides GM5LPPlant, English ray-grass (Lolium perenne)Germany26/26TH, H, K, CS, P
B.mycoides GM6LPPlant, English ray-grass (Lolium perenne)Germany26/26TH, H, K, CS, P
B.weihenstephanensis BtB2-4Soil, forest soil mud [emetic toxin/cereulide producer]Belgium26/26TH, H, K, CS, P
B.mycoides MOD1Bc228Food, food product (2016)USA, Maryland26/26TH, H, K, CS, P
B.mycoides M2E15Food, Potato (2014)Netherlands26/26TH, H, K, CS, P
B.thuringiensis BGSC4BQ1SoilSpain26/26TH, H, K, CS, P
B.weihenstephanensis CER057Food, parsley [emetic toxin/cereulide producer]Belgium26/26TH, H, K, CS, P
B.c_group VDM019SoilGreenland26/26TH, H, K, CS, P
B.mycoides FSLE2-0214Food, finished RTE dairy food product (2014)USA25/26K, CS, P, adk, ftsa, glpt, pyre, recf, succ
B.weihenstephanensis CER074Dairy products, raw milk [emetic toxin/cereulide producer]Belgium25/26TH, K, CS, P, ftsa, pyre, recf
B.mycoides EC18Soil (2016)Netherlands25/26TH, K, CS, P, ftsa, pyre, succ
B.mycoides SB8Soil (2016)Netherlands25/26TH, H, CS, P, gyrb, mbl, mdh, muts, pyca1
B.mycoides S2E19Soil (2016)Netherlands24/26H, K, P, clpc, dinb, gdpd, purf
B.c_group VDM022SoilGreenland24/26CS, P, adk, ftsa, glpt, gyrb, mdh, muts, pyca1, pyre, recf, rpob, succ
B.mycoides FSLH7-0683Dairy products, pasteurized 2% milk (2005)USA24/26TH, H, K, P, clpc, dinb, purf
B.mycoides MOD1Bc221Food, food product (2016)USA, Maryland23/26TH, H, P, clpc, dinb, gyrb, mbl, mdh, muts, purf, pyca1
B.mycoides FSLM7-0109Dairy products, raw milk (2011)USA23/26TH, K, P, clpc, dinb, ftsa, gdpd, pyre, succ
B.c_group VD078SoilGreenland21/26TH, H, clpc, gdpd, gmk, mbl, mdh, muts, purh, pyca1, rpob, tpi
B.mycoides B4117Food (2013)Netherlands21/26TH, H, dinb, gdpd, gmk, gyrb, ilvd, mdh, muts, pyca1, rpob, tpi
B.mycoides ATCC6462SoilKorea (South), Seoul20/26K, adk, ccpa, clpc, gdpd, glpf, gmk, ilvd, panc, purh, pyca2, pyre, recf, succ, yhfl
B.mycoides FSLM7-0669Dairy products, raw milk (2011)USA20/26K, P, adk, dinb, glpt, panc, purf, pyre, succ
B.cereus 37R3Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. hereward grown in a plot in which the previous crop was wheat (Triticum aestivum) var. hereward]UK, England, Rothamsted7/7P
B.c_group KW19[Children-s Hospital Oakland Research Institute (CHORI)]USA, California7/7P
B.cereus 37R1Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. hereward grown in a plot in which the previous crop was wheat (Triticum aestivum) var. hereward]UK, England, Rothamsted7/7P
B.thuringiensis PLBPN37/1Soil (2012)Poland7/7P
B.thuringiensis PLmJAS15Soil (2012)Poland7/7P
B.thuringiensis PLmJAS20Soil (2012)Poland7/7P
B.cereus 37R5Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. cadenza grown in a plot in which the previous crop was wheat (Triticum aestivum) var. hereward]UK, England, Rothamsted7/7P
B.c_group D28-3.B.iSoil (2006)UK7/7P
B.thuringiensis PLmBPN20Soil (2012)Poland7/7P
B.cereus 22R5Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. x:19 grown in a plot in which the previous crop was wheat (Triticum aestivum) var. hereward]UK, England, Rothamsted7/7P
B.c_group D28-13.b.iSoil (2006)UK7/7P
B.cereus 58R3Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. hereward grown in a plot in which the previous crop was wheat (Triticum aestivum) var. cadenza]UK, England, Rothamsted7/7P
B.cereus 32R6Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. hereward grown in a plot in which the previous crop was wheat (Triticum aestivum) var. hereward]UK, England, Rothamsted7/7P
B.c_group D10-8.A.iSoil (2006)UK7/7P
B.mycoides B0518  7/7P
B.cereus 32R3Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. cadenza grown in a plot in which the previous crop was wheat (Triticum aestivum) var. hereward]UK, England, Rothamsted7/7P
B.weihenstephanensis Bw204Food (2005)UK, Wales, Cardiff7/7P
B.c_group 9304Food (2004)UK, England, Bristol7/7P
B.cereus 37R6Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. hereward grown in a plot in which the previous crop was wheat (Triticum aestivum) var. hereward]UK, England, Rothamsted7/7P
B.c_group B951  7/7P
B.c_group PL15Soil 7/7P
B.c_group E5i6Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P


11 isolate(s) sharing MLST alleles in supercluster 19

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus AFS012491Plant, Core Other Plant (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis JM-Mgvxx-63Other, oil-contaminated mangrove sediment (2013)Brazil, Sao Paulo, Bertioga25/26TH, H, K, P, clpc, dinb, gdpd, yhfl
B.cereus AFS085114Plant, Core Other Plant (2014)USA, North Carolina23/26H, K, clpc, dinb, gdpd, glpf, gmk, ilvd, panc, purf, pyca2, tpi
B.thuringiensis BA04Soil (2013)India, Assam22/26TH, H, CS, gyrb, ilvd, muts, pyca1, rpob, tpi
B.thuringiensis HS18-1Soil (2009)China, Sichuan Province18/26H, clpc, gdpd, glpf, gmk, mdh, muts, purf, pyca1, pyca2, rpob, tpi
B.cereus RIVMBC964Food, kebab (2002)Netherlands17/26H, clpc, glpf, gyrb, mdh, muts, panc, purh, pyca1, pyca2, rpob
B.thuringiensis AFS065400Soil (2014)USA, New York16/26H, clpc, gdpd, glpf, gyrb, ilvd, muts, pyca2, rpob, tpi
B.cereus S6646Soil (2007)USA, Maryland, Rockville7/7P
B.thuringiensis KBAD4Soil, Forest soil (2000)France, Versailles6/6CS
B.thuringiensis KBAD6Soil, Forest soil (2000)France, Versailles6/6CS
B.thuringiensis KBAD1Soil, Forest soil (2000)France, Versailles6/6CS


132 isolate(s) sharing MLST alleles in supercluster 20

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.thuringiensis Lr7/2Other, Water (2011)Chile, Lirima thermal springs26/26TH, H, K, CS, P
B.thuringiensis AFS066483Plant, Corn leaf (2014)USA, Illinois26/26TH, H, K, CS, P
B.thuringiensis BGSC4M3#2Animal, Insect, silkworm (Bombyx mori) (2013) [two complete genomes sequenced for this strain with different MLST sequences and origins; strain sequenced by Biology and Biochemistry, University of Bath, England, UK; sequences conflicting with isolate BGSC4M3#1]UK26/26TH, H, K, CS, P
B.thuringiensis WBt-2Soil (2003)China, Hebei, Baoding26/26TH, H, K, CS, P
B.c_group SchrouffFood 26/26TH, H, K, CS, P
B.c_group VD022Other, Water from a small pond siteBelgium26/26TH, H, K, CS, P
B.thuringiensis AFS053253Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis HD542Animal, insectUSA26/26TH, H, K, CS, P
B.thuringiensis AFS094730Plant, Soybean leaf (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis BGSC4C3Animal, Insect, silkworm (Bombyx mori)France26/26TH, H, K, CS, P
B.thuringiensis AFS018331Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS076262Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis AFS023096Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis BGSC4BR1Animal, Insect, Black Arches/Nun Moth (Lymantria monacha) larvaeDenmark26/26TH, H, K, CS, P
B.thuringiensis AFS036437Food, Mushroom (2013)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis BGSC4R1[Wild type isolate] 26/26TH, H, K, CS, P
B.thuringiensis AFS054059Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.thuringiensis AFS046081Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis AFS015413Plant, Corn grainbin dust (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS086178(2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis BGSC4K1Animal, Insect, silkworm (Bombyx mori) (2013)UK26/26TH, H, K, CS, P
B.thuringiensis AFS029508Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis AFS002494Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS095482Other, excrement (2014)USA, Iowa26/26TH, H, K, CS, P
B.c_group K-5975cFood 26/26TH, H, K, CS, P
B.thuringiensis AFS030095Plant, Soybean root (2014)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis AFS053994Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS075396Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis AFS066671Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis BGSC4C1Animal, Insect, silkworm (Bombyx mori) (1987) [two complete genomes sequenced for this strain with identical MLST sequences]Czechoslovakia26/26TH, H, K, CS, P
B.thuringiensis AFS064999Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis AFS043402Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.thuringiensis AFS090355Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.thuringiensis HD12Soil (2012)USA26/26TH, H, K, CS, P
B.thuringiensis AFS059859(2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS016611Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis AFS065825Plant, Soybean root (2014)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis AFS055421Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.thuringiensis AFS032723Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.c_group MSX-A1  26/26TH, H, K, CS, P
B.thuringiensis AFS022028Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis AFS043499Plant, Soybean root (2013)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis AFS093126Soil (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis BGSC4AK1(1994)Korea (South)26/26TH, H, K, CS, P
B.thuringiensis AFS070359Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.thuringiensis AFS019758Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS053027Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis AFS055470Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.c_group TIAC219Food 26/26TH, H, K, CS, P
B.thuringiensis AFS054136Plant, Corn grainbin dust (2013)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS054440Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis YBT-032SoilChina26/26TH, H, K, CS, P
B.thuringiensis AFS022064Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis BGSC4AA1Soil (1987) [originally classified as B.thuringiensis tenebrionis; two complete genomes sequenced for this strain with identical MLST sequences]UK26/26TH, H, K, CS, P
B.cereus G9842Human, faeces/stools (1996) [from the same food poisoning outbreak as isolates G9843 and G9844; human diarrhea]USA, Nebraska26/26TH, H, K, CS, P
B.thuringiensis AFS095989Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis L-7601(2015)China, Tianjin26/26TH, H, K, CS, P
B.thuringiensis AFS004356Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS050333Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS056670Plant, Corn grainbin dust (2013)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS061760Plant, Corn (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS046545Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.thuringiensis AFS066485Food, Mushroom (2013)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS000517Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis HD771  26/26TH, H, K, CS, P
B.thuringiensis AFS040661Plant, Corn leaf (2014)USA, Illinois26/26TH, H, K, CS, P
B.thuringiensis HD600Animal, Insect, silkworm (2007)Japan26/26TH, H, K, CS, P
B.thuringiensis AFS040987Plant, Soybean root (2014)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis AFS042804Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis AFS031210Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis T04001 Canada25/25H, K, CS, gmk, ilvd, pta, purh, pyca2, tpi
B.thuringiensis BGSC4E3[Wild type isolate]UK25/26K, CS, P, ccpa, ftsa, glpt, pyre, recf, succ
B.thuringiensis AFS050550Plant, Soybean leaf (2014)USA, Minnesota25/26TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.thuringiensis AFS075683Animal, earthworm (2013)USA, Minnesota25/26TH, H, CS, P, gyrb, mbl, mdh, muts, rpob
B.thuringiensis AFS007900Plant, Soybean core (2014)USA, Iowa25/26TH, K, CS, P, ftsa, pyre, recf
B.thuringiensis DAR81934#2[exhibits molluscicidal activity toward the pest snail Cernuella virgata; two complete genomes sequenced for this strain with different MLST sequences; strain sequenced by Joint Genome Institute, Walnut Creek, California, USA; sequences conflicting with isolate DAR81934#1]Australia, Port Campbell National Park25/26TH, H, CS, P, gyrb, mbl, mdh, muts, rpob
B.thuringiensis AFS017371(2014)USA, Iowa25/26TH, H, K, P, dinb, gdpd, purf, yhfl
B.cereus MOD1Bc143Food, Hybrid Tilapia (2006)USA, Maryland24/26TH, H, P, clpc, dinb, gdpd, gyrb, mbl, muts, pyca1, rpob, yhfl
B.thuringiensis DAR81934#1[exhibits molluscicidal activity toward the pest snail Cernuella virgata; two complete genomes sequenced for this strain with different MLST sequences; strain sequenced by School of Agricultural and Wine Sciences, Charles Sturt University, Wagga Wagga, New South Wales, Australia; sequences conflicting with isolate DAR81934#2]Australia, Port Campbell National Park24/26TH, CS, P, ftsa, gyrb, mbl, mdh, muts, recf, rpob, succ
B.thuringiensis BGSC4BS1SoilSpain24/26TH, H, CS, P, gyrb, mbl, muts, rpob
B.thuringiensis BGSC4BZ1Soil, black soilChina23/26TH, H, P, clpc, dinb, gdpd, gyrb, mdh, muts, rpob, yhfl
B.c_group HuB4-4SoilBelgium23/26TH, CS, P, ftsa, gyrb, mbl, mdh, muts, pyre, rpob
B.thuringiensis AFS089089Plant, Corn grainbin dust (2013)USA, Iowa21/26P, adk, ccpa, clpc, dinb, ftsa, gdpd, glpt, gyrb, mdh, muts, pyca1, recf, rpob, yhfl
B.thuringiensis AFS049207Other, excrement (2014)USA, Iowa20/26TH, P, clpc, gdpd, gyrb, muts, purf, pyca1, rpob, succ, yhfl
B.thuringiensis IBL122Soil (1983) [bears Photorhabdus/Yersinia-like toxin genes]USA, Wyoming7/7P
B.thuringiensis T04024(1981)Pakistan7/7P
B.thuringiensis IBL275Soil (1983) [bears Photorhabdus/Yersinia-like toxin genes]USA, Wyoming7/7P
B.thuringiensis IBL273Soil (1983) [bears Photorhabdus/Yersinia-like toxin genes]USA, Wyoming7/7P
B.thuringiensis 4btt USA7/7P
B.thuringiensis T10018Animal, Insect, silkworm (Bombyx mori) (1982)Japan7/7P
B.thuringiensis IBL3579Soil (1983) [bears Photorhabdus/Yersinia-like toxin genes]USA, New York7/7P
B.thuringiensis T08009#1(1979) [sequences conflicting with isolate T08009#2]USA7/7P
B.thuringiensis T04016Animal, Insect, silkworm (Bombyx mori) (1980)Pakistan7/7P
B.cereus G9843Human, faeces/stools (1996) [from the same food poisoning outbreak as isolates G9842 and G9844]USA, Nebraska7/7P
B.thuringiensis T08023(1987)Brazil7/7P
B.thuringiensis IBL10011[bears Photorhabdus/Yersinia-like toxin genes] 7/7P
B.thuringiensis T08001(1963)USA7/7P
B.thuringiensis IBL10010[bears Photorhabdus/Yersinia-like toxin genes] 7/7P
B.cereus G9844Human, faeces/stools (1996) [from the same food poisoning outbreak as isolates G9842 and G9843]USA, Nebraska7/7P
B.cereus B06_032HumanFrance7/7TH
B.thuringiensis IBL500Soil (1986) [bears Photorhabdus/Yersinia-like toxin genes]Norway7/7P
B.thuringiensis BGSC4M2 UK, England7/7P
B.thuringiensis IBL1410Other, Novodor bio-insecticide from Mycogen (1994)USA, California, San Diego7/7P
B.thuringiensis IBL3090Soil (1983) [bears Photorhabdus/Yersinia-like toxin genes]USA, New York7/7P
B.c_group KW63[Children-s Hospital Oakland Research Institute (CHORI)]USA, California7/7P
B.thuringiensis IBL3476SoilUSA, Maryland7/7P
B.cereus 3L4Dairy products, milk products (2016)China, Shaanxi Province7/7P
B.thuringiensis T04002(1965) [sequences conflicting with isolate BGSC4E6]Canada7/7P
B.c_group 295618Other, heroinUK7/7TH
B.thuringiensis BGSC4K5  7/7P
B.thuringiensis LFB1588Dairy products, pasteurized whole milk (2011)Brazil7/7TH
B.thuringiensis 127-S-3Plant, leaves of clover (Trifolium hybridum) (2004)UK7/7P
B.c_group KW55[Children-s Hospital Oakland Research Institute (CHORI)]USA, California7/7P
B.thuringiensis 2810-S-16Plant, leaves of clover (Trifolium hybridum) (2004)UK7/7P
B.thuringiensis T10017Soil (1982)USA7/7P
B.c_group FSLK6-0268Dairy products, milk products (2012)USA7/7P
B.thuringiensis 286-S-6Plant, leaves of clover (Trifolium hybridum) (2004)UK7/7P
B.cereus B06_005Human, woundFrance7/7TH
B.cereus HF31Food (2015)Germany, Berlin7/7P
B.thuringiensis T15001Soil (1983)USA, North Dakota7/7P
B.c_group BGSC4Q4[Wild type isolate] 7/7P
B.c_group FSLW7-1101Dairy products, milk products (2010)USA7/7P
B.thuringiensis T10001(1967)Germany7/7P
B.thuringiensis IBL747Soil (1983) [bears Photorhabdus/Yersinia-like toxin genes]USA, New York7/7P
B.c_group 295171Human, bloodUK7/7TH
B.cereus BC_14Food, egg product (2006)Italy (Southern)7/7P
B.thuringiensis 169-S-16Plant, leaves of clover (Trifolium hybridum) (2004)UK7/7P
B.c_group FSLW7-1334Human, faeces/stools (2011)USA7/7P
B.c_group KW27[Children-s Hospital Oakland Research Institute (CHORI)]USA, California7/7P
B.thuringiensis T08012Animal, Insect, silkworm (Bombyx mori) (1980)Pakistan7/7P
B.thuringiensis 158-S-3Plant, leaves of clover (Trifolium hybridum) (2004)UK7/7P
B.thuringiensis T08031Other, lake sediments (1991)Brazil7/7P


