Bacillus cereus group Multi-Scheme MLST Superclusters

The isolates were combined into 350 distinct groups (superclusters), which are detailed below. The superclusters include a total of 3386 isolates.
There are also 1242 singletons, i.e., isolates that do not share a typing profile with any other isolate (i.e., isolates that have unique genotypes). They are listed here.

The superclusters contain isolates sharing identical sequences and are shown in the tables below. The number and list of shared MLST schemes and/or alleles are also given. In a given supercluster, every isolate in the table shares the listed loci with at least one other strain in the group. Press the "Show Network" button to display a network showing what data are shared among which strains (if the group contains 3 isolates or more). Click on the strain name to get full information and links to allele sequences for a given isolate.
MLST schemes are abbreviated as follows: TH, Tourasse−Helgason; H, Helgason; K, Ko; P, Priest; CS, Candelon−Sorokin.

In addition, you may press the "Show in Supertree" button to mark the isolates of a supercluster in red in the MLST supertree using the Java Archaeopteryx tree viewer. Press the "Extract Subtree" button to display the subtree containing only the isolates of the supercluster (if the group contains 3 isolates or more). The branches of the tree will be colored according to the major phylogenetic clusters of the B. cereus group population, with the following keys:

clusterI,

clusterII,

clusterIII,

clusterIV,

clusterV,

clusterVI,

clusterVII,

unclustered.

The trees and subtrees can be saved either in color in PhyloXML format with the associated Archaeopteryx configuration file for viewing with Archaeopteryx (you will need an utility such as "zip/unzip" on Unix/Mac or "WinZip" on Windows to open the files), or in standard (uncolored) Newick/NewHampshire format.

145 isolate(s) sharing MLST alleles in supercluster 1

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis AFS058113	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.c_group BAG1O-3	Soil	USA, Massachusetts, Boston	26/26	TH, H, K, CS, P
B.thuringiensis AFS059526	Plant, Corn grainbin dust (2013)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS040286	Plant, Corn seed (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS065707	Soil (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.c_group BAG1X1-2	Soil	USA, Massachusetts, Boston	26/26	TH, H, K, CS, P
B.thuringiensis AFS027178	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS029963	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS016919	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4AG1	Other, grain silo	France	26/26	TH, H, K, CS, P
B.thuringiensis AFS052460	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus MLY1	Other, activated sludge (2008)	China, Shaoxing	26/26	TH, H, K, CS, P
B.thuringiensis AFS043063	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis AFS059517	Plant, Corn grainbin dust (2013)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS036350	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis AFS002920	Plant, Soybean seed (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS053744	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.thuringiensis AFS059914	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis AFS023418	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.c_group HuB1-1	Soil	Belgium	26/26	TH, H, K, CS, P
B.thuringiensis AFS052778	Soil (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS059242	Other, excrement (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS029475	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis AFS031631	Plant, Corn root (2013)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis AFS059931	Soil (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS016894	Soil (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS020128	Plant, Soybean root (2013)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis AFS097488	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis AFS055854	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS045572	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS071638	Plant, Soybean root (2013)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis AFS061653	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS043555	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS009253	Plant, tree leaf (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS090477	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis AFS063894	Food, Mushroom (2013)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS002866	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis AFS006689	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4AD1	Soil	USSR, Russia	26/26	TH, H, K, CS, P
B.thuringiensis AFS011673	Plant, Soybean root (2013)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis AFS048789	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS094940	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis AFS054343	Plant, Corn root (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis AFS095788	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis AFS071454	Plant, Soybean root (2014)	USA, Missouri	26/26	TH, H, K, CS, P
B.thuringiensis AFS066710	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS009644	Plant, tree leaf (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS056615	Plant, Soybean leaf (2014)	USA, Missouri	26/26	TH, H, K, CS, P
B.thuringiensis AFS067634	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS048014	Plant, Soybean leaf (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS076597	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS055282	Plant, Corn leaf (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS061177	Plant, Soybean leaf (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis AFS015432	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS005083	Plant, leaf (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS066836	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS047635	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.cereus ATCC53522	Plant, roots of field-grown alfalfa/Lucerne grass (Medicago sativa) (1985)	USA, Wisconsin, Arlington	26/26	TH, H, K, CS, P
B.thuringiensis AFS075082	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS083288	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS078332	Plant, Weed plant (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS014334	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS020608	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS048765	Plant, Soybean root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS045516	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS039999	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS096978	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis AFS067605	Food, Mushroom (2013)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS049152	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS026252	Plant, Corn (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS061455	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis AFS022658	Plant, Soybean leaf (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis AFS076260	Plant, Corn grainbin dust (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS030179	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS055002	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis AFS009218	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS018179	Plant, Corn grainbin dust (2013)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS014145	Plant, Soybean root (2013)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis AFS097856	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis AFS026926	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS011084	Plant, Soybean root (2014)	USA, Missouri	26/26	TH, H, K, CS, P
B.thuringiensis AFS024615	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS079576	Plant, core (2014)	USA, North Carolina	25/26	TH, H, CS, P, gyrb, mbl, muts, pyca1, rpob
B.thuringiensis AFS011939	Plant, Soybean root (2014)	USA, Iowa	25/26	H, K, P, clpc, dinb, gdpd, purf, yhfl
B.thuringiensis AFS087171	Plant, core (2014)	USA, North Carolina	25/26	H, K, CS, glpf, gmk, ilvd, purh, pyca2, tpi
B.thuringiensis AFS031651	Animal, Insect, beetle (2013)	USA, North Carolina	25/26	TH, H, CS, P, gyrb, mbl, muts, pyca1, rpob
B.thuringiensis AFS023506	Plant, Soybean core (2014)	USA, Iowa	25/26	TH, K, CS, P, ftsa, pyre, succ
B.thuringiensis AFS092108	Plant, Soybean core (2014)	USA, Iowa	25/26	TH, H, K, P, dinb, gdpd, purf, yhfl
B.thuringiensis AFS005023	(2014)	USA, North Carolina	25/26	TH, H, K, P, dinb, gdpd, purf, yhfl
B.thuringiensis AFS094329	Plant, core (2014)	USA, North Carolina	25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.thuringiensis AFS045814	(2014)	USA, North Carolina	25/26	TH, H, CS, P, mbl, mdh, muts, pyca1, rpob
B.thuringiensis AFS065753	Animal, earthworm (2013)	USA, Minnesota	25/26	K, CS, P, ccpa, ftsa, glpt, pyre, recf, succ
B.thuringiensis AFS021667	Plant, Corn core (2014)	USA, Illinois	25/26	TH, H, CS, P, gyrb, mbl, mdh, pyca1, rpob
B.thuringiensis AFS009835	Soil (2014)	USA, New York	25/26	TH, H, K, P, clpc, dinb, purf, yhfl
B.thuringiensis AFS040001	Plant, Corn root (2014)	USA, Iowa	25/26	K, CS, P, adk, ftsa, glpt, pyre, recf, succ
B.thuringiensis AFS025854	Plant, Soybean core (2014)	USA, Iowa	25/26	TH, K, CS, P, ftsa, recf, succ
B.thuringiensis AFS071939	Plant, Weed core (2014)	USA, North Carolina	25/26	TH, H, K, P, clpc, dinb, gdpd, purf
B.thuringiensis AFS041586	Plant, Grass core (2014)	USA, Iowa	25/26	TH, H, K, P, clpc, gdpd, purf, yhfl
B.thuringiensis AFS059559	Soil (2014)	USA, North Carolina	25/26	TH, H, K, P, clpc, dinb, gdpd, yhfl
B.thuringiensis AFS063640	Plant, Corn core (2014)	USA, Illinois	24/26	TH, H, P, clpc, dinb, gyrb, mbl, mdh, purf, pyca1, rpob, yhfl
B.thuringiensis AFS034126	Plant, Corn core (2014)	USA, Illinois	24/26	TH, H, CS, gmk, gyrb, ilvd, mbl, mdh, muts, purh, rpob
B.thuringiensis AFS012232	Plant, Weed plant (2014)	USA, Indiana	24/26	TH, H, K, P, dinb, gdpd, purf
B.thuringiensis AFS023641	Plant, core (2014)	USA, North Carolina	24/26	H, K, clpc, dinb, gmk, ilvd, panc, pta, purf, purh, pyca2, tpi, yhfl
B.thuringiensis AFS082639	Plant, core (2014)	USA, North Carolina	24/26	TH, H, K, P, dinb, gdpd, yhfl
B.thuringiensis AFS003097	(2014)	USA, North Carolina	24/26	TH, H, K, P, clpc, dinb, gdpd
B.thuringiensis AFS019545	Plant, core (2014)	USA, North Carolina	24/26	TH, H, CS, P, gyrb, mbl, pyca1, rpob
B.thuringiensis AFS054835	Plant, Corn leaf (2014)	USA, Iowa	24/26	TH, H, CS, gyrb, ilvd, mbl, mdh, purh, pyca1, rpob, tpi
B.thuringiensis B-2012	Other, Sediments (2002)	Pacific Ocean	23/26	CS, P, adk, ccpa, ftsa, gyrb, mbl, mdh, muts, pyre, recf, rpob
B.thuringiensis AFS089732	Plant, Corn core (2014)	USA, Illinois	23/26	TH, P, dinb, ftsa, gdpd, gyrb, mbl, mdh, purf, pyca1, recf, rpob, succ, yhfl
B.thuringiensis AFS005011	Plant, Weed plant (2014)	USA, Indiana	23/26	H, CS, glpf, gmk, gyrb, ilvd, mbl, muts, purh, pyca1, pyca2, rpob
B.cereus MOD1Bc83	Food, Whole Black Pepper (2015)	USA, Maryland	23/26	TH, H, P, clpc, dinb, gyrb, mdh, muts, purf, pyca1, rpob
B.thuringiensis AFS029767	Plant, Soybean leaf (2014)	USA, Minnesota	23/26	H, K, clpc, gdpd, glpf, gmk, ilvd, pta, purf, pyca2, tpi, yhfl
B.thuringiensis AFS088507	Soil (2014)	USA, Iowa	23/26	TH, H, P, clpc, dinb, gyrb, mdh, muts, pyca1, rpob, yhfl
B.thuringiensis AFS033597	Soil (2014)	USA, North Carolina	23/26	H, K, clpc, dinb, gdpd, glpf, ilvd, panc, purh, pyca2, tpi, yhfl
B.thuringiensis Bt18247	Animal, nematode (Caenorhabditis elegans)		22/26	TH, P, clpc, dinb, ftsa, gyrb, mdh, muts, purf, pyca1, recf, rpob, succ
B.cereus FSLK6-0043	Dairy products, Laboratory Heat Treated Raw Milk (2012)	USA, New York	22/26	H, clpc, gdpd, glpf, gmk, gyrb, mbl, mdh, panc, purf, purh, pyca1, pyca2, rpob, tpi, yhfl
B.thuringiensis AFS099506	Plant, Corn root (2014)	USA, Iowa	22/26	H, K, clpc, gdpd, glpf, gmk, ilvd, panc, purh, pyca2, tpi
B.thuringiensis AFS096410	Plant, Corn leaf (2014)	USA, Illinois	21/26	CS, ccpa, ftsa, glpf, glpt, gyrb, ilvd, mbl, pta, purh, pyca1, pyca2, recf, rpob, succ, tpi
B.thuringiensis AFS052034	Plant, Soybean leaf (2014)	USA, Minnesota	21/26	K, adk, ccpa, clpc, ftsa, gdpd, glpf, glpt, gmk, ilvd, purf, pyca2, recf, succ, tpi, yhfl
B.thuringiensis AFS084862	Plant, Corn core (2014)	USA, Illinois	20/26	H, clpc, dinb, gdpd, glpf, gmk, gyrb, mbl, mdh, purh, pyca1, pyca2, rpob, tpi
B.thuringiensis AFS056597	Soil (2014)	USA, North Carolina	19/26	H, dinb, glpf, gmk, gyrb, mbl, mdh, pta, purh, pyca1, pyca2, rpob, yhfl
B.thuringiensis AFS027250	Plant, Corn leaf (2014)	USA, Illinois	17/26	K, adk, ccpa, clpc, dinb, ftsa, glpt, ilvd, panc, purh, pyca2, recf
B.c_group KW26	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.cereus HF10	Food (2014)	Germany, Berlin	7/7	P
B.c_group KW3	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.cereus SB460	Human, blood, drug user (2005) [human septicemia]	USA, New York	7/7	P
B.thuringiensis K14_5846	(2014)	Korea (South)	7/7	P
B.cereus Bc_BY_D1-1	Soil (2015)	Belarus, Gomel	7/7	P
B.cereus S6624	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6584	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus HF51	Food (2015)	Germany, Berlin	7/7	P
B.cereus 2004727352	Human, cutaneous lesion (2004) [human wound infection; from an outbreak of cutaneous infection in military cadets; same outbreak as isolates 2004727353 and 2004727354]	USA, Georgia	7/7	P
B.cereus c1617	Animal, mouse faeces/stools	USA, North Carolina	7/7	P
B.c_group MCCC1A00841	Other, sediments (2005)	Pacific Ocean	7/7	P
B.cereus 2004727353	Human, cutaneous lesion (2004) [human wound infection; from an outbreak of cutaneous infection in military cadets; same outbreak as isolates 2004727352 and 2004727354]	USA, Georgia	7/7	P
B.cereus S6590	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus HF54	Food (2015)	Germany, Berlin	7/7	P
B.c_group FSLR5-0184	Dairy products, milk products (2006)	USA	7/7	P
B.cereus S6569	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus LFB1687	Animal, Insect, Culicidae (Mosquitoes) (2008)	Brazil, Sao Paulo	7/7	TH
B.cereus S6636	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.c_group KW7	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.cereus 2004727354	Human, cutaneous lesion (2004) [human wound infection; from an outbreak of cutaneous infection in military cadets; same outbreak as isolates 2004727352 and 2004727353]	USA, Georgia	7/7	P
B.c_group KW1	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.cereus S6595	Soil (2007)	USA, Maryland, Rockville	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 2