21 isolate(s) sharing MLST alleles in supercluster 21

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.wiedmannii AFS064159Plant, Weed leaf (2014)USA, Ohio26/26TH, H, K, CS, P
B.wiedmannii AFS054563Plant, Corn leaf (2014)USA, Illinois26/26TH, H, K, CS, P
B.c_group WSBC10311[B.cereus or B.weihenstephanensis]Germany, Weihenstephan26/26TH, H, K, CS, P
B.wiedmannii AFS057498Plant, Weed plant (2014)USA, Indiana26/26TH, H, K, CS, P
B.wiedmannii AFS028955Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.wiedmannii AFS026476(2014)USA, Iowa26/26TH, H, K, CS, P
B.wiedmannii AFS071466Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.c_group BAG6X1-1SoilUSA, Massachusetts, Boston26/26TH, H, K, CS, P
B.wiedmannii AFS090430Plant, Corn grainbin dust (2013)USA, Iowa26/26TH, H, K, CS, P
B.wiedmannii AFS078926Plant, Soybean core (2014)USA, Iowa25/26TH, K, CS, P, ftsa, recf, succ
B.wiedmannii AFS063338Soil (2014)USA, Iowa25/26TH, K, CS, P, pyre, recf, succ
B.wiedmannii AFS064408Other, excrement (2014)USA, Iowa25/26TH, H, CS, P, gyrb, mbl, mdh, pyca1, rpob
B.cereus FSLM8-0091Dairy products, raw milk (2012)USA25/26TH, H, K, P, clpc, dinb, purf, yhfl
B.wiedmannii AFS072284Plant, Soybean leaf (2014)USA, Illinois24/25TH, K, CS, ftsa, gmk, purh, pyre, recf, tpi
B.wiedmannii AFS056359Plant, Weed plant (2014)USA, Indiana24/26TH, H, P, dinb, gdpd, gyrb, mbl, mdh, muts, purf, pyca1, yhfl
B.wiedmannii AFS002707Plant, Soybean leaf (2014)USA, Illinois24/26K, CS, P, adk, ftsa, glpt, recf, succ
B.thuringiensis GOE6#1Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)Germany, Goettingen24/26CS, P, ccpa, ftsa, glpt, gyrb, mdh, muts, pyca1, pyre, recf, rpob, succ
B.c_group BAG2X1-2SoilUSA, Massachusetts, Boston23/26K, CS, adk, ccpa, ftsa, glpf, glpt, gmk, ilvd, pta, purh, recf, tpi
B.c_group PL24Soil 7/7P
B.c_group PL16Soil 7/7P
B.thuringiensis PLBB18/1Soil (2012)Poland7/7P


25 isolate(s) sharing MLST alleles in supercluster 22

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.thuringiensis IBL3708Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3712Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3761Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3759Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3713Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3690Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3688Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3731Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3692Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3700Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3726Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3715Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3801Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3691Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3724Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3716Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3686Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3684Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3802Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3694Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3717Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3709Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3728Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3714Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3687Soil (2009)USA, Maryland7/7P


26 isolate(s) sharing MLST alleles in supercluster 23

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.wiedmannii AFS056211Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.wiedmannii AFS052086Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.wiedmannii AFS075437Other, excrement (2014)USA, Iowa26/26TH, H, K, CS, P
B.wiedmannii AFS024711Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.wiedmannii AFS025735Soil (2014)USA, New York26/26TH, H, K, CS, P
B.wiedmannii AFS036771Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.wiedmannii AFS021943Plant, Soybean leaf (2014)USA, Iowa26/26TH, H, K, CS, P
B.wiedmannii AFS027918Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.wiedmannii AFS002508Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.wiedmannii AFS067814Soil (2014)USA, New York26/26TH, H, K, CS, P
B.wiedmannii AFS030115Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.wiedmannii AFS008930Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.wiedmannii AFS061181Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.wiedmannii AFS086460Soil (2014)USA, New York26/26TH, H, K, CS, P
B.wiedmannii AFS089520Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.wiedmannii AFS024024Plant, Corn core (2014)USA, Illinois25/26TH, H, K, CS, gmk, ilvd, purh
B.wiedmannii AFS078153Animal, earthworm (2013)USA, Minnesota25/26H, K, P, clpc, dinb, gdpd, purf, yhfl
B.wiedmannii AFS005864Plant, Corn (2014)USA, Minnesota25/26TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.wiedmannii AFS042581Animal, earthworm (2013)USA, Minnesota25/26H, K, CS, glpf, gmk, ilvd, pta, purh, tpi
B.wiedmannii AFS015207Plant, Soybean core (2014)USA, Iowa25/26TH, H, K, P, clpc, dinb, purf, yhfl
B.wiedmannii AFS032503Soil (2014)USA, New York25/26TH, K, CS, P, ftsa, pyre, recf
B.wiedmannii AFS070572Plant, Soybean root (2014)USA, Iowa25/26TH, H, K, CS, gmk, ilvd, purh
B.wiedmannii AFS038776Animal, earthworm (2013)USA, Minnesota24/26H, K, clpc, dinb, gdpd, glpf, gmk, ilvd, pta, purf, purh, pyca2, yhfl
B.wiedmannii AFS089424Plant, Soybean core (2014)USA, Iowa23/26TH, H, K, clpc, dinb, ilvd, purf, purh, yhfl
B.wiedmannii AFS053236Plant, Corn root (2014)USA, Iowa23/26K, adk, clpc, dinb, ftsa, gdpd, glpf, glpt, gmk, ilvd, purf, purh, pyca2, pyre, recf, succ, tpi, yhfl
B.c_group AR14-5Soil (2012)Argentina7/7P


64 isolate(s) sharing MLST alleles in supercluster 24

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.thuringiensis T01001Animal, Insect, Mediterranean flour moth/mill moth (Ephestia kuhniella/Anagasta kuehniella) (1958)Canada26/26TH, H, K, CS, P
B.thuringiensis AFS097514Plant, Soybean leaf (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS073530Plant, Soybean leaf (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS030961Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis BGSC4A3Animal, Insect, silkworm (Bombyx mori) (2013)UK26/26TH, H, K, CS, P
B.thuringiensis AFS098336Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS057829Plant, Wheat plant (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis ATCC10792#3Animal, Insect, Mediterranean flour moth/mill moth (Ephestia kuhniella/Anagasta kuehniella) [three complete genomes sequenced for this strain with different sequences and origins; strain sequenced by Biological Defense Research Directorate (BDRD), Rockville, Maryland, USA; sequences conflicting with isolates ATCC10792#1 and ATCC10792#2]Israel26/26TH, H, K, CS, P
B.thuringiensis NA205-3Other, dust from maize siloSpain26/26TH, H, K, CS, P
B.thuringiensis BGSC4A4Animal, Insect, tobacco moth/cacao moth/warehouse moth (Ephestia elutella)UK, England26/26TH, H, K, CS, P
B.thuringiensis IS5056Soil (2005)Poland, Biebrza National Park26/26TH, H, K, CS, P
B.thuringiensis AFS040438Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.thuringiensis CT-43 China26/26TH, H, K, CS, P
B.thuringiensis T01328Soil (1994)Brazil, Sao Paulo, Cubatao county26/26TH, H, K, CS, P
B.thuringiensis BGSC4BP1Soil, sesame fieldKorea (South)26/26TH, H, K, CS, P
B.thuringiensis BGSC4BN1Food, beansChina26/26TH, H, K, CS, P
B.thuringiensis AFS052794Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.thuringiensis AFS047495Plant, Corn (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS082247Plant, Corn leaf (2014)USA, Illinois26/26TH, H, K, CS, P
B.thuringiensis AFS039774Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS010823Plant, Soybean leaf (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS081620Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS077661Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS094706(2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis Bt407[Pasteur Institute; well studied isolate that has been cured of the plasmid that encodes the insecticidal crystal toxin; three complete genomes sequenced for this strain with identical MLST sequences]France, Paris26/26TH, H, K, CS, P
B.thuringiensis AFS052676Plant, Soybean leaf (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS099505Plant, Soybean core (2014)USA, Iowa25/26H, K, P, clpc, dinb, gdpd, purf, yhfl
B.thuringiensis AFS038158Plant, Soybean root (2013)USA, Minnesota25/26TH, H, CS, P, gyrb, mbl, mdh, muts, rpob
B.thuringiensis AFS057784Plant, Corn core (2014)USA, Illinois25/26TH, H, K, CS, gmk, ilvd, purh
B.thuringiensis ATCC10792#2Animal tissue (1946) [three complete genomes sequenced for this strain with different sequences and origins; strain sequenced by School of Applied Biosciences, Kyungpook National University, Daegu, South Korea; sequences conflicting with isolates ATCC10792#1 and ATCC10792#3]USA24/24TH, K, P, clpc, dinb, ftsa, gdpd, purf, recf, succ
B.thuringiensis AFS060060Plant, Soybean core (2014)USA, Iowa24/26TH, H, CS, gmk, gyrb, mdh, muts, purh, pyca1, rpob, tpi
B.thuringiensis AFS099341Plant, Corn leaf (2014)USA, Illinois24/26H, K, CS, glpf, gmk, purh, pyca2, tpi
B.thuringiensis AFS007186Plant, Corn leaf (2014)USA, Illinois24/26H, K, CS, glpf, gmk, ilvd, purh, pyca2
B.thuringiensis ATCC10792#1[three complete genomes sequenced for this strain with different sequences and origins; strain sequenced by Department of Food Science and Biotechnology College of Biotechnology and Bioscience, Kangwon National University, Chunchon, South Korea; sequences conflicting with isolates ATCC10792#2 and ATCC10792#3] 23/23P, ccpa, dinb, ftsa, gdpd, glpt, gyrb, mbl, mdh, muts, panc, purf, pyca1, pyre, recf, succ, yhfl
B.thuringiensis AFS098506Plant, Corn root (2014)USA, Iowa23/26K, CS, adk, ftsa, glpf, glpt, gmk, ilvd, pta, pyca2, recf, succ, tpi
B.thuringiensis AFS011848Plant, Soybean core (2014)USA, Iowa22/26TH, H, clpc, gdpd, gmk, gyrb, ilvd, mbl, mdh, muts, rpob, tpi, yhfl
B.thuringiensis AFS058254Plant, Soybean leaf (2014)USA, Minnesota22/26K, P, clpc, ftsa, glpt, panc, purf, pyre, recf, succ, yhfl
B.thuringiensis AFS001991Plant, Corn leaf (2014)USA, Illinois21/26TH, H, CS, gyrb, mbl, mdh, purh, rpob
B.thuringiensis T01058(1964)Switzerland7/7P
B.thuringiensis BGSC4A2[Wild type isolate] 7/7P
B.thuringiensis BGSC4A1#2(1915) [Wild type isolate; sequences conflicting with isolate BGSC4A1#1] 7/7P
B.thuringiensis T01015(1962)Bulgaria7/7P
B.thuringiensis BGSC4D3[Wild type isolate] 7/7P
B.thuringiensis BGSC4A8  7/7P
B.c_group DVM_30SoilJapan7/7P
B.thuringiensis BGSC4A1#1(1915) [Wild type isolate; sequences conflicting with isolate BGSC4A1#2] 7/7P
B.thuringiensis IBL425Soil (1983)USA, New York7/7P
B.thuringiensis T01022Animal, earthworm/redworm (Eisenia foetida) (1964)USA7/7P
B.thuringiensis BGSC4A7[acrystalliferous] 7/7P
B.thuringiensis BGSC4A6[Wild type isolate] 7/7P
B.thuringiensis T01326Soil (1994)Chile7/7P
B.c_group KW33[Children-s Hospital Oakland Research Institute (CHORI)]USA, California7/7P
B.thuringiensis BGSC4A5 Czechoslovakia7/7P
B.thuringiensis KBBF3Soil, Forest soil (2000)France, Versailles6/6CS
B.thuringiensis KBBB7Soil, Forest soil (2000)France, Versailles6/6CS
B.thuringiensis KBBB5Soil, Forest soil (2000)France, Versailles6/6CS
B.thuringiensis KBBB8Soil, Forest soil (2000)France, Versailles6/6CS
B.thuringiensis KBBF4Soil, Forest soil (2000)France, Versailles6/6CS
B.thuringiensis KBBB6Soil, Forest soil (2000)France, Versailles6/6CS
B.thuringiensis KBBF2Soil, Forest soil (2000)France, Versailles6/6CS
B.thuringiensis KBBF6Soil, Forest soil (2000)France, Versailles6/6CS
B.thuringiensis KBBE5Soil, Forest soil (2000)France, Versailles6/6CS
B.thuringiensis KBBB4Soil, Forest soil (2000)France, Versailles6/6CS
B.thuringiensis KBBF1Soil, Forest soil (2000)France, Versailles6/6CS


6 isolate(s) sharing MLST alleles in supercluster 25

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus MB.22Food (2014)Germany, Munich26/26TH, H, K, CS, P
B.cereus MOD1Bc97Other, Oxytetracycline Medicated Fish Feed (2006)USA, Maryland25/26TH, H, K, P, clpc, dinb, purf, yhfl
B.cereus AFS061996(2014)USA, North Carolina21/26TH, K, P, clpc, dinb, gdpd, purf
B.cereus NVH0246/02Food, shrimps (2002) [originally proposed as B.anthracis]Thailand7/7H
B.c_group TE7-9Soil (2011)Kenya7/7P
B.cereus F5191Human, lung tissue (1983) [from the same patient biopsy as isolate F5190]USA, California7/7P


39 isolate(s) sharing MLST alleles in supercluster 26

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.thuringiensis IBL3755Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3746Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3745Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3756Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3772Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3758Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3739Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3765Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3762Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3769Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3741Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3718Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3733Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3773Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3735Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3736Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3744Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3768Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3786Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3787Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3775Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3753Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3748Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3774Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3743Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3732Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3784Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3749Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3754Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3734Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3737Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3740Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3764Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3767Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3770Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3752Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3771Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3730Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3750Soil (2009)USA, Maryland7/7P


19 isolate(s) sharing MLST alleles in supercluster 27

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus MOD1Bc187Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc177Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc213Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc55Plant, Sesame Seed (2015)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc212Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc210Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus SJ-S2HumanUSA, Tennessee, Memphis26/26TH, H, K, CS, P
B.cereus MOD1Bc201Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus AFS099758Plant, Corn (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus MOD1Bc190Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc136Food, Dietary Supplements (2015)USA, Maryland26/26TH, H, K, CS, P
B.cereus SJ-S24HumanUSA, Tennessee, Memphis26/26TH, H, K, CS, P
B.cereus MOD1Bc184Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc64Other, Baby Wipes (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus 16-00191  25/26TH, H, K, P, clpc, dinb, gdpd, purf
B.cereus FRI35  25/26TH, K, CS, P, ftsa, pyre, succ
B.cereus 143298.BHuman, wound infection (2004)UK, Scotland7/7P
B.cereus FJ15BC328Dairy products, milk products (2015)China, Fujian Province7/7P
B.cereus H1548Human, blood (2000) [human septicaemia, fatal]USA, North Carolina7/7P


2 isolate(s) sharing MLST alleles in supercluster 28

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.wiedmannii AFS001911Plant, core (2014)USA, North Carolina24/26H, K, CS, gmk, ilvd, pta, pyca2, tpi
B.wiedmannii AFS057349Plant, core (2014)USA, North Carolina24/26H, K, CS, gmk, ilvd, pta, pyca2, tpi


3 isolate(s) sharing MLST alleles in supercluster 29

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.c_group A3i1Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group A3i3Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group PL17Soil 7/7P


2 isolate(s) sharing MLST alleles in supercluster 30

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus F3920Human, lung (1982) [human pneumonia]USA, South Dakota7/7P
B.cereus G1440Human, lung (1988) [human pneumonia]USA, Louisiana7/7P


2 isolate(s) sharing MLST alleles in supercluster 31

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.thuringiensis Bt194 Brazil7/7P
B.thuringiensis LFB862Food, black pepper (1994)Brazil7/7P


3 isolate(s) sharing MLST alleles in supercluster 32

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.c_group A4i4Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group A4s3Soil (2002)UK, England, Berkshire7/7P
B.c_group A3o5Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P


10 isolate(s) sharing MLST alleles in supercluster 33

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.thuringiensis IBL3705Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3704Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3697Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3706Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3698Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3707Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3695Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3699Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3696Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3702Soil (2009)USA, Maryland7/7P


4 isolate(s) sharing MLST alleles in supercluster 34

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.thuringiensis BGSC4CC1Soil, grain fieldPakistan26/26TH, H, K, CS, P
B.thuringiensis BGSC4CE1SoilAzores26/26TH, H, K, CS, P
B.thuringiensis CEB02/079[Pasteur Institute]France, Paris7/7H
B.cereus BGSC6A7#2Other, purified from commercial probiotic BIOSUBTYL DALAT, manufactured in Vietnam [sequences conflicting with isolate BGSC6A7#1] 7/7P


66 isolate(s) sharing MLST alleles in supercluster 35

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.thuringiensis AFS099677Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS094922Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS076772Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS076861Plant, tree leaf (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS097917Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis BGSC4AO1(1989)Japan26/26TH, H, K, CS, P
B.thuringiensis AFS034818Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS036383Plant, Soybean leaf (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS034600Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS088016Soil (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS081470Plant, Weed plant (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS056280Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS005140Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS030866Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS065666Soil (2014)USA, New York26/26TH, H, K, CS, P
B.thuringiensis AFS096960Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS058532Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS045876Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS098170Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS018617Soil (2014)USA, New York26/26TH, H, K, CS, P
B.thuringiensis AFS058843Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS097325Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS040392Plant, Grass leaf (2013)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS006334Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis IBL200Human, healthy human hand (1985) [israelensis-like serovar; bears Photorhabdus/Yersinia-like toxin genes]USA, Maryland26/26TH, H, K, CS, P
B.thuringiensis AFS059039Soil (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS020602Soil (2014)USA, New York26/26TH, H, K, CS, P
B.thuringiensis AFS024266Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS067808Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis BGSC4N1Animal, Insect, Greater Wax Moth/Honeycomb Moth (Galleria mellonella)UK, England26/26TH, H, K, CS, P
B.thuringiensis AFS025510Soil (2014)USA, Iowa26/26TH, H, K, CS, P
B.thuringiensis AFS013213Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.thuringiensis AFS060054Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS011659Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.thuringiensis AFS022086Soil (2014)USA, New York26/26TH, H, K, CS, P
B.thuringiensis AFS031814Soil (2014)USA, New York25/26TH, H, CS, P, mbl, mdh, muts, pyca1, rpob
B.thuringiensis AFS041525Plant, core (2014)USA, North Carolina25/26TH, K, CS, P, ftsa, pyre, succ
B.thuringiensis AFS055708Plant, core (2014)USA, North Carolina25/26TH, H, K, P, clpc, dinb, gdpd, purf
B.thuringiensis BGSC4AP1(1989)Japan25/26TH, H, K, P, clpc, gdpd, purf, yhfl
B.thuringiensis AFS085829Plant, core (2014)USA, North Carolina25/26TH, H, CS, P, mbl, mdh, muts, pyca1, rpob
B.thuringiensis AFS012085Plant, Corn root (2014)USA, Iowa25/26TH, H, CS, P, gyrb, mbl, mdh, muts, pyca1
B.thuringiensis AFS086961Soil (2014)USA, New York25/26TH, K, CS, P, ftsa, pyre, succ
B.cereus FSLK6-0040Dairy products, Laboratory Heat Treated Raw Milk (2012)USA, New York25/26K, CS, P, ccpa, ftsa, glpt, pyre, recf, succ
B.thuringiensis AFS085496Plant, core (2014)USA, North Carolina25/26TH, K, CS, P, ftsa, pyre, recf
B.thuringiensis AFS006923Soil (2014)USA, North Carolina25/26TH, H, K, P, clpc, dinb, gdpd, yhfl
B.thuringiensis AFS066175Plant, core (2014)USA, North Carolina25/26TH, H, K, P, clpc, dinb, gdpd, yhfl
B.thuringiensis AFS034546Plant, Soybean root (2014)USA, Minnesota24/26K, CS, P, adk, ftsa, pyre, recf, succ
B.thuringiensis AFS036336Plant, core (2014)USA, North Carolina24/26K, CS, adk, ccpa, ftsa, glpt, gmk, ilvd, pta, purh, pyca2, pyre, recf, tpi
B.thuringiensis AFS085011Plant, core (2014)USA, North Carolina24/26TH, H, CS, gmk, gyrb, mbl, mdh, purh, pyca1, rpob, tpi
B.thuringiensis AFS019518Plant, Soybean core (2014)USA, Iowa23/26CS, P, ccpa, ftsa, glpt, gyrb, muts, pyca1, pyre, recf, rpob, succ
B.thuringiensis AFS057244Soil (2014)USA, New York22/26K, CS, adk, ccpa, ftsa, pta, purh, pyca2, pyre, recf, succ, tpi
B.thuringiensis IBL1115Soil (1986) [bears Photorhabdus/Yersinia-like toxin genes]Iceland7/7P
B.thuringiensis IBL90Soil (1987) [bears Photorhabdus/Yersinia-like toxin genes]USA, Wyoming7/7P
B.thuringiensis IBL26Soil (1987) [bears Photorhabdus/Yersinia-like toxin genes]USA, Wisconsin7/7P
B.thuringiensis IBL950Soil (1983) [bears Photorhabdus/Yersinia-like toxin genes]USA, North Carolina7/7P
B.thuringiensis IBL1140Soil (1986) [bears Photorhabdus/Yersinia-like toxin genes]Norway7/7P
B.thuringiensis IBL3790Soil (2009)USA, Maryland7/7P
B.c_group KW10[Children-s Hospital Oakland Research Institute (CHORI)]USA, California7/7P
B.thuringiensis IBL888Soil (1986) [bears Photorhabdus/Yersinia-like toxin genes]Iceland7/7P
B.thuringiensis IBL110Soil (1983) [bears Photorhabdus/Yersinia-like toxin genes]USA, New York7/7P
B.thuringiensis IBL3788Soil (2009)USA, Maryland7/7P
B.c_group KW37[Children-s Hospital Oakland Research Institute (CHORI)]USA, California7/7P
B.thuringiensis K14_5790(2014)Korea (South)7/7P
B.thuringiensis IBL54Soil (1987) [bears Photorhabdus/Yersinia-like toxin genes]USA, Montana7/7P
B.thuringiensis IBL3789Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL61Soil (1987) [bears Photorhabdus/Yersinia-like toxin genes]USA, Montana7/7P