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group VDM034	Soil	Spain	24/26	TH, H, P, clpc, gdpd, gyrb, mbl, mdh, purf, pyca1, rpob, yhfl
B.c_group VDM062	Soil	UK, Scotland	24/26	TH, H, P, clpc, gdpd, gyrb, mbl, mdh, purf, pyca1, rpob, yhfl
B.thuringiensis PLmBPN01	Soil (2012)	Poland	7/7	P

288 isolate(s) sharing MLST alleles in supercluster 3

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.toyonensis AFS058160	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS099364	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.c_group BAG4X2-1	Soil	USA, Massachusetts, Boston	26/26	TH, H, K, CS, P
B.c_group HuB2-9	Soil	Belgium	26/26	TH, H, K, CS, P
B.toyonensis AFS050593	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.cereus FSLH8-0488	Other, Water from hose connected to pond (2006)	USA, New York	26/26	TH, H, K, CS, P
B.toyonensis AFS014939	Plant, Grass core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS028444	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS081127	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS091569	Plant, Soybean root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS019346	Plant, Soybean leaf (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS083298	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis ZBG4	Soil (2014)	France, Zellenberg	26/26	TH, H, K, CS, P
B.toyonensis AFS036089	Plant, Soybean root (2014)	USA, Missouri	26/26	TH, H, K, CS, P
B.toyonensis AFS086269	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS027862	Other, excrement (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS033588	Plant, Corn leaf (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS055990	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS081174	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS091045	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.toyonensis AFS089729	Soil (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.toyonensis AFS084980	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.c_group HuB5-5	Soil	Belgium	26/26	TH, H, K, CS, P
B.toyonensis AFS094862	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS006079	Plant, Soybean root (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.toyonensis AFS027629	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS033493	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS089650	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS051123	Plant, Wheat plant (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.toyonensis AFS067067	Plant, Corn (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis BCT-7112	Soil (1966) [active ingredient of the feed additive preparation Toyocerin]	Japan, Shizuoka Prefecture, Izu	26/26	TH, H, K, CS, P
B.toyonensis AFS048987	Plant, Weed leaf (2014)	USA, Ohio	26/26	TH, H, K, CS, P
B.toyonensis AFS031162	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.c_group BAG2O-2	Soil	USA, Massachusetts, Boston	26/26	TH, H, K, CS, P
B.toyonensis AFS080033	Plant, Soybean leaf (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS001450	Plant, Corn (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS089449	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.toyonensis AFS055530	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS001368	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS028541	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS042148	Plant, Corn grainbin dust (2013)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus FSLH8-0482	Soil (2006) [soil in areas adjacent to barns]	USA, New York	26/26	TH, H, K, CS, P
B.toyonensis AFS009314	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS045461	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS026256	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.toyonensis AFS001294	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.cereus IP5832	Other, commercial probiotic		26/26	TH, H, K, CS, P
B.c_group BAG5O-1	Soil	USA, Massachusetts, Boston	26/26	TH, H, K, CS, P
B.cereus 105Ne	Other, Water (2011)	Switzerland, Neuchatel, Ponts-de-Martel	26/26	TH, H, K, CS, P
B.toyonensis AFS065389	Plant, Corn root (2014)	USA, Indiana	26/26	TH, H, K, CS, P
B.toyonensis AFS033477	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.toyonensis AFS072190	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS086995	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.toyonensis AFS035117	Plant, Grass core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS097554	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS095380	(2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS084149	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS051073	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.toyonensis AFS050801	Soil (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.toyonensis AFS093065	Plant, Soybean root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS097065	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus Rock4-18	Soil	USA, Maryland, Rockville	26/26	TH, H, K, CS, P
B.toyonensis AFS060522	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS023984	Plant, Soybean root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS031495	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.toyonensis AFS066620	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS091268	Plant, Corn root (2014)	USA, Ohio	26/26	TH, H, K, CS, P
B.toyonensis AFS054329	Plant, Corn leaf (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS052350	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.c_group VD148	Soil	UK, Scotland	26/26	TH, H, K, CS, P
B.toyonensis AFS052650	Animal, Insect, Japanese beetle (2013)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS040610	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.toyonensis AFS018451	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis GOE7#1	Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)	Germany, Goettingen	26/26	TH, H, K, CS, P
B.toyonensis AFS068057	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.c_group BAG6O-1	Soil	USA, Massachusetts, Boston	26/26	TH, H, K, CS, P
B.toyonensis AFS000445	Plant, Weed plant (2014)	USA, Indiana	26/26	TH, H, K, CS, P
B.toyonensis AFS039823	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.toyonensis AFS095804	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS027027	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis GOE5#1	Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)	Germany, Goettingen	26/26	TH, H, K, CS, P
B.toyonensis AFS064666	Plant, Weed leaf (2014)	USA, Ohio	26/26	TH, H, K, CS, P
B.toyonensis AFS067541	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.toyonensis AFS039264	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.c_group BAG1O-2	Soil	USA, Massachusetts, Boston	26/26	TH, H, K, CS, P
B.cereus NVH141/1/01	(2001) [diarrheal food poisoning outbreak]	Norway	26/26	TH, H, K, CS, P
B.toyonensis AFS086630	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.toyonensis AFS072832	Plant, Soybean root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS045312	Soil (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.toyonensis AFS043269	Plant, Corn leaf (2014)	USA, Ohio	26/26	TH, H, K, CS, P
B.toyonensis AFS055090	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.toyonensis AFS089607	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS097295	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS060293	Other, excrement (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS049517	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS095385	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS072123	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.toyonensis AFS061705	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.c_group HuA2-3	Soil	Belgium	26/26	TH, H, K, CS, P
B.toyonensis AFS023559	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.toyonensis AFS009906	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS074325	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS022121	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS096476	Plant, Soybean root (2013)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS006579	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.toyonensis AFS092321	Plant, tree leaf (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.toyonensis AFS081381	Plant, Soybean root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS017381	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS000087	Soil (2013)	USA, North Carolina	26/26	TH, H, K, CS, P
B.toyonensis AFS059543	Plant, Corn (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS027674	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS067879	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.toyonensis AFS070094	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.toyonensis AFS099561	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.toyonensis AFS055514	Plant, Weed plant (2014)	USA, Indiana	26/26	TH, H, K, CS, P
B.toyonensis AFS041274	Plant, Soybean leaf (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS043516	Plant, Weed leaf (2014)	USA, Indiana	26/26	TH, H, K, CS, P
B.toyonensis AFS045990	Plant, Corn (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS057443	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS098702	Plant, Soybean root (2013)	USA, Minnesota	26/26	TH, H, K, CS, P
B.toyonensis AFS016553	Plant, Weed plant (2014)	USA, Indiana	26/26	TH, H, K, CS, P
B.toyonensis AFS049391	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS004252	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.toyonensis AFS036256	Plant, Soybean root (2014)	USA, Missouri	26/26	TH, H, K, CS, P
B.c_group VD214	Other, Water	UK, Scotland	26/26	TH, H, K, CS, P
B.toyonensis AFS024499	Plant, Wheat plant (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.toyonensis AFS078111	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.toyonensis AFS007279	Plant, Weed plant (2014)	USA, Indiana	26/26	TH, H, K, CS, P
B.toyonensis AFS003709	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus Rock3-29	Soil	USA, Maryland, Rockville	26/26	TH, H, K, CS, P
B.toyonensis AFS099300	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.toyonensis AFS082630	Plant, Soybean leaf (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS051208	Plant, Weed plant (2014)	USA, Indiana	26/26	TH, H, K, CS, P
B.toyonensis AFS075404	Plant, Soybean root (2013)	USA, Minnesota	26/26	TH, H, K, CS, P
B.toyonensis AFS026201	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.toyonensis AFS093377	Plant, Soybean root (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.toyonensis BAC3151	Plant, bean (Phaseolus vulgaris) leaves (2007)	Brazil, Minas Gerais, Coimbra	26/26	TH, H, K, CS, P
B.cereus Rock1-3	Soil	USA, Maryland, Rockville	26/26	TH, H, K, CS, P
B.toyonensis AFS081053	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS083176	Plant, Soybean root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS020717	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS088186	Plant, Soybean root (2013)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS062910	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS084242	Animal, Insect, Japanese beetle (2013)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS058541	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.toyonensis AFS073024	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.toyonensis AFS027646	Plant, Corn leaf (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS013932	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.toyonensis AFS016448	Plant, Weed plant (2014)	USA, Indiana	25/26	TH, H, CS, P, gyrb, mbl, mdh, muts, rpob
B.toyonensis AFS034981	Plant, Corn core (2014)	USA, Illinois	25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.toyonensis AFS017687	Soil (2014)	USA, Iowa	25/26	H, K, CS, glpf, gmk, ilvd, purh, pyca2, tpi
B.toyonensis AFS070247	Plant, Weed leaf (2014)	USA, Indiana	25/26	TH, K, CS, P, ftsa, recf, succ
B.toyonensis AFS070615	Plant, Weed leaf (2014)	USA, Indiana	25/26	TH, K, CS, P, ftsa, pyre, succ
B.toyonensis AFS056055	Plant, Soybean core (2014)	USA, Iowa	25/26	TH, H, K, P, clpc, dinb, purf, yhfl
B.toyonensis AFS002053	Plant, Corn (2014)	USA, Minnesota	25/26	TH, H, CS, P, gyrb, mbl, muts, pyca1, rpob
B.toyonensis AFS026137	Plant, Soybean core (2014)	USA, Iowa	25/26	TH, H, K, CS, gmk, purh, tpi
B.toyonensis AFS068780	Other, excrement (2014)	USA, Iowa	25/26	TH, H, CS, P, mbl, mdh, muts, pyca1, rpob
B.c_group HuB4-10	Soil	Belgium	25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.toyonensis AFS020011	Plant, Grass core (2014)	USA, Iowa	25/26	TH, H, K, CS, gmk, ilvd, purh
B.toyonensis AFS028618	Plant, Corn leaf (2014)	USA, Illinois	25/26	H, K, CS, glpf, gmk, ilvd, purh, pyca2, tpi
B.toyonensis AFS094802	Plant, Soybean core (2014)	USA, Iowa	25/26	K, CS, P, adk, ftsa, glpt, pyre, recf, succ
B.toyonensis AFS042818	(2014)	USA, North Carolina	25/26	TH, H, CS, P, gyrb, mbl, mdh, muts, rpob
B.toyonensis AFS041177	Plant, Weed leaf (2014)	USA, Ohio	25/26	TH, K, CS, P, ftsa, recf, succ
B.toyonensis AFS014496	Soil (2014)	USA, North Carolina	25/26	TH, H, K, P, clpc, dinb, purf, yhfl
B.toyonensis AFS089688	Plant, Grass core (2014)	USA, Iowa	25/26	K, CS, P, adk, ftsa, glpt, pyre, recf, succ
B.toyonensis AFS062328	Plant, Soybean leaf (2014)	USA, Minnesota	25/26	TH, H, K, CS, gmk, ilvd, purh
B.toyonensis AFS027958	Plant, Grass core (2014)	USA, Iowa	25/26	TH, H, K, CS, gmk, ilvd, purh
B.toyonensis AFS017221	Plant, Soybean core (2014)	USA, Iowa	25/26	H, K, P, clpc, dinb, gdpd, purf, yhfl
B.toyonensis AFS083349	Soil (2014)	USA, North Carolina	25/26	TH, H, K, P, dinb, gdpd, purf, yhfl
B.toyonensis AFS064582	Plant, Soybean leaf (2014)	USA, Minnesota	24/26	H, CS, glpf, gmk, gyrb, ilvd, mdh, muts, purh, pyca1, pyca2, rpob, tpi
B.toyonensis AFS009420	Plant, Soybean leaf (2014)	USA, Minnesota	24/26	K, CS, P, ccpa, ftsa, pyre, recf, succ
B.toyonensis AFS028249	Plant, Soybean core (2014)	USA, Iowa	24/26	H, P, clpc, dinb, gdpd, gyrb, mdh, muts, purf, pyca1, rpob, yhfl
B.toyonensis AFS003846	Soil (2014)	USA, Iowa	24/26	TH, H, CS, P, gyrb, mdh, muts, rpob
B.c_group VD131	Soil	Martinique	24/26	TH, H, K, P, dinb, gdpd, purf
B.toyonensis AFS065951	Plant, Corn core (2014)	USA, Illinois	24/26	TH, H, CS, P, mdh, muts, pyca1, rpob
B.toyonensis SJ-S4	Human	USA, Tennessee, Memphis	23/26	TH, P, clpc, dinb, gdpd, gyrb, mdh, muts, pyca1, pyre, recf, rpob, succ, yhfl
B.toyonensis AFS083448	Plant, Soybean leaf (2014)	USA, Minnesota	23/26	H, K, clpc, dinb, gdpd, glpf, gmk, ilvd, pta, purf, purh, pyca2
B.toyonensis AFS082731	Plant, Weed plant (2014)	USA, Indiana	22/26	CS, adk, ccpa, ftsa, glpf, glpt, gmk, gyrb, ilvd, mbl, mdh, muts, purh, pyca2, pyre, rpob, succ
B.toyonensis AFS090953	(2014)	USA, North Carolina	22/26	P, adk, ccpa, dinb, ftsa, gdpd, gyrb, mdh, muts, panc, purf, pyca1, pyre, recf, succ, yhfl
B.toyonensis VU-DES13	Animal, Springtail/Collembola (Folsomia candida) midgut	Netherlands, Amsterdam	21/26	TH, CS, ftsa, gyrb, ilvd, muts, purh, pyca1, pyre, succ, tpi
B.toyonensis AFS044634	Plant, Soybean root (2013)	USA, Missouri	19/26	H, clpc, dinb, glpf, gmk, gyrb, mbl, purf, purh, pyca1, pyca2, rpob, tpi
B.toyonensis AFS021349	Plant, Corn core (2013)	USA, Illinois	16/26	K, clpc, dinb, ftsa, glpf, glpt, gmk, purf, pyca2, pyre, tpi
B.c_group AH1247	Soil (1997) [from the site of an anthrax outbreak]	France, Pyrenees mountains	11/11	TH, H
B.cereus S6607	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.c_group B4s1	Soil (2002)	UK, England, Berkshire	7/7	P
B.c_group C3g3	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group B4m4	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group A3s11	Soil (2002)	UK, England, Berkshire	7/7	P
B.c_group AH1312	Human, blood	Germany, Karlsruhe	7/7	TH
B.c_group AH1311	Other, probiotic	Germany, Karlsruhe	7/7	TH
B.c_group AR10-1	Soil (2012)	Argentina	7/7	P
B.c_group C3s1	Soil (2002)	UK, England, Berkshire	7/7	P
B.c_group C3s10	Soil (2002)	UK, England, Berkshire	7/7	P
B.c_group C3m2	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.cereus S6641	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.c_group PL9	Soil		7/7	P
B.c_group AR13-1	Soil (2012)	Argentina	7/7	P
B.c_group E2s8	Soil (2002)	UK, England, Berkshire	7/7	P
B.cereus NC390	Human, faeces/stools (1982)	Japan	7/7	P
B.c_group A4s9	Soil (2002)	UK, England, Berkshire	7/7	P
B.cereus S6571	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6606	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.c_group B4o11	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group C3s8	Soil (2002)	UK, England, Berkshire	7/7	P
B.c_group B4g1	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group A3s7	Soil (2002)	UK, England, Berkshire	7/7	P
B.cereus S6559	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.c_group A4s10	Soil (2002)	UK, England, Berkshire	7/7	P
B.cereus B06_023	Human, wound	France	7/7	TH
B.c_group A3s6	Soil (2002)	UK, England, Berkshire	7/7	P
B.cereus S6635	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.c_group A3s9	Soil (2002)	UK, England, Berkshire	7/7	P
B.c_group B4g7	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group C3i6	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.cereus S6585	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.c_group C3o5	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group C3o40	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.cereus S6604	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus LB_063	Soil (2006)	USA, Maryland	7/7	P
B.c_group E5i3	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group C3s6	Soil (2002)	UK, England, Berkshire	7/7	P
B.cereus BGSC6A8	Other, used in commercial probiotic BACTISUBTIL		7/7	P
B.cereus BFDA96173	(2007)	Taiwan, Hsinchu city	7/7	P
B.cereus 2004721594	Other, hair clippers (2004)	USA, Georgia	7/7	P
B.c_group E2o8	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group B4g10	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group A4s2	Soil (2002)	UK, England, Berkshire	7/7	P
B.c_group B4s3	Soil (2002)	UK, England, Berkshire	7/7	P
B.cereus B03_002	Animal, cattle (cow)	France	7/7	TH
B.c_group E2s6	Soil (2002)	UK, England, Berkshire	7/7	P
B.c_group C3s2	Soil (2002)	UK, England, Berkshire	7/7	P
B.cereus XJ12BC97	Food (2012)	China, Uygur Region	7/7	P
B.c_group C3o14	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group E2o6	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group E2s1	Soil (2002)	UK, England, Berkshire	7/7	P
B.c_group 3466-8.1	Soil [non-pathogenic; Pasteur Institute]	France, Paris	7/7	P
B.c_group E2o10	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group E2o1	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group E2o7	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group C3o41	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group B4s5	Soil (2002)	UK, England, Berkshire	7/7	P
B.cereus F4794	Human, blood (1982) [pneumonia]	USA, Michigan	7/7	P
B.cereus 2004721597	Other, hair clippers (2004)	USA, Georgia	7/7	P
B.c_group KW15	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.c_group C3o19	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group C3s3	Soil (2002)	UK, England, Berkshire	7/7	P
B.thuringiensis PLBB15/2	Soil (2012)	Poland	7/7	P
B.c_group E2m2	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.cereus S6586	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6613	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.c_group C3m4	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group AH1308	Human, faeces/stools	Germany, Karlsruhe	7/7	TH
B.cereus S6609	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus B03_003	Animal, cattle (cow)	France	7/7	TH
B.cereus S6579	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.c_group C3s4	Soil (2002)	UK, England, Berkshire	7/7	P
B.c_group KW28	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.c_group PL14	Soil		7/7	P
B.c_group B4s2	Soil (2002)	UK, England, Berkshire	7/7	P
B.c_group KW20	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.c_group B4g4	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group PEYR9	Soil [non-pathogenic; Pasteur Institute]	France, Paris	7/7	P
B.c_group E2s4	Soil (2002)	UK, England, Berkshire	7/7	P
B.cereus R_3238/03	Human, blood (2003) [human septicaemia]	UK, England	7/7	P
B.c_group FSLM8-0214	Dairy products, milk products (2012)	USA	7/7	P
B.c_group C3i8	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.cereus BGSC6A7#1	Other, purified from commercial probiotic BIOSUBTYL DALAT, manufactured in Vietnam [sequences conflicting with isolate BGSC6A7#2]		7/7	P
B.cereus S6581	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.c_group E2o2	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group C3i2	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group E2i6	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group C3g1	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.cereus S6554	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.c_group A4s5	Soil (2002)	UK, England, Berkshire	7/7	P
B.c_group E2o4	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group A3s2	Soil (2002)	UK, England, Berkshire	7/7	P
B.cereus 9305	Human, wound (2005)	UK, England, Torquay	7/7	P
B.thuringiensis SABCG7	Food (2017)	Austria	7/7	P
B.c_group B4o5	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group E2i1	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group C3i3	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group C3g5	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.cereus S6632	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.thuringiensis PLBPN44/2	Soil (2012)	Poland	7/7	P
B.c_group PL10	Soil		7/7	P
B.c_group E2i4	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group B4g5	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group B4g2	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P