18 isolate(s) sharing MLST alleles in supercluster 36

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.weihenstephanensis GOE7#2Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)Germany, Goettingen26/26TH, H, K, CS, P
B.weihenstephanensis GOE13Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)Germany, Goettingen26/26TH, H, K, CS, P
B.weihenstephanensis GOE1#2Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)Germany, Goettingen26/26TH, H, K, CS, P
B.weihenstephanensis GOE6#2Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)Germany, Goettingen26/26TH, H, K, CS, P
B.weihenstephanensis GOE3#2Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)Germany, Goettingen26/26TH, H, K, CS, P
B.weihenstephanensis GOE11Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)Germany, Goettingen26/26TH, H, K, CS, P
B.weihenstephanensis ADRIAI21(1991)France26/26TH, H, K, CS, P
B.weihenstephanensis GOE4#2Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)Germany, Goettingen26/26TH, H, K, CS, P
B.weihenstephanensis GOE12Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)Germany, Goettingen26/26TH, H, K, CS, P
B.weihenstephanensis GOE5#2Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)Germany, Goettingen26/26TH, H, K, CS, P
B.weihenstephanensis GOE2#2Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)Germany, Goettingen25/26TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.c_group BAG6O-2SoilUSA, Massachusetts, Boston25/26TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.c_group E5i2Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group D10-15.B.iSoil (2006)UK7/7P
B.thuringiensis PLBB29/2Soil (2012)Poland7/7P
B.c_group A4g4Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group E2i5Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.cereus KBCH8Soil, Forest soil (2000)France, Versailles6/6CS


5 isolate(s) sharing MLST alleles in supercluster 37

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.pseudomycoides AFS070925Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.pseudomycoides AFS018356Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.pseudomycoides AFS009013Plant, Corn leaf (2014)USA, Illinois26/26TH, H, K, CS, P
B.pseudomycoides AFS099456Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.pseudomycoides AFS040159Plant, Soybean root (2014)USA, Missouri24/26TH, K, CS, ftsa, gmk, ilvd, recf, succ, tpi


6 isolate(s) sharing MLST alleles in supercluster 38

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus LCT-BC235Other, culture sent to space aboard the Shenzhou-8 spacecraft; isolated after space flight 26/26TH, H, K, CS, P
B.cereus LCT-BC25Other, culture sent to space aboard the Shenzhou-8 spacecraft; isolated after space flight 26/26TH, H, K, CS, P
B.cereus LCT-BC244  26/26TH, H, K, CS, P
B.cereus TS2Other, Saltern sediment (2014)India, Tamil Nadu, Tuticorin (Thoothukudi)24/26H, K, P, clpc, dinb, gdpd, purf
B.cereus MOD1Bc107Other, Oxytetracycline Medicated Fish Feed (2006)USA, Maryland16/26K, adk, ccpa, clpc, dinb, ftsa, gdpd, gmk, purh, pyca2, recf
B.cereus 2013-10Dairy products, milk productsChina7/7P


43 isolate(s) sharing MLST alleles in supercluster 39

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus 13061  26/26TH, H, K, CS, P
B.cereus WSBC10035Dairy products, pasteurized milk (1993)Germany26/26TH, H, K, CS, P
B.cereus MHI86Food, infant foodGermany26/26TH, H, K, CS, P
B.cereus MOD1Bc138Food, Dietary Supplements (2015)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc224Food, food product (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus B4086Food, boiled rice (2012)Netherlands26/26TH, H, K, CS, P
B.cereus MOD1Bc140Food, Dietary Supplements (2015)USA, Maryland26/26TH, H, K, CS, P
B.c_group AND1407Food 26/26TH, H, K, CS, P
B.cereus MB.1Food (2014)Germany, Munich26/26TH, H, K, CS, P
B.cereus MOD1Bc67Other, Powdered Infant Formula (2015)USA, Maryland26/26TH, H, K, CS, P
B.cereus F4429/71Food, vanilla pudding (1971) [diarrheal food poisoning outbreak]Netherlands26/26TH, H, K, CS, P
B.cereus MOD1Bc105Other, Oxytetracycline Medicated Fish Feed (2006)USA, Maryland26/26TH, H, K, CS, P
B.thuringiensis BGSC4H1Animal, Insect, Prominent moth (Notodonta aniera)Czechoslovakia or USSR26/26TH, H, K, CS, P
B.cereus MOD1Bc99Other, Oxytetracycline Medicated Fish Feed (2006)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc119Food, Whole Black Pepper (2015)USA, Maryland25/26TH, H, K, CS, gmk, ilvd, purh
B.cereus RIVMBC90Human, faeces/stools (1999) [diarrheal food poisoning outbreak]Netherlands25/26K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus FSLW8-0003Dairy products, Ricotta/mozzarella whey (2012)USA, New York25/26H, K, P, clpc, dinb, gdpd, purf, yhfl
B.cereus MB.17Food (2014)Germany, Munich25/26TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.cereus MOD1Bc113Other, Powdered Infant Formula (2015)USA, Maryland25/26TH, H, K, P, dinb, gdpd, purf, yhfl
B.c_group MSX-D12  25/26H, K, CS, gmk, ilvd, pta, purh, pyca2, tpi
B.cereus H3081.97Food (1997) [emetic toxin/cereulide producer; from the same food poisoning outbreak as isolates H3074.97 and H3076.97; outbreak linked to rice]USA, Texas22/22P, ccpa, clpc, dinb, ftsa, glpt, gyrb, mbl, mdh, muts, panc, purf, pyca1, pyre, recf, yhfl
B.cereus AFS076904Plant, Corn root (2013)USA, Iowa22/26TH, P, clpc, dinb, gdpd, gyrb, mdh, muts, purf, pyca1, recf, rpob, succ
B.cereus EGD-AQ9Other, sewage (2016)India, Maharashtra, Nagpur17/26H, gmk, gyrb, ilvd, mdh, pta, purh, pyca1, pyca2, rpob, yhfl
B.cereus CC-1Other, marine sediments (2015)China, Bo Hai, Liaodong Bay, Panjin17/26CS, adk, ccpa, ftsa, gmk, pta, purh, pyca1, pyca2, pyre, rpob, succ
B.c_group AH840[sequences conflicting with isolate T01001] 11/11TH, H
B.cereus B06_007Human, cutaneousNorway7/7TH
B.cereus BFDA96178Food (2007)Taiwan, Taoyuan county7/7P
B.cereus NC1274Human, vomit (1997) [human vomiting, emetic toxin/cereulide producer]India7/7P
B.cereus NC1276Food, rice (1997) [emetic toxin/cereulide producer]India7/7P
B.thuringiensis BGSC4I3 USA7/7P
B.cereus B06_003Human, bloodNorway7/7TH
B.cereus H3076.97Human, faeces/stools (1997) [emetic toxin/cereulide producer; from the same food poisoning outbreak as isolates H3074.97 and H3081.97; outbreak linked to rice]USA, Texas7/7P
B.cereus NC610Other, environmental (1990) [emetic toxin/cereulide producer]Japan7/7P
B.cereus NC526Other, environmental (1983) [emetic toxin/cereulide producer]Japan7/7P
B.cereus BC_28Food, ready-to-eat product (2006)Italy (Northwestern)7/7P
B.cereus NC113Other, environmental (1983) [emetic toxin/cereulide producer]Japan7/7P
B.cereus NC111Food, rice (1983) [emetic toxin/cereulide producer]Japan7/7P
B.cereus B33  7/7P
B.cereus NC-stdFood, rice [emetic toxin/cereulide producer]UK7/7P
B.cereus F00/3086Human, neutropenia in child; Public Health Laboratory (2000)UK, England, Chelmsford7/7P
B.cereus HZ12-67Dairy products, milk products (2012)China7/7P
B.c_group AH1124HumanFrance7/7TH
B.c_group KW2[Children-s Hospital Oakland Research Institute (CHORI)]USA, California7/7P


24 isolate(s) sharing MLST alleles in supercluster 40

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus BDRD-ST24[Biological Defense Research Directorate (BDRD)]USA, Maryland, Rockville26/26TH, H, K, CS, P
B.cereus M13Food, Korean fermented food (2016)Korea (South)26/26TH, H, K, CS, P
B.cereus 16-00187  26/26TH, H, K, CS, P
B.cereus FSLW8-0824Food, Finished RTE food product (2012)USA, New York26/26TH, H, K, CS, P
B.cereus 16-00188  25/26H, K, CS, glpf, gmk, ilvd, purh, pyca2, tpi
B.cereus SJ-S28HumanUSA, Tennessee, Memphis24/25K, CS, ccpa, ftsa, glpf, glpt, gmk, pta, purh, pyca2, pyre, recf, succ, tpi
B.cereus MOD1Bc219Other, Baby Wipes (2016)USA, Maryland24/26H, CS, glpf, gmk, gyrb, ilvd, mdh, muts, purh, pyca1, pyca2, rpob, tpi
B.cereus WSBC10028Dairy products, pasteurized milk (1993) [from the same dairy as isolates WSBC10029, WSBC10030, WSBC10031, WSBC10042, WSBC10201, WSBC10204, WSBC10205, WSBC10206, WSBC10208, and WSBC10211]Germany, Weihenstephan14/14H, P
B.cereus ATCC12480Animal, sheep rumen 12/13P, mbl, mdh, muts, pyca1, rpob
B.cereus BC_8Food, egg product (2006)Italy (Southern)7/7P
B.cereus NC1272Food, pasta (1993) [human diarrhea]Switzerland7/7P
B.cereus F4976Human, lung (1983) [human pneumonia]USA, Oregon7/7P
B.cereus FP17Food, pasta (2002)Italy7/7P
B.cereus BC_27Food, ready-to-eat product (2006)Italy (Northwestern)7/7P
B.cereus NCIB6349(1950) 7/7P
B.cereus NC1216Dairy products, milk products (1996)Japan7/7P
B.cereus BC_37Dairy products, industrial dairy products (2006)Italy (Northeastern)7/7P
B.cereus De1Human, blood (2001)Italy7/7P
B.cereus NC478Food (1983)Japan7/7P
B.cereus BC_4Food, egg product (2006)Italy (Southern)7/7P
B.cereus Cal3Other, board machine (1998)Finland7/7P
B.cereus NC392Human, faeces/stools (1982)Japan7/7P
B.cereus NC383Human, faeces/stools (1982)Japan7/7P
B.cereus NC545Food, rice (1983)Japan7/7P


18 isolate(s) sharing MLST alleles in supercluster 41

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.thuringiensis T02001Animal, Insect, forest tent caterpillar moth (Malacosoma disstria) (1958) [two complete genomes sequenced for this strain with identical MLST sequences]USA26/26TH, H, K, CS, P
B.thuringiensis YBT-020  25/25TH, H, K, CS, ilvd, purh, tpi
B.thuringiensis IBL3268Soil (1984)Nepal7/7P
B.thuringiensis IBL1132Soil (1986)Norway7/7P
B.thuringiensis NCTC4041  7/7P
B.thuringiensis IBL523Soil (1987)USA, California7/7P
B.thuringiensis BGSC4D2[Wild type isolate] 7/7P
B.thuringiensis IBL2408Soil (1985)Spain7/7P
B.thuringiensis IBL480Soil (1986)Sweden7/7P
B.thuringiensis IBL674Soil (1984)India7/7P
B.thuringiensis BGSC4B1[Wild type isolate] 7/7P
B.thuringiensis IBL1489Soil (1985)Spain7/7P
B.thuringiensis BGSC4B5  7/7P
B.thuringiensis IBL535Soil (1988)USA, Maryland7/7P
B.thuringiensis IBL1211Other, snow (1985)USA, Maryland7/7P
B.thuringiensis IBL631Soil (1985)Morocco7/7P
B.thuringiensis IBL3870Soil (1983)USA, Wyoming7/7P
B.thuringiensis IBL1613Soil (1985)Spain7/7P