166 isolate(s) sharing MLST alleles in supercluster 4

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis BGSC4J1	Animal, Insect, Oriental Tobacco Budworm/Cape Gooseberry Budworm (Heliothis assulta/Helicoverpa assulta)	Japan	26/26	TH, H, K, CS, P
B.thuringiensis AFS061780	Plant, Oats (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis BP865	Plant, phylloplane (1993)	Korea (South)	26/26	TH, H, K, CS, P
B.cereus B4158	Food, vegetables and (fermented) vegetable products (2012)	Netherlands	26/26	TH, H, K, CS, P
B.thuringiensis HD5			26/26	TH, H, K, CS, P
B.thuringiensis AFS018409	Plant, Oats (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis T07183			26/26	TH, H, K, CS, P
B.cereus MOD1Bc21	Plant, Natural Sesame Seeds (2015)	USA, Maryland	26/26	TH, H, K, CS, P
B.thuringiensis HD73	Animal, Insect [two complete genomes sequenced for this strain with identical MLST sequences]		26/26	TH, H, K, CS, P
B.thuringiensis HD29	Animal, Insect, Siberian moth (Dendrolimus sibiricus)	Czechoslovakia or USSR	26/26	TH, H, K, CS, P
B.thuringiensis HD133	Animal, Insect, Indian meal moth (Plodia interpunctella) [two complete genomes sequenced for this strain with identical MLST sequences]	UK, England	26/26	TH, H, K, CS, P
B.thuringiensis T07148			26/26	TH, H, K, CS, P
B.thuringiensis AK47	Soil (2010)	India, Odisha	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4J2	Animal, Insect, Indian meal moth (Plodia interpunctella)	UK, England	26/26	TH, H, K, CS, P
B.thuringiensis I13			26/26	TH, H, K, CS, P
B.thuringiensis T07153			26/26	TH, H, K, CS, P
B.thuringiensis BGSC4AE1	Animal, Insect, litter of silkworm (Bombyx mori)	Japan	26/26	TH, H, K, CS, P
B.thuringiensis Bc601	(2012)	China, Tianjin	26/26	TH, H, K, CS, P
B.thuringiensis T03a001	Animal, Insect, Mediterranean flour moth/mill moth (Ephestia kuhniella/Anagasta kuehniella) (1962)	France	26/26	TH, H, K, CS, P
B.cereus RIVMBC934	(2002)	Netherlands	26/26	TH, H, K, CS, P
B.thuringiensis 1126_1	Soil (2017)	China, Hebei Province	26/26	TH, H, K, CS, P
B.thuringiensis T07019			26/26	TH, H, K, CS, P
B.thuringiensis BR37	Plant, stored grains (2009)	Brazil, Sertanopolis	26/26	TH, H, K, CS, P
B.thuringiensis T07128			26/26	TH, H, K, CS, P
B.thuringiensis BGSC4J5	Animal, Insect, Indian meal moth (Plodia interpunctella)	UK, England	26/26	TH, H, K, CS, P
B.thuringiensis BR145	Soil, soybean field (2010)	Brazil, Parana, Bela Vista do Paraiso	26/26	TH, H, K, CS, P
B.thuringiensis 7.1o	Animal, Insect, silkworm (Bombyx mori) (2013)	UK	26/26	TH, H, K, CS, P
B.thuringiensis AFS034084	Plant, Wheat (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus MOD1Bc231	Food, food product (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus 6/27/S	Human, faeces/stools [human diarrhea]		26/26	TH, H, K, CS, P
B.thuringiensis BMB3201	Soil (2015)	China, Hubei Province	26/26	TH, H, K, CS, P
B.cereus AFS045441	(2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.c_group HuB13-1	Soil	Belgium	26/26	TH, H, K, CS, P
B.cereus AFS098022	Plant, Corn grainbin dust (2013)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS031473	Plant, Oats (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus MOD1Bc137	Food, Dietary Supplements (2015)	USA, Maryland	26/26	TH, H, K, CS, P
B.c_group ISP2954	Food		26/26	TH, H, K, CS, P
B.thuringiensis NBIN-866	Soil	China, Hubei Province	26/26	TH, H, K, CS, P
B.thuringiensis T07005			26/26	TH, H, K, CS, P
B.thuringiensis BGSC4J3	Animal, Insect, Indian meal moth (Plodia interpunctella) [two complete genomes sequenced for this strain with identical MLST sequences]	UK, England	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4G1	Animal, Insect, Greater Wax Moth/Honeycomb Moth (Galleria mellonella) (1958)	USSR	26/26	TH, H, K, CS, P
B.thuringiensis G03	Soil (2003)	China, Hebei, Baoding	26/26	TH, H, K, CS, P
B.c_group BMG1.7			26/26	TH, H, K, CS, P
B.thuringiensis HD11	Animal, Insect, Oriental Tobacco Budworm/Cape Gooseberry Budworm (Heliothis assulta/Helicoverpa assulta)	Japan	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4L3	[Wild type isolate]		26/26	TH, H, K, CS, P
B.thuringiensis Btm27	Animal, Insect, Citrus mealybug (Planococcus citri) (2010)	Egypt	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4T1	Soil (1976)	China	26/26	TH, H, K, CS, P
B.thuringiensis Leapi01	Animal, Insect, Loreyi Leafworm/Cosmopolitan (Mythimna loreyi/Leucania loreyi) dead larva	Spain	26/26	TH, H, K, CS, P
B.thuringiensis AFS043930	Plant, Oats (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis Hu4-2	Other, dust sample from maize grain silo	Spain	26/26	TH, H, K, CS, P
B.thuringiensis YWC2-8	Soil (2007)	China, Hailuo Glacier virgin forest, Sichuan basin	26/26	TH, H, K, CS, P
B.cereus MOD1Bc30	Food, Dietary Supplements (2015)	USA, Maryland	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4X1	[Wild type isolate]		26/26	TH, H, K, CS, P
B.thuringiensis BGSC4G4	Animal, Insect, Indian meal moth (Plodia interpunctella)	UK, England	26/26	TH, H, K, CS, P
B.thuringiensis YC-10	Plant, tobacco roots (2010) [two complete genomes sequenced for this strain with identical MLST sequences]	China, Hunan Province	26/26	TH, H, K, CS, P
B.thuringiensis T07030			26/26	TH, H, K, CS, P
B.cereus AFS004414	Plant, Oats plant (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus MOD1Bc235	Food, food product (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.c_group BAG3X2-2	Soil	USA, Massachusetts, Boston	25/26	TH, H, K, P, clpc, gdpd, purf, yhfl
B.thuringiensis HD136#2	Animal, Insect, rice moth (Corcyra cephalonica) [sequences conflicting with isolate HD136#1]	UK, England	7/7	P
B.thuringiensis T05033	(1975)	USA	7/7	P
B.c_group C3o34	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.cereus B06_035	Human	France	7/7	TH
B.c_group C3o35	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.thuringiensis T07058	Animal, Insect, spiny bollworm/Egyptian stemborer (Earias insulana) (1983)	France	7/7	P
B.c_group C3o20	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.thuringiensis ABTS2423	(2008)	USA	7/7	P
B.c_group C3o27	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group C3o42	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.thuringiensis IBL88	Soil (1987)	USA, North Dakota	7/7	P
B.c_group C3o25	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.thuringiensis BGSC4F4	[Wild type isolate]		7/7	P
B.c_group C3o24	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.thuringiensis BGSC4D16	[Wild type isolate]		7/7	P
B.thuringiensis BGSC4F2	Animal, Insect, Almond moth (Ephestia cautella/Cadra cautella)	Kenya	7/7	P
B.thuringiensis BGSC4XX5			7/7	P
B.thuringiensis IBL749	Soil (1984)	Nepal	7/7	P
B.thuringiensis T05005	(1964)	USA	7/7	P
B.thuringiensis IBL661	Soil (1988)	USA, Pennsylvania	7/7	P
B.thuringiensis BGSC4I5		Canada	7/7	P
B.thuringiensis IBL743	Animal, Insect, gut of an Aedes aeygpti mosquito larva (1984)	USA, Maryland	7/7	P
B.thuringiensis IBL533	Soil (1988)	Vietnam	7/7	P
B.c_group C3o17	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group C3o16	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.thuringiensis IBL441	Soil (1988)	Argentina	7/7	P
B.thuringiensis YBT-1520			7/7	P
B.thuringiensis T07180	Animal, Insect, Lepidoptera (1992)	Spain	7/7	P
B.thuringiensis IBL84	Soil (1987)	USA, Wisconsin	7/7	P
B.thuringiensis BGSC4D17	Animal, Insect, Cabbage Looper moth (Trichoplusia ni)	USA, Texas	7/7	P
B.thuringiensis IBL10012	[bears Photorhabdus/Yersinia-like toxin genes]		7/7	P
B.thuringiensis IBL159	Soil (1987)	USA, New Mexico	7/7	P
B.thuringiensis T03a361	(1990)	Australia	7/7	P
B.c_group C3o18	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group PL52	Soil	Poland	7/7	P
B.c_group C3o22	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.cereus BGSC6A75	(1996) [sequences conflicting with isolate NC1235]	Japan	7/7	P
B.thuringiensis BGSC4D14	[Wild type isolate]		7/7	P
B.thuringiensis BGSC4G6	Other, Reisolation of strain BGSC4G1		7/7	P
B.c_group C3o2	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.thuringiensis IBL3757	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL389	Soil (1986)	USA, Washington D.C.	7/7	P
B.cereus BC_26	Food, egg product (2006)	Italy (Southern)	7/7	P
B.thuringiensis IBL3782	Soil (2009)	USA, Maryland	7/7	P
B.c_group C3o32	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.thuringiensis IBL563	Soil (1988)	USA, North Carolina	7/7	P
B.thuringiensis BGSC4G2		USA	7/7	P
B.c_group C3o37	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.thuringiensis BGSC4D19	Animal, Insect, dried fruit Beetle (Carpophilus hemipterus)	UK, England	7/7	P
B.thuringiensis IBL1288	Soil (1988)	Azores	7/7	P
B.c_group E5s9	Soil (2002)	UK, England, Berkshire	7/7	P
B.thuringiensis T03a075	Animal, Insect, Small Cabbage White butterfly/Imported Cabbage Worm (Pieris rapae) (1976)	Iraq	7/7	P
B.c_group C3o9	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group C3o3	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.thuringiensis IBL3777	Soil (2009)	USA, Maryland	7/7	P
B.c_group C3o13	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.thuringiensis BGSC4I1	Animal, Insect, Indian meal moth (Plodia interpunctella)	Canada	7/7	P
B.thuringiensis BGSC4I2	Animal, Insect, Raisin moth (Cadra figulilella)	USA	7/7	P
B.thuringiensis T04b012	Animal, dead insect, Greater Wax Moth/Honeycomb Moth (Galleria mellonella) (1974)	Bulgaria	7/7	P
B.thuringiensis T03a172	(1982)	Pakistan	7/7	P
B.c_group 6_2_Y	Plant, leaves (2005)	UK, England, Dorset	7/7	P
B.thuringiensis IBL1252	Soil (1987)	Korea (South)	7/7	P
B.c_group C3o38	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.thuringiensis IBL1247	Soil (1987)	Korea (South)	7/7	P
B.c_group C3o12	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.cereus BFDA95191	(2006)	Taiwan, Taipei county	7/7	P
B.cereus S59	Soil, mud	USA, Maryland	7/7	P
B.thuringiensis BGSC4D5	[Wild type isolate]		7/7	P
B.thuringiensis T05114	Other, Astiniae (1985)	France	7/7	P
B.thuringiensis BGSC4G3	[Wild type isolate]		7/7	P
B.thuringiensis IBL1268	Soil (1988)	Argentina	7/7	P
B.c_group C3o11	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.thuringiensis ABTS351	(2008)	USA	7/7	P
B.thuringiensis BGSC4D15	[Wild type isolate]		7/7	P
B.c_group C3o21	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.thuringiensis 164-S-1	Plant, leaves of clover (Trifolium hybridum) (2004)	UK	7/7	P
B.thuringiensis ABTS2279	(2008)	USA	7/7	P
B.thuringiensis T04b001	(1962)	Kenya	7/7	P
B.c_group E5g1	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group C3o8	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group K14_5759	(2014)	Korea (South)	7/7	P
B.cereus BGSC6A78	Human, wound infection (2004) [sequences conflicting with isolate 211250.S]	UK, Scotland	7/7	P
B.thuringiensis IBL1254	Soil (1987)	Korea (South)	7/7	P
B.c_group C3o4	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group C3o29	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group E2o20	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.thuringiensis IBL999	Soil (1984)	USA, Maryland	7/7	P
B.cereus S57	Soil, mud	USA, Maryland	7/7	P
B.c_group D10-18.A.i	Soil (2006)	UK	7/7	P
B.c_group C3o6	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.cereus S58	Animal, swan faeces/stools	USA, Maryland	7/7	P
B.thuringiensis T04b073	Soil (1993)	Chile	7/7	P
B.thuringiensis IBL966	Soil (1984)	Nepal	7/7	P
B.thuringiensis 248-S-1	Plant, leaves of clover (Trifolium hybridum) (2004)	UK	7/7	P
B.c_group C3o10	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group C3o15	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group DiPel	Other, DiPel insecticide		7/7	P
B.thuringiensis T07033	Animal, Insect, Oriental Tobacco Budworm/Cape Gooseberry Budworm (Heliothis assulta/Helicoverpa assulta) (1975)	Japan	7/7	P
B.thuringiensis T04b054	(1986)	Iraq	7/7	P
B.thuringiensis BGSC4E7	(1991) [sequences conflicting with isolate T04236]	Indonesia	7/7	P
B.thuringiensis BGSC4D18	Animal, Insect, Cabbage Looper moth (Trichoplusia ni)	USA	7/7	P
B.thuringiensis T03a287	(1988)	Kenya	7/7	P
B.c_group C3o36	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group E5m5	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.thuringiensis Dt7.1.o	Plant, leaves of wild mustard (Brassica oleracea) (2005)	UK, England, Dorset	7/7	P
B.c_group C3o28	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.thuringiensis T04b060	Animal, Insect, Almond moth (Ephestia cautella/Cadra cautella) (1987)	Iraq	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 5

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus BC_24	Food, egg product (2006)	Italy (Southern)	7/7	P
B.cereus BC_1	Food, egg product (2006)	Italy (Southern)	7/7	P
B.thuringiensis NRRLB-23152	Animal, Insect, Isoptera (2013)	UK	7/26	P

235 isolate(s) sharing MLST alleles in supercluster 6

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS098742	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS043533	Plant, Soybean root (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.cereus AFS063234	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS080281	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS094460	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS070662	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS070860	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS071044	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS023898	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.cereus AFS061448	Soil (2013)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS006012	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS081512	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS054163	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS024693	Plant, Weed core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS002848	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS095703	Plant, Weed core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS059198	Plant, Weed core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS034246	Soil (2013)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS060105	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS002094	Plant, Corn plant (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS057596	Plant, Weed core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS000937	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS093334	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS097327	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS025457	Plant, Corn leaf (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS096642	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS075467	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS046340	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS044547	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS073631	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS056399	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS052902	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS073833	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS014598	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS069947	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS068756	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS078211	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS011531	Plant, Corn plant (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS024629	Soil (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS035044	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS042006	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS046374	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS059650	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS029513	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS029617	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS070964	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS018668	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS068289	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS038688	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS092789	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS009778	Soil (2013)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS084075	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS099621	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS093186	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS015939	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS048213	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS051540	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS054833	Plant, Weed core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS044880	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4AR1	Soil	China	26/26	TH, H, K, CS, P
B.c_group BAG5X12-1	Soil	USA, Massachusetts, Boston	26/26	TH, H, K, CS, P
B.cereus AFS048966	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS006065	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS079244	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS070891	Plant, Corn (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS068806	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS043896	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS053336	Plant, Weed core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS074793	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS071863	Plant, Weed core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS017211	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS032567	Plant, Corn (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS070947	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS057690	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS025653	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS044520	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS095498	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS067935	Plant, Weed core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS074515	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS057097	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS087654	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4AT1	(1986)	Japan	26/26	TH, H, K, CS, P
B.cereus AFS076104	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS009411	Plant, Soybean root (2014)	USA, Missouri	26/26	TH, H, K, CS, P
B.cereus AFS017032	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS051634	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS090123	Plant, Corn plant (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS038126	Plant, Weed core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS017947	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS071440	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS013685	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS088317	Soil (2013)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS025349	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS099737	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS048598	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS088704	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS008265	Plant, Corn (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS007743	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS045348	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS038041	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS007693	Soil (2013)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS008436	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS093925	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.cereus AFS020204	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS048015	Plant, tree leaf (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS075408	Soil (2013)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS084233	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS001538	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS037512	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS080604	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS003289	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS068876	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS005998	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS045869	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS035954	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS004701	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS030663	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS030742	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS076729	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS018041	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS082261	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS023730	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS029679	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS025490	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS072104	Soil (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS080164	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS021466	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS030991	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS014136	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS001977	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS001542	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS065770	Plant, Weed core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS042863	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS063645	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS080756	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS043359	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS066354	Soil (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS042307	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS071251	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS018489	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS030860	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS057502	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS059960	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS053259	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS013997	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS048989	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS026537	Plant, Weed core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS083123	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS009035	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS046747	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS039950	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS085871	Plant, Weed core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS075030	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS040986	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS062062	Plant, Core Corn (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS084355	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS082683	Plant, Soybean leaf (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.cereus AFS013880	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS087824	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS095018	Plant, Weed core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.c_group BAG4X12-1	Soil	USA, Massachusetts, Boston	26/26	TH, H, K, CS, P
B.cereus AFS045152	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS010831	Soil (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS089527	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS015717	Plant, Weed core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS076401	Soil (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS038754	Soil (2013)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS045887	(2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS095548	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS093397	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS000524	Plant, Weed core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS081367	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS039692	Soil (2013)	USA, North Carolina	25/25	K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus AFS001900	Plant, Corn plant (2014)	USA, North Carolina	25/25	K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus AFS023720	Soil (2013)	USA, North Carolina	25/25	K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus AFS022169	Plant, Corn core (2014)	USA, North Carolina	25/25	K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus AFS044532	Plant, Corn root (2014)	USA, Iowa	25/25	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.cereus AFS047280	Plant, Corn core (2014)	USA, North Carolina	25/25	K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus AFS011058	Plant, Corn plant (2014)	USA, North Carolina	25/25	K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus SJ-S3	Human	USA, Tennessee, Memphis	25/25	TH, K, CS, P, ftsa, pyre, recf
B.cereus AFS089031	Plant, Weed core (2014)	USA, North Carolina	25/25	K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus AFS029052	Plant, Weed core (2014)	USA, North Carolina	25/25	K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus AFS016599	Plant, Corn (2014)	USA, North Carolina	25/25	K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus AFS032444	Plant, Corn core (2014)	USA, North Carolina	25/26	H, K, CS, glpf, gmk, ilvd, pta, purh, tpi
B.cereus AFS081469	Plant, Corn core (2014)	USA, Illinois	25/26	H, K, CS, glpf, gmk, ilvd, purh, pyca2, tpi
B.cereus AFS071107	Plant, Soybean root (2014)	USA, Iowa	25/26	H, K, CS, glpf, gmk, ilvd, pta, purh, tpi
B.cereus AFS087793	Plant, Weed plant (2014)	USA, North Carolina	25/26	H, K, CS, glpf, gmk, ilvd, purh, pyca2, tpi
B.cereus AFS025120	Plant, Soybean core (2014)	USA, Iowa	25/26	TH, H, CS, P, gyrb, mbl, mdh, pyca1, rpob
B.cereus AFS036381	Plant, Corn core (2014)	USA, North Carolina	25/26	TH, H, K, P, clpc, dinb, gdpd, purf
B.cereus AFS040106	Plant, Corn core (2014)	USA, North Carolina	25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.cereus AFS055648	Plant, Corn core (2014)	USA, North Carolina	25/26	TH, H, K, P, clpc, dinb, gdpd, yhfl
B.cereus AFS097377	Plant, Corn core (2014)	USA, North Carolina	25/26	TH, H, K, CS, gmk, ilvd, tpi
B.cereus AFS028424	Plant, Corn core (2014)	USA, North Carolina	25/26	K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus AFS043413	Soil (2014)	USA, New York	25/26	TH, H, K, P, clpc, gdpd, purf, yhfl
B.cereus AFS017068	Plant, Corn core (2014)	USA, North Carolina	25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.cereus AFS088052	Plant, Corn core (2014)	USA, Illinois	25/26	TH, H, K, P, dinb, gdpd, purf, yhfl
B.cereus AFS086528	Plant, core (2014)	USA, North Carolina	25/26	K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus AFS052400	Plant, Corn core (2014)	USA, Illinois	25/26	TH, H, K, P, dinb, gdpd, purf, yhfl
B.cereus AFS073305	Plant, Corn core (2014)	USA, North Carolina	25/26	K, CS, P, adk, ftsa, glpt, pyre, recf, succ
B.cereus AFS085674	Plant, Corn core (2014)	USA, North Carolina	25/26	TH, K, CS, P, ftsa, pyre, succ
B.cereus AFS008413	Soil (2014)	USA, New York	25/26	TH, H, K, CS, gmk, ilvd, tpi
B.cereus AFS009093	Plant, Corn core (2014)	USA, North Carolina	25/26	H, K, CS, glpf, gmk, ilvd, purh, pyca2, tpi
B.cereus AFS043837	Plant, Corn core (2014)	USA, North Carolina	25/26	TH, H, K, P, dinb, gdpd, purf, yhfl
B.cereus AFS097130	Plant, Corn core (2014)	USA, North Carolina	25/26	TH, H, K, P, clpc, dinb, gdpd, yhfl
B.cereus AFS037926	Plant, Soybean core (2014)	USA, Iowa	25/26	H, K, CS, glpf, gmk, ilvd, pta, purh, tpi
B.cereus Rock4-2	Soil	USA, Maryland, Rockville	24/24	TH, CS, P, ftsa, mbl, mdh, muts, pyca1, pyre, rpob, succ
B.cereus AFS054178	Plant, Corn core (2014)	USA, North Carolina	24/26	K, CS, P, adk, ccpa, ftsa, pyre, recf
B.cereus AFS085606	Soil (2014)	USA, North Carolina	24/26	K, P, ccpa, clpc, ftsa, gdpd, glpt, panc, purf, pyre, recf, succ, yhfl
B.cereus AFS011950	Plant, Corn core (2014)	USA, North Carolina	24/26	H, CS, glpf, gmk, gyrb, ilvd, mdh, muts, pta, purh, pyca1, rpob, tpi
B.cereus AFS041497	Plant, core (2014)	USA, North Carolina	24/26	TH, K, CS, ftsa, ilvd, purh, recf, succ, tpi
B.cereus AFS056025	Plant, Corn core (2014)	USA, Illinois	24/26	H, K, clpc, dinb, gdpd, gmk, ilvd, panc, pta, purh, pyca2, tpi, yhfl
B.cereus AFS028351	Plant, core (2014)	USA, North Carolina	23/26	CS, P, adk, ftsa, glpt, mdh, muts, pyca1, pyre, recf, rpob, succ
B.thuringiensis Buibui	Animal, Insect, Coleoptera (2013)	UK	23/26	TH, H, K, clpc, gdpd, ilvd, purf, purh, tpi
B.thuringiensis KNU-07	Plant, Ginseng (2015)	Korea (South)	22/26	H, K, clpc, dinb, gmk, ilvd, pta, purf, pyca2, tpi, yhfl
B.cereus AFS088784	Plant, Corn core (2014)	USA, North Carolina	22/26	H, K, clpc, gdpd, gmk, panc, pta, purf, pyca2, tpi, yhfl
B.thuringiensis BGSC4CA1		Korea (South)	21/26	K, P, clpc, ftsa, glpt, panc, pyre, recf, succ, yhfl
B.cereus AFS076596	Soil (2014)	USA, New York	20/26	K, CS, ftsa, glpf, gmk, ilvd, pta, pyre, succ, tpi
B.cereus AFS090431	Plant, Oats plant (2014)	USA, North Carolina	20/26	K, CS, adk, ccpa, gmk, pyca2, pyre, recf, succ, tpi
B.cereus AFS061148	Plant, Weed core (2014)	USA, North Carolina	17/26	P, ccpa, gdpd, muts, purf, pyca1, pyre, recf, rpob, succ, yhfl
B.cereus AFS010272	Plant, Corn core (2014)	USA, Illinois	17/26	H, clpc, dinb, glpf, gmk, mbl, mdh, purf, pyca1, rpob, tpi
B.thuringiensis ST7			16/26	K, P, ftsa, gdpd, yhfl
B.cereus AFS062641	Plant, core (2014)	USA, North Carolina	15/26	K, ccpa, dinb, ftsa, glpt, pta, purf, purh, recf, succ
B.cereus AFS018281	Plant, Corn core (2014)	USA, North Carolina	14/26	K, adk, dinb, ilvd, pta, purh, recf, succ, tpi
B.cereus AFS058833	Plant, Corn core (2014)	USA, North Carolina	14/26	K, ftsa, glpt, pyca2, pyre, recf, succ, tpi, yhfl
B.cereus HB11BC185	Food packaging (2011)	China, Hebei Province	7/7	P
B.c_group KW35	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.cereus S6625	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.thuringiensis BGSC4D12	Animal, Insect, Almond moth (Ephestia cautella/Cadra cautella)	UK, England	7/7	P
B.cereus S6630	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.c_group KW29	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.c_group KW61	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.cereus 2004721590	Soil, mud (2004)	USA, Georgia	7/7	P
B.c_group 20166	Food (2013)	China	7/7	P
B.cereus S6639	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus 2004721589	Soil, mud (2004)	USA, Georgia	7/7	P