15 isolate(s) sharing MLST alleles in supercluster 42

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus 2000032803Soil (1963) 7/7P
B.cereus 2002013139  7/7P
B.cereus 2002013140  7/7P
B.cereus 2002013138  7/7P
B.cereus 2002013145  7/7P
B.cereus 2002013146  7/7P
B.cereus 2000032950  7/7P
B.cereus 2000032884  7/7P
B.cereus 2000032847  7/7P
B.cereus 2000032849  7/7P
B.cereus 2000031061  7/7P
B.cereus 2000032947  7/7P
B.cereus 2000032928  7/7P
B.cereus 2000032805  7/7P
B.cereus 2000031062  7/7P


2 isolate(s) sharing MLST alleles in supercluster 43

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.c_group PL28Soil 7/7P
B.c_group A3s10Soil (2002)UK, England, Berkshire7/7P


118 isolate(s) sharing MLST alleles in supercluster 44

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus MOD1Bc234Human, faeces/stools (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus HZBCE-08Food, Fried fish (2015)China, Hangzhou26/26TH, H, K, CS, P
B.cereus HZBCE-01Human, stomach (2015)China, Hangzhou26/26TH, H, K, CS, P
B.cereus MB.15Food (2014)Germany, Munich26/26TH, H, K, CS, P
B.cereus 16-00176  26/26TH, H, K, CS, P
B.cereus B4153Dairy products, milk, (fermented) dairy products and desserts (2012)Netherlands26/26TH, H, K, CS, P
B.c_group IS845/00Animal, MammalsPoland26/26TH, H, K, CS, P
B.cereus 16-00174  26/26TH, H, K, CS, P
B.cereus HZBCE-10Food, pork (2015)China, Hangzhou26/26TH, H, K, CS, P
B.cereus HZBCE-09Food, pork (2015)China, Hangzhou26/26TH, H, K, CS, P
B.cereus F1-15  26/26TH, H, K, CS, P
B.cereus B4085Food (2013)Netherlands26/26TH, H, K, CS, P
B.cereus MOD1Bc233Human, faeces/stools (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MB.16Food (2014)Germany, Munich26/26TH, H, K, CS, P
B.c_group IS075Animal, MammalsPoland26/26TH, H, K, CS, P
B.c_group MSX-A12  26/26TH, H, K, CS, P
B.cereus BDRD-ST26[Biological Defense Research Directorate (BDRD)]USA, Maryland, Rockville26/26TH, H, K, CS, P
B.cereus NC7401Human, faeces/stools or vomit (1974 or 1994) [human vomiting, emetic food poisoning outbreak, emetic toxin/cereulide producer]Japan26/26TH, H, K, CS, P
B.cereus B4116Food (2013)Netherlands26/26TH, H, K, CS, P
B.cereus 16-00183  26/26TH, H, K, CS, P
B.cereus F4810/72Human, vomit (1972) [emetic food poisoning outbreak; human vomiting; reference emetic toxin/cereulide producer]UK26/26TH, H, K, CS, P
B.cereus MB.8Food (2014)Germany, Munich26/26TH, H, K, CS, P
B.cereus MOD1Bc225Human, faeces/stools (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus HZBCE-07Food, Fried fish (2015)China, Hangzhou26/26TH, H, K, CS, P
B.cereus MB.21Food (2014)Germany, Munich26/26TH, H, K, CS, P
B.cereus NVH0075/95Food, stew with vegetables, food poisoning (1995) (1995) [diarrheal food poisoning outbreak]Norway26/26TH, H, K, CS, P
B.cereus MOD1Bc220Food, food product (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus HZBCE-02Human, stomach (2015)China, Hangzhou26/26TH, H, K, CS, P
B.cereus SJ-S30HumanUSA, Tennessee, Memphis26/26TH, H, K, CS, P
B.c_group IS195Animal, MammalsPoland26/26TH, H, K, CS, P
B.cereus BCE-01Human, stomach (2015)China, Hangzhou26/26TH, H, K, CS, P
B.cereus UBA5641  25/25H, K, CS, gmk, ilvd, pta, purh, pyca2, tpi
B.cereus B4078(2012)Netherlands25/26TH, H, K, P, clpc, dinb, purf, yhfl
B.cereus MB.8-1Food (2014)Germany, Munich25/26TH, H, K, P, clpc, dinb, purf, yhfl
B.cereus MB.20Food (2014)Germany, Munich25/26TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.c_group AH817Human, periodontitis (1995)Norway, Akershus11/11TH, H
B.cereus XA12-5Dairy products, milk products (2012)China7/7P
B.cereus F3080B/87Food, chicken korma and rice (1987) [human vomiting, emetic food poisoning outbreak, emetic toxin/cereulide producer]UK7/7P
B.cereus CR62-4Food, rice (2013) [human vomiting, emetic toxin/cereulide producer]China, Hubei Province7/7P
B.cereus 2002734478Human, blood (2004) [human septicaemia]USA7/7P
B.cereus NC1363Human, faeces/stools (2001) [human vomiting, emetic toxin/cereulide producer]Japan7/7P
B.cereus E6345Human, lung (1979)USA, New Hampshire7/7P
B.cereus CR15-1Food, rice (2013) [human vomiting, emetic toxin/cereulide producer]China, Hubei Province7/7P
B.cereus H2573.97Food (1997) [emetic toxin/cereulide producer; from the same food poisoning outbreak as isolate H2576.97; outbreak linked to rice]UK, England7/7P
B.cereus CR43-1Food, rice (2013) [human vomiting, emetic toxin/cereulide producer]China, Hubei Province7/7P
B.cereus H9312Human, vomit (2000) [food poisoning outbreak, emetic toxin/cereulide producer]USA, Minnesota7/7P
B.cereus 192Food, rice (2011)China, Zhejiang Province7/7TH
B.cereus CR27-2Food, rice (2013) [human vomiting, emetic toxin/cereulide producer]China, Hubei Province7/7P
B.cereus F665Human, faeces/stools (1981) [emetic toxin/cereulide producer; from the same food poisoning outbreak as isolates F663, F666, and F667; outbreak linked to rice]USA, North Carolina7/7P
B.cereus IF1-1Food (2014) [emetic toxin/cereulide producer]China, Hubei Province7/7P
B.cereus IF60-2Food (2014) [emetic toxin/cereulide producer]China, Hubei Province7/7P
B.cereus CR24-1Food, rice (2013) [human vomiting, emetic toxin/cereulide producer]China, Hubei Province7/7P
B.cereus B05_010HumanFrance7/7TH
B.cereus H2576.97Food (1997) [emetic toxin/cereulide producer; from the same food poisoning outbreak as isolate H2573.97; outbreak linked to rice]UK, England7/7P
B.cereus NC622Other, environmental (1990) [emetic toxin/cereulide producer]Japan7/7P
B.cereus CR5-1Food, rice (2013) [human vomiting, emetic toxin/cereulide producer]China, Hubei Province7/7P
B.cereus NC-I55Human, faeces/stools (1980) [human vomiting, emetic toxin/cereulide producer]Japan7/7P
B.cereus NC524Other, environmental (1983) [emetic toxin/cereulide producer]Japan7/7P
B.c_group XA13-176Food, rice (2013)China, Shanxi Province7/7P
B.cereus B06_008Human, bloodFrance7/7TH
B.cereus NC1291Dairy products, milk products (1999) [human vomiting, emetic toxin/cereulide producer]Japan7/7P
B.cereus IF7-1Food (2014) [emetic toxin/cereulide producer]China, Hubei Province7/7P
B.cereus SX15-22Dairy products, milk products (2015)China7/7P
B.cereus CR27-1Food, rice (2013) [human vomiting, emetic toxin/cereulide producer]China, Hubei Province7/7P
B.cereus CR63-3Food, rice (2013) [human vomiting, emetic toxin/cereulide producer]China, Hubei Province7/7P
B.cereus IF78-2Food (2014) [emetic toxin/cereulide producer]China, Hubei Province7/7P
B.cereus S74Food, fried rice 7/7P
B.cereus BGSC6A6Other, used in probiotic SUBTYL [proposed as B.cereus var. vietnami or a new species B.vietnami] 7/7P
B.thuringiensis IBL1297Soil (1990)USA, Maryland7/7P
B.cereus H9311Food (2000) [food poisoning outbreak, emetic toxin/cereulide producer]USA, Minnesota7/7P
B.cereus NC541Other, environmental (1983) [emetic toxin/cereulide producer]Japan7/7P
B.cereus H3074.97Human, faeces/stools (1997) [emetic toxin/cereulide producer; from the same food poisoning outbreak as isolates H3076.97 and H3081.97; outbreak linked to rice]USA, Texas7/7P
B.cereus AK14-66Dairy products, milk products (2014)China7/7P
B.cereus SX15-16Dairy products, milk products (2015)China7/7P
B.cereus SDAGr177aDairy products, raw milk (1998) [emetic toxin/cereulide producer]Sweden7/7H
B.cereus F95/9130Other, washing machine water rack, Birmingham Women-s Hospital (1995)UK, England, Birmingham7/7P
B.cereus F663Food (1981) [emetic toxin/cereulide producer; from the same food poisoning outbreak as isolates F665, F666, and F667; outbreak linked to rice]USA, North Carolina7/7P
B.cereus NC1247Food, rice (1996) [human vomiting, emetic toxin/cereulide producer]Japan7/7P
B.cereus CR27-3Food, rice (2013) [human vomiting, emetic toxin/cereulide producer]China, Hubei Province7/7P
B.cereus IF5-1Food (2014) [emetic toxin/cereulide producer]China, Hubei Province7/7P
B.cereus NC92Human, faeces/stools (1978) [emetic toxin/cereulide producer]Japan7/7P
B.cereus CBC_99014Human, vomitingJapan7/7P
B.cereus WSBC10879Food, rice [emetic toxin/cereulide producer] 7/7H
B.cereus F667Human, faeces/stools (1981) [emetic toxin/cereulide producer; from the same food poisoning outbreak as isolates F663, F665, and F666; outbreak linked to rice]USA, North Carolina7/7P
B.cereus B06_018Human, peritonealFrance7/7TH
B.cereus IF24-2Food (2014) [emetic toxin/cereulide producer]China, Hubei Province7/7P
B.cereus IF51-1Food (2014) [emetic toxin/cereulide producer]China, Hubei Province7/7P
B.c_group XA13-310Food, rice (2013)China, Shanxi Province7/7P
B.cereus RIVMBC62Human, Vomit (1996) [emetic food poisoning outbreak, emetic toxin/cereulide producer]Netherlands7/7H
B.cereus NC1237Food, rice (1996) [emetic toxin/cereulide producer]Japan7/7P
B.cereus H9310Human, vomit (2000) [food poisoning outbreak, emetic toxin/cereulide producer]USA, Minnesota7/7P
B.cereus NC-G15Human, faeces/stools (1995) [human vomiting, emetic toxin/cereulide producer]Japan7/7P
B.cereus NC199Other, environmental (1979) [emetic toxin/cereulide producer]Japan7/7P
B.cereus IF46-1Food (2014) [emetic toxin/cereulide producer]China, Hubei Province7/7P
B.cereus SX16-44Dairy products, milk products (2016)China7/7P
B.cereus F3942/87Food, boiled rice (1987) [human vomiting, emetic food poisoning outbreak, emetic toxin/cereulide producer]UK7/7P
B.cereus S710  7/7P
B.cereus BC_7Food, egg product (2006)Italy (Southern)7/7P
B.cereus BGSC6A18[Wild type isolate; USSR Research Institute for Antibiotics] 7/7P
B.cereus NC444Other, environmental (1982) [emetic toxin/cereulide producer]Japan7/7P
B.c_group XA13-312Food, rice (2013)China, Shanxi Province7/7P
B.cereus BFDA96139Food (2007)Taiwan, Taipei county7/7P
B.cereus G0501Food, rice (2005) [human vomiting, emetic toxin/cereulide producer]Japan7/7P
B.cereus CBC_04003Human, vomitingJapan7/7P
B.cereus IH41385Human, Dialysis liquid (1998) [connected to illness, emetic toxin/cereulide producer]Finland7/7H
B.cereus BFDA96146(2007)Taiwan, Taipei county7/7P
B.cereus NC1239Food, rice (1996) [emetic toxin/cereulide producer]Japan7/7P
B.cereus SX15-28Dairy products, milk products (2015)China7/7P
B.cereus NC529Other, environmental (1983) [emetic toxin/cereulide producer]Japan7/7P
B.c_group XA13-110Food, rice (2013)China, Shanxi Province7/7P
B.c_group AK16-112Food, rice (2013)China, Shanxi Province7/7P
B.cereus F3351/87Human, faeces/stools (1987) [emetic food poisoning outbreak, emetic toxin/cereulide producer]UK7/7H
B.cereus NC604Other, environmental (1990) [emetic toxin/cereulide producer]Japan7/7P
B.cereus CBC_04001Human, vomitingJapan7/7P
B.cereus CR110-1(2013) [human vomiting, emetic toxin/cereulide producer]China, Hubei Province7/7P
B.cereus BFDA96175Food, rice (2007)Taiwan, Taoyuan county7/7P
B.cereus IF26-1Food (2014) [emetic toxin/cereulide producer]China, Hubei Province7/7P
B.cereus CR73-1Food, rice (2013) [human vomiting, emetic toxin/cereulide producer]China, Hubei Province7/7P