117 isolate(s) sharing MLST alleles in supercluster 7

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus FSLR5-0811	Dairy products, pasteurized milk (2006)	USA	26/26	TH, H, K, CS, P
B.weihenstephanensis FSLR5-860	Dairy products, pasteurized milk (2006)	USA	26/26	TH, H, K, CS, P
B.cereus FSLM8-0473	(2015)	USA	26/26	TH, H, K, CS, P
B.cereus FORC024	Food, chicken soup	Korea (South), Incheon	26/26	TH, H, K, CS, P
B.cereus BDRD-Cer4	[Biological Defense Research Directorate (BDRD)]	USA, Maryland, Rockville	26/26	TH, H, K, CS, P
B.cereus AFS012400	Plant, Cucumber plant (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus 16-00196			26/26	TH, H, K, CS, P
B.cereus AH725	Human, eye (1995)	Norway, Skien	26/26	TH, H, K, CS, P
B.cereus B4155	Food (2013)	Netherlands	26/26	TH, H, K, CS, P
B.c_group VD045	Soil	Greenland	26/26	TH, H, K, CS, P
B.cereus 16SBCL1279	Human, Breast milk (2016)	France, Ile-de-France Lactarium, Paris	26/26	TH, H, K, CS, P
B.cereus AFS011918	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus FORC021	Other, Knife	Korea (South), Ulsan	26/26	TH, H, K, CS, P
B.cereus AFS053406	Plant, Corn plant (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis Pasteur_Standard	[two complete genomes sequenced for this strain with identical MLST sequences]		25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.cereus BHU1	Soil, Cropfield soil (2016)	India	25/26	TH, H, K, P, clpc, dinb, gdpd, yhfl
B.cereus MOD1Bc92	Food, Whole Black Pepper (2015)	USA, Maryland	25/26	TH, H, CS, P, mbl, mdh, muts, pyca1, rpob
B.cereus F4430/73	Other, pea soup or faeces/stools (1973) [diarrheal food poisoning outbreak]	Belgium	25/26	TH, H, K, P, clpc, dinb, gdpd, purf
B.cereus MOD1Bc218	Other, Baby Wipes (2016)	USA, Maryland	25/26	K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus LK9	(2010)	Malaysia, Malacca	25/26	TH, H, CS, P, gyrb, mbl, mdh, pyca1, rpob
B.cereus SJ-S27	Human	USA, Tennessee, Memphis	25/26	TH, H, K, CS, gmk, purh, tpi
B.cereus A8S3	Other, Sediments (2003)	Pacific Ocean	25/26	TH, H, CS, P, gyrb, mbl, mdh, pyca1, rpob
B.cereus 16-00198			25/26	TH, H, K, P, clpc, dinb, gdpd, yhfl
B.cereus AFS070416	Plant, core (2014)	USA, North Carolina	25/26	TH, H, K, P, dinb, gdpd, purf, yhfl
B.c_group VD169	Soil	UAE, Dubai	25/26	TH, K, CS, P, ftsa, pyre, succ
B.cereus INRAC3	Food, pasteurized carrot (1996) (1996)	France, Vaucluse	25/26	TH, H, K, P, dinb, gdpd, purf, yhfl
B.cereus Co15	Other, Sediments (2003)	Pacific Ocean	24/26	K, P, adk, clpc, dinb, ftsa, gdpd, glpt, panc, pyre, recf, succ, yhfl
B.c_group VD166	Soil	UAE, Dubai	24/26	TH, H, K, P, dinb, gdpd, yhfl
B.cereus B4081	Food (2013)	Netherlands	24/26	TH, H, P, clpc, dinb, gdpd, gyrb, mbl, mdh, purf, pyca1, rpob
B.cereus 16-00184			24/26	TH, H, P, clpc, dinb, gdpd, gyrb, mdh, muts, purf, pyca1, rpob
B.cereus FSLK6-1030	Dairy products, condensed milk (2013)	USA	24/26	TH, H, K, P, clpc, dinb, gdpd
B.cereus MOD1Bc230	Food, food product (2016)	USA, Maryland	24/26	TH, H, P, clpc, gdpd, mbl, mdh, muts, purf, pyca1, rpob, yhfl
B.cereus C1L	Soil or plant, rhizosphere (2003)	Taiwan, Taroko National Park, Hualien	23/25	H, K, clpc, dinb, gdpd, glpf, gmk, ilvd, purf, purh, pyca2, yhfl
B.cereus SJ-S23	Human	USA, Tennessee, Memphis	23/25	TH, K, clpc, dinb, gdpd, gmk, purf, purh, pyre, recf, succ, tpi
B.cereus B4120	Food (2013)	Netherlands	23/26	TH, H, P, clpc, dinb, gdpd, mbl, muts, pyca1, rpob, yhfl
B.thuringiensis T69001		Malaysia	23/26	TH, K, P, clpc, dinb, ftsa, purf, pyre, succ
B.cereus ATCC14579	Other, Farm, cow-shed air (1916)	USA	23/26	TH, K, CS, ftsa, ilvd, purh, recf, succ
B.cereus Rock1-15	Soil	USA, Maryland, Rockville	22/26	K, P, adk, clpc, dinb, ftsa, gdpd, glpt, panc, recf, succ
B.cereus E41	Other, salt lake (2016)	Algeria, Ain Mlila-Oum El Bouaghi	22/26	H, clpc, dinb, gdpd, gmk, gyrb, ilvd, mbl, muts, panc, pta, purh, pyca1, pyca2, rpob, tpi
B.cereus MOD1Bc86	Food, Whole Black Pepper (2015)	USA, Maryland	22/26	TH, H, clpc, dinb, gdpd, gmk, gyrb, ilvd, mdh, muts, purh, pyca1, rpob
B.thuringiensis BGSC4BW1		Spain	22/26	H, P, clpc, dinb, gdpd, gyrb, mbl, muts, pyca1, rpob
B.cereus MOD1Bc85	Food, Ground Black Pepper (2015)	USA, Maryland	21/26	K, adk, dinb, ftsa, gdpd, glpf, glpt, gmk, panc, purf, purh, pyca2, pyre, recf, succ, tpi
B.cereus SJ-S9	Human	USA, Tennessee, Memphis	20/20	TH, CS, ilvd, mbl, mdh, purh, recf, rpob, succ, tpi
B.thuringiensis BGSC4H2	(1968)	Canada	20/26	TH, clpc, dinb, ftsa, gdpd, gyrb, ilvd, mbl, mdh, purh, pyca1, recf, rpob, succ
B.thuringiensis BGSC4CF1		Malaysia	19/26	K, adk, clpc, dinb, glpf, glpt, gmk, ilvd, panc, pta, purh, pyca2, pyre, succ
B.c_group VD196	Soil	UAE, Dubai	18/26	H, dinb, gmk, gyrb, ilvd, mbl, mdh, panc, pyca1, pyca2, rpob, tpi
B.c_group AH716	Human, pus	Norway, Skien	11/11	TH, H
B.c_group AH1294	Human, blood	Norway, Tromsoe	11/11	TH, H
B.c_group AH889	Human, blood	Norway	11/11	TH, H
B.c_group AH1293	Human, blood	Norway, Tromsoe	11/11	TH, H
B.c_group AH726	Human, urine	Norway, Skien	11/11	TH, H
B.c_group K15_115	(2014)	Korea (South)	7/7	P
B.cereus R_2955/03	Human, blood (2003) [human septicaemia]	UK, England	7/7	P
B.thuringiensis T09010	(1979)	USA	7/7	P
B.cereus B548			7/7	P
B.cereus BC_32	Food, ready-to-eat product (2006)	Italy (Northwestern)	7/7	P
B.cereus 108229.N	Human, wound infection (2004)	UK, Scotland	7/7	P
B.cereus NC1292	Food, rice (1999)	Japan	7/7	P
B.cereus CBC_99006	Human, diarrhea	Japan	7/7	P
B.c_group BC00001	Dairy products, milk products (2017)	Italy, Apulia	7/7	P
B.cereus 134070.J	Human, wound infection (2004)	UK, Scotland	7/7	P
B.cereus Sve1	Human, blood (2003)	Italy	7/7	P
B.c_group FSLR5-0859	Dairy products, milk products (2006)	USA	7/7	P
B.cereus XA12-18	Dairy products, milk products (2012)	China	7/7	P
B.cereus F6722	Food (1985) [diarrheal food poisoning]	USA, Alabama	7/7	P
B.cereus R_3149/03	Human, blood (2003) [human septicaemia]	UK, England	7/7	P
B.cereus NC1225	Human, faeces/stools (1996)	Japan	7/7	P
B.thuringiensis BGSC4L5	(1990) [sequences conflicting with isolate T09020]	Italy	7/7	P
B.cereus 149041.S	Human, wound infection (2004)	UK, Scotland	7/7	P
B.thuringiensis T09052	Other, spider web (1999)	Canada	7/7	P
B.thuringiensis T09011	Animal, Insect, Lepidoptera (1987)	Iraq	7/7	P
B.c_group MCCC1A00495	Other, sediments (2005)	Pacific Ocean	7/7	P
B.c_group MCCC1A06185	Other, middle seawater (2009)	Pacific Ocean	7/7	P
B.cereus CBC_03004	Human, diarrhea	Japan	7/7	P
B.c_group K14_4528	(2014)	Korea (South)	7/7	P
B.cereus BC_5	Food, egg product (2006)	Italy (Southern)	7/7	P
B.c_group MCCC1A06184	Other, surface seawater (2009)	Pacific Ocean	7/7	P
B.cereus NC499	Food (1983)	Japan	7/7	P
B.cereus LFB541	Food, Rice cream (1982)	Brazil	7/7	TH
B.c_group MCCC1A01400	Other, sediments (2006)	Indian Ocean	7/7	P
B.cereus F2668/90	Food, lamb (1990) [diarrheal food poisoning outbreak]	Netherlands	7/7	P
B.cereus S6566	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.c_group MCCC1A00432	Other, sediments (2005)	Pacific Ocean	7/7	P
B.cereus 2003-I-1254	Human, blood (2003) [human, fatal]	USA, Oregon	7/7	P
B.cereus BGSC6A42	Food packaging [sequences conflicting with isolate TSP8]		7/7	P
B.cereus 200593.X	Human, wound infection (2004)	UK, Scotland	7/7	P
B.thuringiensis T09034	(1992)	Brazil	7/7	P
B.cereus K15-3447	Human, faeces/stools (2015)	Korea (South)	7/7	P
B.cereus BFDA96117	Food (2007)	Taiwan, Taoyuan county	7/7	P
B.cereus F99/5941	Other, environmental (1999) [food-water-environment survey isolate]		7/7	P
B.c_group MCCC1A08490	Other, sediments (2011)	Arctic Ocean	7/7	P
B.c_group MCCC1A01874	Other, sediments (2006)	Pacific Ocean	7/7	P
B.c_group MCCC1A00298	Other, sediments (2006)	Pacific Ocean	7/7	P
B.cereus BC_17	Food, egg product (2006)	Italy (Southern)	7/7	P
B.cereus BC_29	Food, ready-to-eat product (2006)	Italy (Northwestern)	7/7	P
B.c_group MCCC1A00418	Other, sediments (2005)	Pacific Ocean	7/7	P
B.cereus EFBC85	Food (2017)	Austria	7/7	P
B.thuringiensis IBL695	Soil (1976)	Hawaii	7/7	P
B.thuringiensis T09024	(1991)	Indonesia	7/7	P
B.c_group MCCC1A06183	Other, bottom seawater (2009)	Pacific Ocean	7/7	P
B.cereus 177147.Y	Human, wound infection (2005)	UK, Scotland	7/7	P
B.cereus BFDA96166	Food, rice (2007)	Taiwan, Taipei county	7/7	P
B.c_group MCCC1A00360	Other, sediments (2006)	Pacific Ocean	7/7	P
B.cereus BFDA95192	(2006)	Taiwan, Taipei county	7/7	P
B.cereus D8096	Human, blood (1971)	USA, Louisiana	7/7	P
B.c_group MCCC1A08292	Other, sediments (2011)	Arctic Ocean	7/7	P
B.cereus 2003-I-1253	Human, blood (2003) [human septicaemia, fatal]	USA, Oregon	7/7	P
B.c_group MCCC1A04083	Other, surface seawater (2009)	Pacific Ocean	7/7	P
B.thuringiensis BGSC4L1	Animal, Insect, Almond moth (Cadra cautella) [sequences conflicting with isolate HD125]	UK, England	7/7	P
B.cereus 000-843-51	Human, blood (2004) [human pneumonia]	Japan	7/7	P
B.cereus G2008	Human, faeces/stools (1988) [food poisoning]	USA, Pennsylvania	7/7	P
B.thuringiensis BGSC4L2	Animal, Insect, Almond moth (Ephestia cautella/Cadra cautella)	UK, England	7/7	P
B.cereus BC_9	Food, egg product (2006)	Italy (Southern)	7/7	P
B.cereus 201183.D	Human, wound infection (2003)	UK, Scotland	7/7	P
B.cereus 653-154-7	Human, blood (2003) [human pneumonia]	Japan	7/7	P
B.cereus HF16	Food (2014)	Germany, Berlin	7/7	P
B.cereus B06_036	Human, blood	Tahiti, Papeete	7/7	TH

3 isolate(s) sharing MLST alleles in supercluster 8

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus MOD1Bc69	Food, Paprika (2015)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc18	Plant, Sesame Seed White (2015)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc75	Plant, Sesame Seed (2015)	USA, Maryland	26/26	TH, H, K, CS, P

71 isolate(s) sharing MLST alleles in supercluster 9

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis HD521	Soil, soybean field	USA, Indiana	26/26	TH, H, K, CS, P
B.thuringiensis GOE4#1	Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)	Germany, Goettingen	26/26	TH, H, K, CS, P
B.c_group BAG4O-1	Soil	USA, Massachusetts, Boston	26/26	TH, H, K, CS, P
B.cereus AFS041041	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS096226	Plant, Soybean leaf (2013)	USA, Minnesota	26/26	TH, H, K, CS, P
B.cereus AFS001073	Plant, Weed leaf (2014)	USA, Ohio	26/26	TH, H, K, CS, P
B.c_group BAG3O-2	Soil	USA, Massachusetts, Boston	26/26	TH, H, K, CS, P
B.cereus AFS072350	Plant, Soybean leaf (2013)	USA, Minnesota	26/26	TH, H, K, CS, P
B.cereus AFS064975	(2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS097474	Plant, Weed leaf (2014)	USA, Indiana	26/26	TH, H, K, CS, P
B.cereus AFS002102	Plant, Soybean leaf (2013)	USA, Minnesota	26/26	TH, H, K, CS, P
B.cereus AFS015304	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS011006	Plant, Soybean leaf (2013)	USA, Minnesota	26/26	TH, H, K, CS, P
B.cereus AFS002530	Plant, Weed leaf (2014)	USA, Ohio	26/26	TH, H, K, CS, P
B.cereus tsu1	Other, contaminated cellulose-agar plate (2009)	USA, Tennessee, Nashville	26/26	TH, H, K, CS, P
B.cereus LCR12	Plant, karkalla (Carpobrotus rossii) (2014) [from Cadmium-contaminated soil]	Australia, Melbourne	26/26	TH, H, K, CS, P
B.cereus AFS016365	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS034541	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS003410	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.cereus AFS009734	Plant, Weed core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus K8#2	Food, Korean fermented food (2016)	Korea (South)	26/26	TH, H, K, CS, P
B.cereus AFS033276	Plant, tree leaf (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS063157	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS060282	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus FSLW8-0767	Other, Sifter powder (2012)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS029029	Plant, Corn (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS051626	Plant, Weed leaf (2014)	USA, Indiana	26/26	TH, H, K, CS, P
B.cereus AFS093833	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS003807	Plant, Corn core (2014)	USA, North Carolina	25/26	TH, H, K, P, clpc, dinb, gdpd, purf
B.thuringiensis BGSC4BF1		Germany	25/26	TH, H, K, P, dinb, gdpd, purf, yhfl
B.cereus AFS070889	Plant, Corn core (2014)	USA, North Carolina	25/26	TH, H, K, P, clpc, dinb, gdpd, yhfl
B.thuringiensis INTAFr7-4	Soil	Argentina, Misiones	25/26	TH, H, K, P, clpc, dinb, gdpd, purf
B.cereus AFS086321	Plant, core (2014)	USA, North Carolina	25/26	H, K, P, clpc, dinb, gdpd, purf, yhfl
B.cereus SJ-S19	Human	USA, Tennessee, Memphis	24/24	TH, H, K, clpc, dinb, gdpd, gmk, ilvd, tpi, yhfl
B.cereus 172560.W	Human, burn wound (2003) [human wound infection]	UK, Scotland, Glasgow	24/26	TH, H, K, P, clpc, gdpd, purf
B.cereus MOD1Bc57	Other, Baby Wipes (2016)	USA, Maryland	24/26	H, K, CS, gmk, ilvd, purh, pyca2, tpi
B.cereus AFS024973	Plant, core (2014)	USA, North Carolina	24/26	H, CS, gmk, gyrb, ilvd, mdh, muts, pta, purh, pyca1, pyca2, rpob, tpi
B.cereus MOD1Bc139	Food, Dietary Supplements (2015)	USA, Maryland	24/26	TH, H, P, dinb, gdpd, gyrb, mdh, muts, purf, pyca1, rpob, yhfl
B.cereus AFS099102	Plant, Weed leaf (2014)	USA, Indiana	24/26	TH, H, K, clpc, dinb, gdpd, gmk, ilvd, purf, tpi
B.cereus SJ-S22			23/23	P, ccpa, dinb, ftsa, gdpd, glpt, gyrb, mbl, mdh, muts, panc, purf, pyca1, pyre, recf, succ, yhfl
B.cereus AFS041581	Plant, Soybean root (2014)	USA, Missouri	22/26	P, adk, clpc, dinb, ftsa, gdpd, glpt, gyrb, mdh, muts, purf, pyca1, pyre, rpob, succ, yhfl
B.cereus A1	Other, sludge of an anaerobic digestion reactor (2011) [efficient starch-utilizing producer of hydrogen]	China, Beijing	21/26	K, P, adk, ccpa, ftsa, panc, pyre, recf, succ, yhfl
B.cereus AH1134	Human, eye [pediatric endophthalmitis case]	USA, Oklahoma	21/26	TH, H, K, dinb, gdpd, purf, tpi
B.cereus SJ-S5	Human	USA, Tennessee, Memphis	20/24	K, adk, ccpa, clpc, dinb, glpf, glpt, gmk, ilvd, pta, purf, purh, pyre, recf, succ
B.cereus SJ-S10	Human	USA, Tennessee, Memphis	20/24	K, adk, ccpa, clpc, ftsa, gdpd, glpf, glpt, ilvd, pta, purf, pyca2, pyre, recf, tpi
B.cereus AFS093276	Plant, core (2014)	USA, North Carolina	20/26	P, adk, dinb, ftsa, gdpd, glpt, gyrb, mdh, muts, purf, pyre, recf, rpob, succ
B.cereus SJ-S29	Human	USA, Tennessee, Memphis	20/26	K, ccpa, ftsa, gdpd, glpt, gmk, ilvd, panc, pta, purf, purh, pyca2, pyre, succ, tpi
B.thuringiensis DB27	[highly nematicidal]		17/26	K, P, ftsa, glpt, purf, recf
B.c_group AH1129	Human, eye	USA, Oklahoma	11/11	TH, H
B.thuringiensis 2008724754	Animal, Insect, dung beetle (2009)	Germany	7/7	P
B.thuringiensis IBL3576	Soil (1983)	USA, Pennsylvania	7/7	P
B.thuringiensis 2008724756	Animal, Insect, dung beetle (2009)	Germany	7/7	P
B.thuringiensis 2008724755	Animal, Insect, dung beetle (2009)	Germany	7/7	P
B.c_group K14_5491	(2014)	Korea (South)	7/7	P
B.c_group C3g6	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.cereus B06_034	Human	France	7/7	TH
B.cereus F95/2410	Human, gangrene, cellulitis; Public Health Laboratory (1995)	UK, Wales, Cardiff	7/7	P
B.thuringiensis HD516	Soil, soybean field	USA	7/7	P
B.cereus E1149	Human, lung (1978)	USA, Missouri	7/7	P
B.cereus 101937.Q	Human, wound infection (2004)	UK, Scotland	7/7	P
B.c_group KW38	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.cereus 140936.S	Human, wound infection (2004)	UK, Scotland	7/7	P
B.thuringiensis T13028	Soil (1993)	Chile	7/7	P
B.thuringiensis IBL77	Soil (1988)	USA, Wyoming	7/7	P
B.c_group KW22	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.cereus 180215.F	Human, wound infection (2004)	UK, Scotland	7/7	P
B.thuringiensis 2013746963	Human, blood (2013) [human vomiting]	USA, California, San Diego	7/7	P
B.c_group Wang			7/7	P
B.thuringiensis IBL673	Soil (1987)	USA, New Hampshire	7/7	P
B.cereus S6637	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.c_group FSLM8-0139	Dairy products, milk products (2012)	USA	7/7	P