24 isolate(s) sharing MLST alleles in supercluster 45

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus ATCC10987#1Dairy products, Cheese (1930)Canada26/26TH, H, K, CS, P
B.cereus KS100BcFood service operation (2014)Korea (South), Gyeonggi-do26/26TH, H, K, CS, P
B.cereus F3162/04Human, faeces/stools (2004) [clinical isolate] 26/26TH, H, K, CS, P
B.cereus MOD1Bc111Other, Powdered Infant Formula (2015)USA, Maryland26/26TH, H, K, CS, P
B.cereus B06_009Human, cerebrospinal fluid (2008)France, Paris25/25TH, H, K, P, clpc, dinb, purf, yhfl
B.cereus FSLW8-0050Other, Condensed food product from evaporator (2012)USA, New York25/26TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.c_group MCCC1A06192Other, bottom seawater (2009)Pacific Ocean7/7P
B.c_group MCCC1A06194Other, middle seawater (2009)Pacific Ocean7/7P
B.c_group MCCC1A06939Other, bottom seawater (2010)Pacific Ocean7/7P
B.cereus MM_2Food (2003)USA7/7P
B.c_group MCCC1A06191Other, sediments (2009)Pacific Ocean7/7P
B.c_group MCCC1A06193Other, sediments (2009)Pacific Ocean7/7P
B.c_group MCCC1A06941Other, middle seawater (2010)Pacific Ocean7/7P
B.c_group MCCC1A06928Other, bottom seawater (2010)Pacific Ocean7/7P
B.c_group MCCC1A06940Other, bottom seawater (2010)Pacific Ocean7/7P
B.c_group MCCC1A06188Other, sediments (2009)Pacific Ocean7/7P
B.c_group MCCC1A06942Other, bottom seawater (2010)Pacific Ocean7/7P
B.c_group MCCC1A06937Other, surface seawater (2010)Pacific Ocean7/7P
B.cereus BGSC6A40Dairy products, milk products (1998) [sequences conflicting with isolate M21]Finland7/7P
B.c_group MCCC1A06189Other, bottom seawater (2009)Pacific Ocean7/7P
B.cereus BFDA96145Food (2007)Taiwan, Taipei county7/7P
B.cereus B309[German Armed Forces (Bundeswehr) Institute of Microbiology]Germany, Munich7/7H
B.c_group MCCC1A06182Other, bottom seawater (2009)Pacific Ocean7/7P
B.c_group MCCC1A06187Other, surface seawater (2009)Pacific Ocean7/7P


4 isolate(s) sharing MLST alleles in supercluster 46

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.thuringiensis BGSC4XX2  7/7P
B.thuringiensis BGSC4XX1  7/7P
B.thuringiensis BGSC4XX3Animal, Insect, dead larvaArgentina7/7P
B.thuringiensis BGSC4AY1Food, black pepper powderBrazil7/26P


28 isolate(s) sharing MLST alleles in supercluster 47

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.thuringiensis BR58Plant, stored grain (2000)Brazil, Londrina26/26TH, H, K, CS, P
B.thuringiensis 147Soil (2014)Brazil, Tocantins State26/26TH, H, K, CS, P
B.thuringiensis BGSC4Q1Animal, Insect, Culicidae (Mosquitoes) larvae (1977) [two complete genomes sequenced for this strain with identical MLST sequences]Israel26/26TH, H, K, CS, P
B.thuringiensis UBA3967  26/26TH, H, K, CS, P
B.thuringiensis HD1002Other, SewageIsrael26/26TH, H, K, CS, P
B.thuringiensis BGSC4AX1SoilUSSR26/26TH, H, K, CS, P
B.thuringiensis IBL4222Animal, cat-s paw (1985) [israelensis-like serovar]USA, Maryland26/26TH, H, K, CS, P
B.thuringiensis BGSC4Q7Soil (1976) [plasmid-cured; acrystalliferous; widely used as a recombination host]Israel26/26TH, H, K, CS, P
B.thuringiensis HD789  26/26TH, H, K, CS, P
B.thuringiensis ATCC35646Other, raw sewage pond (1977)Israel, Kibbutz Hulda21/24CS, adk, ccpa, ftsa, glpt, gmk, ilvd, mbl, muts, pta, purh, pyca1, pyca2, pyre, recf, rpob
B.thuringiensis T05a030Soil (1987)Iraq7/7P
B.thuringiensis IBL3241Soil (1986)Norway7/7P
B.thuringiensis IBL117Soil (1983)USA, Wyoming7/7P
B.thuringiensis IBL184Soil (1986)USA, Washington D.C.7/7P
B.thuringiensis CCCT2259(1993)Brazil7/7P
B.thuringiensis IBL416Soil (1985)China7/7P
B.thuringiensis BGSC4Q3Animal, Insect, Culicidae (Mosquitoes)Israel7/7P
B.thuringiensis IBL621Soil (1987)Egypt7/7P
B.thuringiensis IBL431Soil (1985)Spain7/7P
B.thuringiensis T08025Other, grain silo dust (1988)France7/7P
B.thuringiensis IBL439Soil (1985)Morocco7/7P
B.thuringiensis DSM5815Soil, sandy loam garden soilUSA7/7P
B.thuringiensis KBBC1Soil, Forest soil (2000)France, Versailles6/6CS
B.thuringiensis KBBD6Soil, Forest soil (2000)France, Versailles6/6CS
B.thuringiensis KBBG4Soil, Forest soil (2000)France, Versailles6/6CS
B.thuringiensis KBBD7Soil, Forest soil (2000)France, Versailles6/6CS
B.thuringiensis KBBG5Soil, Forest soil (2000)France, Versailles6/6CS
B.thuringiensis KBBE4Soil, Forest soil (2000)France, Versailles6/6CS


2 isolate(s) sharing MLST alleles in supercluster 48

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus S6616Soil (2007)USA, Maryland, Rockville7/7P
B.cereus S6570aSoil (2007)USA, Maryland, Rockville7/7P


2 isolate(s) sharing MLST alleles in supercluster 49

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.toyonensis AFS015017Plant, Corn core (2014)USA, Illinois21/26CS, P, ccpa, ftsa, glpt, gyrb, mdh, muts, pyca1, succ
B.toyonensis AFS071669Plant, Corn core (2014)USA, Illinois21/26CS, P, ccpa, ftsa, glpt, gyrb, mdh, muts, pyca1, succ


2 isolate(s) sharing MLST alleles in supercluster 50

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus 140099.DHuman, wound infection (2005)UK, Scotland7/7P
B.cereus SPS2Other, kaolin (1999) 7/7P


2 isolate(s) sharing MLST alleles in supercluster 51

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus Bc219 Brazil7/7P
B.cereus LFB1131Animal, InsectCzechoslovakia7/7P


11 isolate(s) sharing MLST alleles in supercluster 52

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.wiedmannii AFS011149Plant, Soybean leaf (2014)USA, Iowa26/26TH, H, K, CS, P
B.wiedmannii AFS074234Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.wiedmannii AFS079268Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.wiedmannii AFS009340Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.wiedmannii AFS024429Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.wiedmannii AFS013151Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.wiedmannii AFS000938Plant, Corn core (2014)USA, Illinois25/26TH, H, CS, P, gyrb, mbl, mdh, muts, rpob
B.wiedmannii AFS029838Plant, Corn core (2014)USA, Illinois25/26TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.wiedmannii AFS064234Plant, Soybean core (2014)USA, Iowa25/26TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.wiedmannii AFS023251Plant, Soybean core (2014)USA, Iowa25/26TH, H, K, P, clpc, dinb, gdpd, yhfl
B.wiedmannii AFS034073Plant, Soybean core (2014)USA, Iowa25/26TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob


10 isolate(s) sharing MLST alleles in supercluster 53

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.thuringiensis IBL3780Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3785Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3729Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3776Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3689Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3760Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3725Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3779Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3719Soil (2009)USA, Maryland7/7P
B.thuringiensis IBL3781Soil (2009)USA, Maryland7/7P


8 isolate(s) sharing MLST alleles in supercluster 54

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus HWW274-2Dairy products, Milk powder (2004)Germany26/26TH, H, K, CS, P
B.cereus FSLW8-0275Dairy products, Raw liquid milk and whey perm (2012)USA, New York26/26TH, H, K, CS, P
B.cereus B4087Food, pea soup (2012)Netherlands25/26TH, H, K, P, dinb, gdpd, purf, yhfl
B.c_group HZ15-64Food, rice (2016)China, Shanxi Province7/7P
B.cereus HZ15-Y105Food, pasta (2015)China, Shaanxi Province7/7P
B.cereus 2012-41Dairy products, milk productsChina7/7P
B.cereus HZ15-Y066Food (2015)China, Shaanxi Province7/7P
B.cereus HZ15-Y064Food (2015)China, Shaanxi Province7/7P


19 isolate(s) sharing MLST alleles in supercluster 55

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.wiedmannii FSLM7-0938Dairy products, raw milk (2011)USA, New York26/26TH, H, K, CS, P
B.wiedmannii FSLH8-0032Dairy food in process (2005)USA, New York26/26TH, H, K, CS, P
B.wiedmannii AFS052419Soil (2014)USA, New York26/26TH, H, K, CS, P
B.wiedmannii FSLH7-0353Food, finished ready-to-eat dairy food product (2005)USA, New York26/26TH, H, K, CS, P
B.wiedmannii FSLM7-1251Dairy products, raw milk (2011)USA, New York26/26TH, H, K, CS, P
B.wiedmannii FSLW8-0169Dairy products, Raw milk (2012)USA, New York24/26H, CS, glpf, gmk, gyrb, ilvd, mdh, muts, purh, pyca1, pyca2, rpob, tpi
B.wiedmannii MOD1Bc223Food, food product (2016)USA, Maryland24/26K, CS, P, adk, ftsa, glpt, recf, succ
B.cereus KPR-7A  24/26TH, H, CS, gmk, gyrb, ilvd, mdh, muts, pyca1, rpob, tpi
B.c_group BAG5X2-1SoilUSA, Massachusetts, Boston24/26TH, H, CS, gyrb, ilvd, mdh, muts, purh, pyca1, rpob, tpi
B.wiedmannii FSLM7-0044Dairy products, raw milk (2011)USA, New York23/26TH, H, K, clpc, dinb, gdpd, gmk, tpi, yhfl
B.cereus INRASAp  23/26TH, H, P, clpc, dinb, gyrb, mdh, muts, purf, pyca1, rpob
B.cereus 14294-3Food, ice cream (2004)Germany23/26TH, CS, P, ftsa, gyrb, mdh, pyca1, recf, rpob, succ
B.wiedmannii FSLP2-0558Dairy food in process (2009)USA, New York23/26TH, H, P, clpc, dinb, gdpd, gyrb, mdh, muts, pyca1, rpob
B.wiedmannii FSLP4-0569Dairy food in process (2010)USA, New York22/26CS, ccpa, ftsa, glpf, gmk, gyrb, mdh, muts, pta, purh, pyca1, pyca2, pyre, recf, rpob, succ, tpi
B.c_group AH519Soil, strawberry field (1993)Norway, Moss11/11TH, H
B.c_group AH572Soil, beech grove (1993)Norway, Moss11/11TH, H
B.c_group AH536Soil, strawberry field (1993)Norway, Moss11/11TH, H
B.thuringiensis PLBB54/4Soil (2012)Poland7/7P
B.thuringiensis PLBB08/1Soil (2012)Poland7/7P


2 isolate(s) sharing MLST alleles in supercluster 56

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus MOD1Bc229Food, food product (2016)USA, Maryland26/26TH, H, K, CS, P
B.cereus MOD1Bc222Food, food product (2016)USA, Maryland26/26TH, H, K, CS, P


4 isolate(s) sharing MLST alleles in supercluster 57

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus ISSFR-3FOther, Air (2011) 26/26TH, H, K, CS, P
B.cereus JEM-2Other, Surface (2009) 26/26TH, H, K, CS, P
B.cereus ISSFR-9FOther, Air (2011) 26/26TH, H, K, CS, P
B.cereus ISSFR-23FOther, Air from the International Space Station (ISS) (2011) 25/25H, K, P, clpc, dinb, gdpd, purf, yhfl


3 isolate(s) sharing MLST alleles in supercluster 58

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus NC401Food (1982)Japan7/7P
B.cereus m1280Food, vegetable soup (1987)Brazil7/7P
B.cereus WSBC10249Soil (1999)Denmark7/7P


3 isolate(s) sharing MLST alleles in supercluster 59

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.c_group BGSC4AZ2  7/7P
B.c_group KW23[Children-s Hospital Oakland Research Institute (CHORI)]USA, California7/7P
B.thuringiensis BGSC4AZ1(1984)Czechoslovakia7/26P


19 isolate(s) sharing MLST alleles in supercluster 60

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.pseudomycoides AFS013396Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.pseudomycoides AFS074367Soil (2014)USA, New York26/26TH, H, K, CS, P
B.pseudomycoides AFS058668Soil (2014)USA, North Carolina26/26TH, H, K, CS, P
B.pseudomycoides AFS055788Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.pseudomycoides AFS074519Soil (2014)USA, Iowa26/26TH, H, K, CS, P
B.pseudomycoides AFS042788Soil (2014)USA, Iowa26/26TH, H, K, CS, P
B.pseudomycoides FSLH8-0534Soil (2006) [soil adjacent to bovine farm]USA26/26TH, H, K, CS, P
B.pseudomycoides AFS028766Plant, Corn plant (2014)USA, North Carolina26/26TH, H, K, CS, P
B.pseudomycoides AFS040883Soil (2014)USA, North Carolina26/26TH, H, K, CS, P
B.pseudomycoides AFS098856Soil (2014)USA, New York26/26TH, H, K, CS, P
B.pseudomycoides AFS003288Plant, Corn leaf (2014)USA, Illinois26/26TH, H, K, CS, P
B.pseudomycoides AFS092115Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.pseudomycoides AFS084126Soil (2014)USA, New York26/26TH, H, K, CS, P
B.pseudomycoides AFS008599Soil (2014)USA, Iowa26/26TH, H, K, CS, P
B.pseudomycoides DSM12442SoilGhana or Sweden or USA26/26TH, H, K, CS, P
B.pseudomycoides AFS048805Plant, Corn core (2014)USA, Illinois25/26TH, H, K, P, clpc, dinb, gdpd, purf
B.pseudomycoides AFS037117Soil (2014)USA, Iowa25/26TH, H, K, P, clpc, dinb, gdpd, yhfl
B.pseudomycoides AFS054473Plant, Corn core (2014)USA, North Carolina21/26H, clpc, gdpd, glpf, gmk, gyrb, mbl, mdh, panc, purf, purh, pyca1, pyca2, rpob, yhfl
B.c_group FSLK6-0220Animal, cattleUSA7/7P


28 isolate(s) sharing MLST alleles in supercluster 61

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.wiedmannii AFS014747Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.wiedmannii AFS057001Soil (2014)USA, New York26/26TH, H, K, CS, P
B.wiedmannii AFS053866Plant, Corn leaf (2014)USA, Illinois26/26TH, H, K, CS, P
B.cereus RIVMBC126#1Human, faeces/stools (1999) [diarrheal food poisoning; two complete genomes sequenced for this strain with different MLST sequences; strain sequenced by INRA-MIG, Unit MIG (Mathematique, Informatique et Genome), Jouy en Josas, France; sequences conflicting with isolate RIVMBC126#2]Netherlands26/26TH, H, K, CS, P
B.wiedmannii AFS050757Plant, Soybean root (2014)USA, Iowa26/26TH, H, K, CS, P
B.wiedmannii AFS022373Soil (2014)USA, New York26/26TH, H, K, CS, P
B.wiedmannii RIVMBC126#2Human, faeces/stools (1999) [diarrheal food poisoning; two complete genomes sequenced for this strain with different MLST sequences; strain sequenced by Lehrstuhl fuer Mikrobielle Oekologie, Technische Universitaet Muenchen, Freising, Germany; sequences conflicting with isolate RIVMBC126#1]Netherlands26/26TH, H, K, CS, P
B.wiedmannii AFS026518Plant, soybean seed (2014)USA, Iowa25/26TH, H, K, P, clpc, dinb, gdpd, yhfl
B.wiedmannii AFS061931Soil (2014)USA, New York25/26TH, H, K, CS, gmk, purh, tpi
B.wiedmannii AFS029692Plant, core (2014)USA, North Carolina25/26H, K, CS, gmk, ilvd, pta, purh, pyca2, tpi
B.cereus AFS034338Plant, Core Other Plant (2014)USA, North Carolina25/26H, K, CS, gmk, ilvd, pta, purh, pyca2, tpi
B.wiedmannii AFS020690Food, Mushroom (2013)USA, Iowa25/26TH, H, K, CS, gmk, ilvd, purh
B.wiedmannii AFS029396Plant, Corn core (2014)USA, Illinois25/26TH, H, CS, P, gyrb, mbl, mdh, muts, rpob
B.wiedmannii AFS018713Plant, Corn (2014)USA, Iowa25/26TH, H, CS, P, mbl, mdh, muts, pyca1, rpob
B.wiedmannii AFS063010(2014)USA, North Carolina24/26H, K, CS, glpf, ilvd, purh, pyca2, tpi
B.wiedmannii AFS080672Soil (2014)USA, New York24/26H, K, clpc, gdpd, gmk, ilvd, panc, pta, purf, purh, pyca2, tpi, yhfl
B.wiedmannii AFS078322Soil (2014)USA, New York24/26TH, H, P, clpc, dinb, gdpd, gyrb, mdh, muts, purf, pyca1, rpob
B.wiedmannii AFS045501Soil (2014)USA, New York24/26TH, H, K, P, clpc, purf, yhfl
B.wiedmannii AFS048126Plant, Corn root (2014)USA, Iowa24/26H, K, CS, glpf, gmk, ilvd, pyca2, tpi
B.wiedmannii AFS006440Plant, Soybean core (2014)USA, Iowa24/26H, P, clpc, dinb, gdpd, gyrb, mdh, muts, purf, pyca1, rpob, yhfl
B.wiedmannii AFS045844Plant, core (2014)USA, North Carolina24/26TH, H, CS, gmk, gyrb, mbl, mdh, purh, pyca1, rpob, tpi
B.wiedmannii AFS002659Soil (2014)USA, New York23/26K, CS, adk, ccpa, ftsa, glpf, gmk, ilvd, pta, purh, pyca2, recf, succ
B.wiedmannii AFS017127Plant, core (2014)USA, North Carolina23/26TH, H, CS, gmk, gyrb, mbl, mdh, muts, rpob, tpi
B.wiedmannii AFS009197Soil (2014)USA, New York22/26TH, H, K, clpc, dinb, gmk, ilvd, purh
B.wiedmannii AFS010157Plant, Corn core (2014)USA, Illinois21/26TH, K, dinb, ftsa, gmk, purf, purh, recf, tpi, yhfl
B.wiedmannii AFS077115Soil (2014)USA, New York19/26H, clpc, gmk, gyrb, ilvd, mdh, muts, panc, pta, pyca1, rpob, tpi, yhfl
B.wiedmannii AFS066156Plant, core (2014)USA, North Carolina19/26H, clpc, dinb, gmk, gyrb, mbl, mdh, muts, panc, pta, purh, pyca1, pyca2
B.thuringiensis IBL3720Soil (2009)USA, Maryland7/7P


2 isolate(s) sharing MLST alleles in supercluster 62

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.thuringiensis Bt183 Brazil7/7P
B.thuringiensis LFB858Food, black pepper (1994)Brazil7/7P


2 isolate(s) sharing MLST alleles in supercluster 63

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.c_group KW25[Children-s Hospital Oakland Research Institute (CHORI)]USA, California7/7P
B.thuringiensis T24001 Mexico7/7P


6 isolate(s) sharing MLST alleles in supercluster 64

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus BC_19Food, egg product (2006)Italy (Southern)7/7P
B.cereus BC_2Food, egg product (2006)Italy (Southern)7/7P
B.cereus BC_6Food, egg product (2006)Italy (Southern)7/7P
B.cereus BC_16Food, egg product (2006)Italy (Southern)7/7P
B.cereus BC_23Food, egg product (2006)Italy (Southern)7/7P
B.cereus BC_15Food, egg product (2006)Italy (Southern)7/7P


5 isolate(s) sharing MLST alleles in supercluster 65

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus AFS024404Soil (2014)USA, New York26/26TH, H, K, CS, P
B.cereus AFS026312Soil (2014)USA, New York26/26TH, H, K, CS, P
B.cereus AFS034468Soil (2014)USA, New York25/26H, K, CS, gmk, ilvd, pta, purh, pyca2, tpi
B.cereus AFS080704Plant, core (2014)USA, North Carolina24/26H, K, CS, gmk, pta, purh, pyca2, tpi
B.cereus AFS014678Soil (2014)USA, New York24/26TH, H, CS, gyrb, ilvd, mdh, muts, purh, pyca1, rpob, tpi


4 isolate(s) sharing MLST alleles in supercluster 66

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.c_group B4o6Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.cereus S6621Soil (2007)USA, Maryland, Rockville7/7P
B.c_group A4o6Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P
B.c_group B4o1Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)UK, England, Berkshire7/7P


6 isolate(s) sharing MLST alleles in supercluster 67

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus NVH0597/99Food, spice mix (1999) [strain believed to be the cause of a diarrheal food poisoning outbreak]Norway26/26TH, H, K, CS, P
B.cereus MOD1Bc122Food, Paprika (2015)USA, Maryland26/26TH, H, K, CS, P
B.anthracis RIT375Plant, Insulin plant/Spiral flag (Costus igneus) Internal Stem Tissue (2015)Puerto Rico24/26TH, CS, P, ftsa, gyrb, mdh, muts, pyca1, pyre, rpob, succ
B.cereus B5780Human, blood (1970)USA, Texas7/7P
B.cereus 191560.KHuman, calf tissue (2003) [human wound infection following insect bite]UK, Scotland, Glasgow7/7P
B.cereus B06_020Human, woundFrance7/7TH


4 isolate(s) sharing MLST alleles in supercluster 68

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.toyonensis AFS045425Plant, Soybean leaf (2014)USA, Missouri26/26TH, H, K, CS, P
B.toyonensis AFS061268Plant, Soybean leaf (2014)USA, Minnesota26/26TH, H, K, CS, P
B.toyonensis AFS044782Plant, Soybean leaf (2014)USA, Iowa23/26H, CS, glpf, gmk, gyrb, ilvd, mdh, muts, purh, pyca1, pyca2, tpi
B.toyonensis AFS096303Plant, Soybean leaf (2014)USA, Minnesota21/26H, clpc, dinb, glpf, gmk, gyrb, ilvd, mdh, muts, panc, purh, pyca1, pyca2, rpob, yhfl


2 isolate(s) sharing MLST alleles in supercluster 69

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus AFS046754Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS079194Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P


2 isolate(s) sharing MLST alleles in supercluster 70

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus B06_025Human, bloodGuyane7/7TH
B.cereus B06_031HumanMartinique7/7TH


3 isolate(s) sharing MLST alleles in supercluster 71

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus 1Y58Dairy products, milk products (2016)China, Shaanxi Province7/7P
B.cereus 1Y55Dairy products, milk products (2016)China, Shaanxi Province7/7P
B.cereus 5L45Dairy products, milk products (2016)China, Shaanxi Province7/7P


12 isolate(s) sharing MLST alleles in supercluster 72

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus Rock3-28SoilUSA, Maryland, Rockville23/25K, P, adk, ccpa, clpc, dinb, ftsa, gdpd, panc, pyre, succ, yhfl
B.toyonensis BacAerHuman, biopsy of an epithelial lesionBrazil, Rio de Janeiro23/26K, P, adk, ccpa, clpc, dinb, ftsa, gdpd, panc, pyre, succ, yhfl
B.cereus S6623Soil (2007)USA, Maryland, Rockville7/7P
B.cereus BFDA96174(2007)Taiwan, Hsinchu city7/7P
B.cereus S6618Soil (2007)USA, Maryland, Rockville7/7P
B.cereus S6620Soil (2007)USA, Maryland, Rockville7/7P
B.cereus S6563Soil (2007)USA, Maryland, Rockville7/7P
B.cereus S6563aSoil (2007)USA, Maryland, Rockville7/7P
B.cereus S6576Soil (2007)USA, Maryland, Rockville7/7P
B.cereus S6645Soil (2007)USA, Maryland, Rockville7/7P
B.cereus CCBH7517(2011)Brazil, Rio de Janeiro7/7P
B.cereus S6603Soil (2007)USA, Maryland, Rockville7/7P


7 isolate(s) sharing MLST alleles in supercluster 73

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus AFS067272Plant, Weed plant (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS077416Plant, Weed plant (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS016912Plant, core (2014)USA, North Carolina24/26TH, H, CS, P, gyrb, mdh, pyca1, rpob
B.cereus AFS068308Plant, tree leaf (2014)USA, North Carolina23/26TH, H, K, clpc, dinb, gdpd, gmk, ilvd, purf
B.cereus AFS030055Plant, tree leaf (2014)USA, North Carolina22/26CS, P, adk, ftsa, glpt, gyrb, pyca1, pyre, recf, rpob, succ
B.cereus AFS074395Plant, tree leaf (2014)USA, North Carolina21/26H, clpc, gdpd, gmk, gyrb, ilvd, mdh, muts, panc, purf, purh, pyca1, pyca2, rpob, tpi
B.cereus Rock3-44SoilUSA, Maryland, Rockville18/25TH, clpc, gdpd, gmk, gyrb, purf, purh, pyca1, recf, rpob, succ, tpi


2 isolate(s) sharing MLST alleles in supercluster 74

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.thuringiensis Bt152 Brazil7/7P
B.thuringiensis LFB563SoilBrazil7/7P


2 isolate(s) sharing MLST alleles in supercluster 75

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus BFDA96167Food, rice (2007)Taiwan, Taipei county7/7P
B.cereus BFDA96161Food, rice (2007)Taiwan, Taipei county7/7P


2 isolate(s) sharing MLST alleles in supercluster 76

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.thuringiensis HBF-18Soil (2003)China, Hebei, Baoding26/26TH, H, K, CS, P
B.thuringiensis Fcd114Soil (2003)China, Hebei, Baoding26/26TH, H, K, CS, P


2 isolate(s) sharing MLST alleles in supercluster 77

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus AFS010695Soil (2014)USA, North Carolina19/26TH, ftsa, gdpd, gmk, gyrb, muts, purf, purh, pyca1, pyre, rpob, succ, tpi
B.c_group BAG2X1-3SoilUSA, Massachusetts, Boston19/26TH, ftsa, gdpd, gmk, gyrb, muts, purf, purh, pyca1, pyre, rpob, succ, tpi


48 isolate(s) sharing MLST alleles in supercluster 78

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus AFS025909Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS003338Plant, Corn (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS031264Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS004748Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS077972Plant, Soybean root (2013)USA, Minnesota26/26TH, H, K, CS, P
B.cereus AFS025485Plant, Corn (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS007868Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS086892Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS037584Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.cereus AFS040984Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.cereus AFS020233Plant, Corn root (2014)USA, Illinois26/26TH, H, K, CS, P
B.cereus AFS032151Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS014847Plant, Corn (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS000144Plant, Corn (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS028514Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.cereus AFS063866Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS074370Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS028516Plant, Corn leaf (2014)USA, Illinois26/26TH, H, K, CS, P
B.cereus AFS027898Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS011202Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS094413Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS026439Plant, Soybean root (2014)USA, Missouri26/26TH, H, K, CS, P
B.cereus AFS023425Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS047135Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS051030(2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS009443Plant, Corn core (2014)USA, Illinois26/26TH, H, K, CS, P
B.cereus AFS082524Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS050653Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS008423Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS095084Plant, Soybean root (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS036159Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS060621Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS024540Soil (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS006340Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS079942Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS000175Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS017700Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS024847Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS048756Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS007234Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS046388Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS091626Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS019247Plant, Corn (2014)USA, Iowa25/26TH, H, K, P, clpc, gdpd, purf, yhfl
B.cereus AFS074868Plant, Corn leaf (2014)USA, Iowa25/26TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.cereus AFS065445Plant, Corn core (2014)USA, North Carolina19/26CS, adk, ccpa, ftsa, glpt, gyrb, mdh, muts, pta, purh, pyca1, pyca2, pyre, recf
B.cereus 163770.KHuman, wound infection (2005)UK, Scotland7/7P
B.cereus F5157Food (1983) [diarrheal food poisoning]USA, California7/7P
B.cereus ATCC6464Soil 6/6CS


10 isolate(s) sharing MLST alleles in supercluster 79

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus AFS041242Soil (2014)USA, New York26/26TH, H, K, CS, P
B.c_group BAG2O-3SoilUSA, Massachusetts, Boston26/26TH, H, K, CS, P
B.c_group B5-2SoilChina26/26TH, H, K, CS, P
B.cereus AFS047977Plant, core (2014)USA, North Carolina26/26TH, H, K, CS, P
B.cereus AFS077649Soil (2014)USA, New York26/26TH, H, K, CS, P
B.cereus AFS069564Plant, Corn root (2013)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS086766(2014)USA, North Carolina25/26TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.cereus AFS038165Soil (2014)USA, New York25/26K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus AFS040108Plant, Oats plant (2014)USA, North Carolina24/26TH, H, CS, P, mdh, muts, pyca1, rpob
B.cereus AFS009781Soil (2014)USA, New York23/26H, CS, glpf, gmk, gyrb, ilvd, muts, purh, pyca1, pyca2, rpob, tpi


3 isolate(s) sharing MLST alleles in supercluster 80

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus BC_20Food, egg product (2006)Italy (Southern)7/7P
B.cereus BC_22Food, egg product (2006)Italy (Southern)7/7P
B.cereus BC_13Food, egg product (2006)Italy (Southern)7/7P


3 isolate(s) sharing MLST alleles in supercluster 81

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus 644-715-5Human, blood (2003) [human pyrexia]Japan7/7P
B.cereus BCT1 Japan7/7P
B.cereus BCT2 Japan7/7P


2 isolate(s) sharing MLST alleles in supercluster 82

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.thuringiensis K15_252(2015)Korea (South)7/7P
B.cereus F2404B/79(1979) [diarrheal food poisoning outbreak] 7/26P


3 isolate(s) sharing MLST alleles in supercluster 83

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus 58R4Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. hereward grown in a plot in which the previous crop was wheat (Triticum aestivum) var. cadenza]UK, England, Rothamsted7/7P
B.c_group D10-6.A.iSoil (2006)UK7/7P
B.cereus 58R2Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. hereward grown in a plot in which the previous crop was wheat (Triticum aestivum) var. cadenza]UK, England, Rothamsted7/7P


7 isolate(s) sharing MLST alleles in supercluster 84

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.thuringiensis BGSC4Y1Other, soil or litter of silkworm (Bombyx mori)Japan26/26TH, H, K, CS, P
B.cereus 6113Human, vomit (2016)China26/26TH, H, K, CS, P
B.thuringiensis XL6Soil (2006)China, Inner Mongolia26/26TH, H, K, CS, P
B.cereus AR156Soil, garden soil (2008)China23/26K, CS, P, ccpa, ftsa, pyre, recf
B.cereus MOD1Bc81Food, Whole Black Pepper (2015)USA, Maryland18/26P, adk, ccpa, clpc, dinb, ftsa, gdpd, pyca1, pyre, recf, succ, yhfl
B.thuringiensis KB1Plant, thale cress (Arabidopsis thaliana) apoplast (2012)Korea (South), Daejeon17/26K, clpc, dinb, ftsa, glpf, ilvd, panc, pta, purf, purh, pyre, tpi
B.cereus BFDA96164Food, rice (2007)Taiwan, Taipei county7/7P


8 isolate(s) sharing MLST alleles in supercluster 85

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.thuringiensis BGSC4AC1Soil (1988)Mexico26/26TH, H, K, CS, P
B.thuringiensis BGSC4AJ1[produces a polyglutamate capsule resembling that of B.anthracis; two complete genomes sequenced for this strain with identical MLST sequences]Mexico26/26TH, H, K, CS, P
B.c_group AH820Human, periodontitis (1995)Norway, Akershus23/26TH, H, P, clpc, dinb, gdpd, gyrb, mdh, purf, pyca1, rpob
B.c_group AH818Human, periodontitis (1995)Brazil, Curitiba11/11TH, H
B.c_group AH816Human, periodontitis (1995)Norway, Akershus11/11TH, H
B.c_group AH813Human, periodontitis (1995)Brazil, Curitiba11/11TH, H
B.cereus S6598Soil (2007)USA, Maryland, Rockville7/7P
B.cereus BFDA96119Food (2007)Taiwan, Yilan county7/7P


18 isolate(s) sharing MLST alleles in supercluster 86

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.cereus AFS016726Soil (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS022238Food, Mushroom (2013)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS010456Soil (2014)USA, New York26/26TH, H, K, CS, P
B.cereus AFS022362Soil (2014)USA, New York26/26TH, H, K, CS, P
B.cereus AFS054043Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS000393Plant, Corn root (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS071406Soil (2014)USA, New York26/26TH, H, K, CS, P
B.cereus AFS048418Soil (2014)USA, New York26/26TH, H, K, CS, P
B.cereus AFS050681Soil (2014)USA, Iowa26/26TH, H, K, CS, P
B.cereus AFS091954Soil (2014)USA, New York25/26TH, K, CS, P, pyre, recf, succ
B.cereus AFS039926Soil (2014)USA, New York25/26TH, H, CS, P, gyrb, mbl, mdh, muts, rpob
B.cereus AFS017202Plant, Corn root (2014)USA, Iowa25/26TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.cereus AFS086955Soil (2014)USA, New York25/26TH, H, K, CS, gmk, ilvd, purh
B.cereus AFS070292Soil (2014)USA, New York25/26H, K, CS, glpf, gmk, ilvd, purh, pyca2, tpi
B.c_group BAG3X2-1SoilUSA, Massachusetts, Boston25/26TH, H, K, P, clpc, dinb, gdpd, purf
B.cereus AFS085854Soil (2014)USA, New York23/26H, CS, glpf, gmk, gyrb, ilvd, mdh, muts, purh, pyca2, rpob, tpi
B.cereus AFS055677Soil (2014)USA, Iowa23/26H, CS, glpf, gmk, gyrb, ilvd, mdh, muts, purh, pyca2, rpob, tpi
B.cereus AFS026918Soil (2014)USA, New York20/26CS, ccpa, ftsa, glpf, gmk, gyrb, ilvd, mdh, muts, pyca2, pyre, recf, rpob, succ, tpi


23 isolate(s) sharing MLST alleles in supercluster 87

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.toyonensis AFS047230Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS069354Plant, Soybean core (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS033534Plant, Soybean leaf (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS020202Plant, Weed plant (2014)USA, North Carolina26/26TH, H, K, CS, P
B.toyonensis AFS072674Plant, Soybean leaf (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS011667Soil (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS074602Plant, Soybean leaf (2014)USA, Iowa26/26TH, H, K, CS, P
B.toyonensis AFS000753Plant, Soybean leaf (2014)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS075176Plant, Corn leaf (2014)USA, Illinois26/26TH, H, K, CS, P
B.toyonensis AFS070352Plant, Soybean leaf (2014)USA, Iowa25/26TH, H, K, P, clpc, dinb, gdpd, purf
B.toyonensis AFS061925Plant, Corn root (2014)USA, Iowa25/26TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.toyonensis AFS032951Soil (2014)USA, Iowa25/26H, K, CS, glpf, gmk, ilvd, purh, pyca2, tpi
B.toyonensis AFS072125Plant, Soybean leaf (2014)USA, Iowa25/26TH, K, CS, P, ftsa, pyre, succ
B.toyonensis AFS005430Plant, soybean seed (2014)USA, Iowa24/26K, CS, P, adk, ftsa, glpt, recf, succ
B.toyonensis AFS038153Plant, core (2014)USA, North Carolina24/26TH, H, P, clpc, gdpd, mbl, mdh, muts, purf, pyca1, rpob, yhfl
B.toyonensis AFS076931Soil (2014)USA, Iowa23/26H, CS, gmk, gyrb, ilvd, mdh, muts, pta, purh, pyca2, rpob, tpi
B.toyonensis AFS077622Plant, Soybean core (2014)USA, Iowa23/26TH, P, clpc, ftsa, gdpd, gyrb, mdh, muts, purf, pyca1, recf, rpob, succ, yhfl
B.toyonensis AFS021654Plant, Soybean core (2014)USA, Iowa23/26H, CS, gmk, gyrb, ilvd, mdh, muts, pta, purh, pyca1, rpob, tpi
B.toyonensis AFS089278Plant, core (2014)USA, North Carolina22/26H, K, P, gdpd, purf
B.toyonensis AFS054461Soil (2014)USA, Iowa22/26P, adk, ccpa, clpc, ftsa, gdpd, gyrb, mdh, muts, panc, purf, pyca1, recf, rpob, succ, yhfl
B.toyonensis AFS010752Plant, core (2014)USA, North Carolina21/26CS, adk, ccpa, ftsa, glpt, gmk, gyrb, ilvd, mdh, muts, pta, purh, pyca1, pyre, rpob, succ
B.cereus S6597Soil (2007)USA, Maryland, Rockville7/7P
B.thuringiensis PLJAS42/3Soil (2012)Poland7/7P


3 isolate(s) sharing MLST alleles in supercluster 88

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StrainSourceLocationShared / Total LociShared Scheme(s) and/or Loci
B.thuringiensis BGSC4M3#1(1968) [two complete genomes sequenced for this strain with different MLST sequences and origins; strain sequenced by State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, Hubei, China; sequen