209 isolate(s) sharing MLST alleles in supercluster 10

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.anthracis 2000032989			26/26	TH, H, K, CS, P
B.anthracis Ba-7673/89-Geo	Soil (1989)	Georgia	26/26	TH, H, K, CS, P
B.anthracis KrugerB	[pXO1+/pXO2+]	South Africa, Kruger National Park	26/26	TH, H, K, CS, P
B.anthracis 2000032975	(1966)		26/26	TH, H, K, CS, P
B.anthracis 3166	Soil	Bulgaria	26/26	TH, H, K, CS, P
B.anthracis Ba-8784/92-Geo	Food, Beef (1992)	Georgia	26/26	TH, H, K, CS, P
B.anthracis BA1004	(2000) [pXO1+/pXO2+]	USA, Texas	26/26	TH, H, K, CS, P
B.anthracis CZC5	Animal, Hippopotamus tissues (2011) [from hippopotamuses that had died during an anthrax outbreak]	Zambia	26/26	TH, H, K, CS, P
B.anthracis K3	Human [pXO1+/pXO2+]	South Africa	26/26	TH, H, K, CS, P
B.anthracis A16	[pXO1+/pXO2+]		26/26	TH, H, K, CS, P
B.anthracis K4516	Animal, cattle (Bovine) (1939) [pXO1+/pXO2+]	USA, Maryland	26/26	TH, H, K, CS, P
B.anthracis A1144	[pXO1+/pXO2+; shows mucoid colony morphology]	Argentina	26/26	TH, H, K, CS, P
B.anthracis A0021	Animal, Hippopotamus (1997)	Zambia, Western Province	26/26	TH, H, K, CS, P
B.anthracis 2000032967			26/26	TH, H, K, CS, P
B.anthracis A1075	Animal, cattle [pXO1+/pXO2+]	Chile, Lago Ranco-Valdivia Agricola Quillin Va. Region	26/26	TH, H, K, CS, P
B.anthracis K2883	Human (1997)	India	26/26	TH, H, K, CS, P
B.anthracis K2129	(1997)	China, Changping	26/26	TH, H, K, CS, P
B.anthracis BA1035	Human, Clinical [pXO1+/pXO2+]	South Africa	26/26	TH, H, K, CS, P
B.anthracis Ames	[pXO1-/pXO2-; Ames strain cured of the pXO1 and pXO2 plasmids at UK Defence Science and Technology Laboratory]	UK, England, Porton Down	26/26	TH, H, K, CS, P
B.anthracis HYU01	Soil (2009) [pXO1+/pXO2+]	Korea (South), Changnyeong	26/26	TH, H, K, CS, P
B.anthracis 52-G	Animal, cattle (bovine) (2009) [pXO1+/pXO2+]	Georgia, Tbilisi	26/26	TH, H, K, CS, P
B.anthracis PR09-4		USA	26/26	TH, H, K, CS, P
B.anthracis Pasteur	Animal, cat [pXO1-/pXO2+]		26/26	TH, H, K, CS, P
B.anthracis Kafkas-149	Soil (2012)	Turkey, Selim	26/26	TH, H, K, CS, P
B.anthracis 2002013094	Soil (1956) [pXO1+/pXO2+; two complete genomes sequenced for this strain with identical MLST sequences]	USA	26/26	TH, H, K, CS, P
B.anthracis Sterne		USA	26/26	TH, H, K, CS, P
B.anthracis 721			26/26	TH, H, K, CS, P
B.anthracis K3974	(1995)	Slovakia	26/26	TH, H, K, CS, P
B.anthracis 2000031039	Animal, cattle (1957)		26/26	TH, H, K, CS, P
B.anthracis A16R	[attenuated variant of strain A16; pXO1+/pXO2-]		26/26	TH, H, K, CS, P
B.anthracis ANSES101			26/26	TH, H, K, CS, P
B.anthracis A1055	[belongs to the divergent C branch; pXO1-/pXO2+]	USA, Louisiana	26/26	TH, H, K, CS, P
B.anthracis ANSES118			26/26	TH, H, K, CS, P
B.anthracis Tangail-1	Soil (2012)	Bangladesh, Tangail	26/26	TH, H, K, CS, P
B.anthracis P417			26/26	TH, H, K, CS, P
B.anthracis Vollum1B	Human (1951) [weaponized Vollum substrain used in American warheads during the 1960-s; pXO1+/pXO2+]	USA	26/26	TH, H, K, CS, P
B.anthracis A0389#2	[pXO1+/pXO2+; two complete genomes sequenced for this strain with different MLST sequences; strain sequenced by Biosurveillance, MRIGlobal, Palm Bay, Florida, USA; sequences conflicting with isolate A0389#1]	Indonesia, West Java, Bekasi	26/26	TH, H, K, CS, P
B.anthracis 663			26/26	TH, H, K, CS, P
B.anthracis 2000031027	Animal, cattle (1957)	USA, Oklahoma	26/26	TH, H, K, CS, P
B.anthracis 2000032951	Human (1958)		26/26	TH, H, K, CS, P
B.anthracis ANSES32			26/26	TH, H, K, CS, P
B.anthracis Ba-8785/92-Geo	Human, Patient ulcer (1992)	Georgia	26/26	TH, H, K, CS, P
B.anthracis K1	Soil (2014)	Namibia, Etosha National Park	26/26	TH, H, K, CS, P
B.anthracis BFV	[pXO1+/pXO2+]		26/26	TH, H, K, CS, P
B.anthracis SVA11	Animal, cattle (2011) [from an outbreak in cattle that occurred in a Swedish nature reserve; pXO1+/pXO2+]	Sweden	26/26	TH, H, K, CS, P
B.anthracis 55-VNIIVViM	Other, Commercial vial (2014)	Georgia, Tbilisi	26/26	TH, H, K, CS, P
B.anthracis WestNA	Animal, Bison [pXO1+/pXO2+]	Canada	26/26	TH, H, K, CS, P
B.anthracis ANSES08-8_20	Animal, cattle (bovine) (2008)	France, Doubs	26/26	TH, H, K, CS, P
B.anthracis A.Br.003	Human, child cutaneous anthrax	UK, Scotland, Dundee	26/26	TH, H, K, CS, P
B.anthracis PR10-4		USA	26/26	TH, H, K, CS, P
B.anthracis 3154	Soil	Bulgaria	26/26	TH, H, K, CS, P
B.anthracis 9080-G	Soil (1998) [pXO1+/pXO2+]	Georgia, Gardabani	26/26	TH, H, K, CS, P
B.anthracis Vollum	[this strain is used in research studies and is found in the UK, Spain, and Zimbabwe; pXO1+/pXO2+; two complete genomes sequenced for this strain with identical MLST sequences]		26/26	TH, H, K, CS, P
B.anthracis H9401	Human, cutaneous anthrax patient [pXO1+/pXO2+]	Korea (South)	26/26	TH, H, K, CS, P
B.anthracis Parent2		USA	26/26	TH, H, K, CS, P
B.anthracis Kafkas-60	Animal, Sheep (2006)	Turkey, Arpacay	26/26	TH, H, K, CS, P
B.anthracis 95014	[pXO1+/pXO2-]		26/26	TH, H, K, CS, P
B.anthracis Kafkas-68	Animal, Cattle (2007)	Turkey, Kars	26/26	TH, H, K, CS, P
B.anthracis Canadian_bison	Animal, Bison [pXO1+/pXO2+]	Canada	26/26	TH, H, K, CS, P
B.anthracis Shikan-NIID	Animal, horse (1928) [pXO1+/pXO2+; two complete genomes sequenced for this strain with identical MLST sequences]	Japan, Tokyo	26/26	TH, H, K, CS, P
B.anthracis Ba-1897/12-Geo	Food, Beef (2012)	Georgia	26/26	TH, H, K, CS, P
B.anthracis A0157	Animal, Pig (1996) [derived from strain ATCC4728; pXO1-/pXO2+]	USA	26/26	TH, H, K, CS, P
B.anthracis Parent1		USA	26/26	TH, H, K, CS, P
B.anthracis 781			26/26	TH, H, K, CS, P
B.anthracis A0465	Animal, cattle (Cow), spleen (1997) [two complete genomes sequenced for this strain with identical MLST sequences; pXO1+/pXO2+]	France, Pyrenees mountains	26/26	TH, H, K, CS, P
B.anthracis 500			26/26	TH, H, K, CS, P
B.anthracis PR07		USA	26/26	TH, H, K, CS, P
B.anthracis K8215	[pXO1+/pXO2+]	Argentina	26/26	TH, H, K, CS, P
B.anthracis PR02		USA	26/26	TH, H, K, CS, P
B.anthracis Kafkas-86	Animal, Cattle (2006)	Turkey, Kars	26/26	TH, H, K, CS, P
B.anthracis 2000031765			26/26	TH, H, K, CS, P
B.anthracis PR08		USA	26/26	TH, H, K, CS, P
B.anthracis ANSES92			26/26	TH, H, K, CS, P
B.anthracis 4599	Human, Scottish heroin user (2009)	UK, Scotland, Glasgow	26/26	TH, H, K, CS, P
B.anthracis Ba-9108/08-Geo	Human, Patient ulcer (2008)	Georgia	26/26	TH, H, K, CS, P
B.anthracis 44-NIAH	[pXO1+/pXO2+; two complete genomes sequenced for this strain with identical MLST sequences]		26/26	TH, H, K, CS, P
B.anthracis K0021	Animal, Sheep (1995)	Italy	26/26	TH, H, K, CS, P
B.anthracis PR01		USA	26/26	TH, H, K, CS, P
B.anthracis Pollino	Animal, cattle (bovine) carcass (2014) [from a bovine anthrax-burial site; pXO1+/pXO2+]	Italy, Pollino National Park, Basilicata	26/26	TH, H, K, CS, P
B.anthracis K1285	[pXO1+/pXO2+]	Namibia	26/26	TH, H, K, CS, P
B.anthracis CDC684	[originally labeled B.megaterium; shows significant attenuation of virulence; pXO1+/pXO2+]		26/26	TH, H, K, CS, P
B.anthracis AmesAnc	Animal, cattle (Cow) (1981) [this strain is the progenitor of all the Ames strains used as research tools in laboratories around the world; pXO1+/pXO2+]	USA, Texas, Sarita	26/26	TH, H, K, CS, P
B.anthracis Ba-8782/92-Geo	Animal, Sheepskin (1992)	Georgia	26/26	TH, H, K, CS, P
B.anthracis Stendal	Animal, cattle (bovine) (Bos bovis) (2012)	Germany, Saxony-Anhalt	26/26	TH, H, K, CS, P
B.anthracis 2000031075	Animal, cattle	South Africa	26/26	TH, H, K, CS, P
B.anthracis 2000031038	(1957)		26/26	TH, H, K, CS, P
B.anthracis Ba-8884/94-Geo	Human, Patient ulcer (1994)	Georgia	26/26	TH, H, K, CS, P
B.anthracis ANSES122			26/26	TH, H, K, CS, P
B.anthracis BF1	Animal, cattle (cow) carcass (2009) [from a cow that had succumbed to anthrax; pXO1+/pXO2+]	Germany, Bavaria	26/26	TH, H, K, CS, P
B.anthracis 2000032968			26/26	TH, H, K, CS, P
B.anthracis ANSES86			26/26	TH, H, K, CS, P
B.anthracis Sen3		Senegal	26/26	TH, H, K, CS, P
B.anthracis ANSES89			26/26	TH, H, K, CS, P
B.anthracis ANSES88			26/26	TH, H, K, CS, P
B.anthracis 2000032819			26/26	TH, H, K, CS, P
B.anthracis PR06		USA	26/26	TH, H, K, CS, P
B.anthracis Ba-9065/08-Geo	Human, Patient ulcer (2008)	Georgia	26/26	TH, H, K, CS, P
B.anthracis Carbosap	[attenuated, toxigenic, capsulated strain; shows significant attenuation of virulence; used in Italy as a live spore vaccine for cattle and sheep; pXO1+/pXO2+; two complete genomes sequenced for this strain with identical MLST sequences between]	Somalia, Asmara, Institute Vacci nogeno or Italy, Rome	26/26	TH, H, K, CS, P
B.anthracis 2000032979		USA, New Jersey	26/26	TH, H, K, CS, P
B.anthracis TI	[Soviet Union livestock vaccine strain; pXO1+/pXO2+]	USSR	26/26	TH, H, K, CS, P
B.anthracis 2000032832			26/26	TH, H, K, CS, P
B.anthracis K2	Soil (2014)	Namibia, Etosha National Park	26/26	TH, H, K, CS, P
B.anthracis K1129	Animal, goat hair (1995)	Pakistan	26/26	TH, H, K, CS, P
B.anthracis Turkey32	Human, skin (1991) [pXO1+/pXO2+]	Turkey, Yozgat	26/26	TH, H, K, CS, P
B.anthracis Kafkas-215	Soil (2014)	Turkey, Selim	26/26	TH, H, K, CS, P
B.anthracis Ba-8776/92-Geo	Human, Patient ulcer (1992)	Georgia	26/26	TH, H, K, CS, P
B.anthracis Kafkas-100	Soil (2009)	Turkey, Digor	26/26	TH, H, K, CS, P
B.anthracis FDAARGOS341	Other, Colorado Serum Co., Anthrax Spore Vaccine (2015)		26/26	TH, H, K, CS, P
B.anthracis Sterne34F2	Animal, cattle (cow) (1937) [Animal vaccine strain; pXO1+/pXO2-; two complete genomes sequenced for this strain with identical MLST sequences]	South Africa	26/26	TH, H, K, CS, P
B.anthracis A0463	Animal, sheep (1978) [reported as pXO1+/pXO2+ but no pXO2 sequence in genome]	Pakistan	26/26	TH, H, K, CS, P
B.anthracis PR05		USA	26/26	TH, H, K, CS, P
B.anthracis DS201579	Animal, Blue Wildebeest (Connochaetes taurinus) (2015)	South Africa, Kruger National Park, Pafuri	26/26	TH, H, K, CS, P
B.anthracis P482			26/26	TH, H, K, CS, P
B.anthracis Sen2Col2		Senegal	26/26	TH, H, K, CS, P
B.anthracis 2000031008		USA, Alabama	26/26	TH, H, K, CS, P
B.anthracis A1039	Animal, cattle (1999)	Bolivia, Santa Cruz	26/26	TH, H, K, CS, P
B.anthracis deltaSterne	[pXO1-/pXO2-]		26/26	TH, H, K, CS, P
B.anthracis CNEVA	Human [pXO1+/pXO2+]	France (Southern)	26/26	TH, H, K, CS, P
B.anthracis ANSES94			26/26	TH, H, K, CS, P
B.anthracis 2000031031	Human (1957)	USA, Massachusetts	26/26	TH, H, K, CS, P
B.anthracis Tyrol4675	Animal, cattle (Cow) (1988)	Austria, Tyrol	26/26	TH, H, K, CS, P
B.anthracis K4834	Animal, cattle (Bovine) (1997)	Australia	26/26	TH, H, K, CS, P
B.anthracis STI-1	[vaccine strain; pXO1+/pXO2-]	Russia	26/26	TH, H, K, CS, P
B.anthracis ANSES00-82	Animal, cattle (bovine) (2000)	France, Savoie	26/26	TH, H, K, CS, P
B.anthracis Australia94	Animal, cattle (Bovine) (1994) [pXO1+/pXO2+]	Australia, Victoria Province	26/26	TH, H, K, CS, P
B.anthracis 52-40-NIAH	Animal, horse (1940) [pXO1+/pXO2+; two complete genomes sequenced for this strain with identical MLST sequences]	China	26/26	TH, H, K, CS, P
B.anthracis A0248	Human (1968) [pXO1+/pXO2+]	USA, Ohio	26/26	TH, H, K, CS, P
B.anthracis 2000031709	(1956)	USA, Carolinas	26/26	TH, H, K, CS, P
B.anthracis 14RA5914	Animal, cattle (bovine) (Bos primigenius taurus) spleen (2014)	Germany, Dobichau	26/26	TH, H, K, CS, P
B.anthracis 2000031023	Animal, cattle (1957)		26/26	TH, H, K, CS, P
B.anthracis Florida	Human [from bioterror mailing attacks in 2001; pXO1+/pXO2+]	USA, Florida	26/26	TH, H, K, CS, P
B.anthracis ATCC14185	Animal, cattle (bovine) (1951) [United States Human Vaccine strain; pXO1+/pXO2-; two complete genomes sequenced for this strain with identical MLST sequences]	USA, Florida	26/26	TH, H, K, CS, P
B.anthracis PR09-1		USA	26/26	TH, H, K, CS, P
B.anthracis 2000031006	(1956)	USA, New Mexico	26/26	TH, H, K, CS, P
B.anthracis SPV842_15	Animal, cattle (bovine) (Bos taurus) liver [from bovine aborted fetus] (2015)	Brazil	26/26	TH, H, K, CS, P
B.anthracis STI1	Other, laboratory strain (1970) [vaccine strain; pXO1+/pXO2-]	Russia, Saratov	26/26	TH, H, K, CS, P
B.anthracis Kafkas-78	Animal, Cattle (2008)	Turkey, Kars	26/26	TH, H, K, CS, P
B.anthracis Smith1013	[pXO1-/pXO2+]		26/26	TH, H, K, CS, P
B.anthracis Gmb1		Gambia	26/26	TH, H, K, CS, P
B.anthracis A0389#1	[pXO1+/pXO2+; two complete genomes sequenced for this strain with different MLST sequences; strain sequenced by Los Alamos National Laboratory, Los Alamos, New Mexico, USA; sequences conflicting with isolate A0389#2]	Indonesia, West Java, Bekasi	25/25	H, K, CS, gmk, ilvd, pta, purh, pyca2, tpi
B.anthracis A0174	Animal, cattle (bovine) (1974) [pXO1+/pXO2-]	Canada	25/25	H, K, CS, gmk, ilvd, pta, purh, pyca2, tpi
B.anthracis Zimbabwe89		Zimbabwe	25/25	TH, H, K, P, dinb, gdpd, purf, yhfl
B.anthracis BrazilianVaccinal	Animal, cattle (bovine) (Bos taurus) Vaccine strain (2016)	Brazil	25/25	TH, H, K, CS, gmk, purh, tpi
B.anthracis OhioACB	Animal, pig [pXO1+/pXO2+]	USA, Ohio	25/26	TH, K, CS, P, ftsa, recf, succ
B.anthracis Larissa	Animal, sheep (Ovis) (2012)	Greece	25/26	TH, H, K, P, clpc, gdpd, purf, yhfl
B.anthracis ANSES99-100	Animal, cattle (bovine) (1999)	France, Nievre	25/26	TH, H, K, CS, ilvd, purh, tpi
B.anthracis Ba-1802/12-Geo	Human, Patient ulcer (2012)	Georgia	25/26	H, K, P, clpc, dinb, gdpd, purf, yhfl
B.anthracis 8903-G	Soil (1997) [pXO1+/pXO2+]	Georgia, Gardabani	25/26	TH, K, CS, P, ftsa, pyre, recf
B.anthracis 2000032879	(1962)		25/26	TH, H, K, CS, gmk, ilvd, tpi
B.anthracis 2000031052	Animal, cattle (1956)	USA, Wyoming	25/26	TH, K, CS, P, ftsa, recf, succ
B.anthracis SK-102	Other, Wool from Pakistan (1976) [pXO1+/pXO2+]	USA, New Jersey	25/26	TH, H, CS, P, gyrb, mbl, mdh, muts, pyca1
B.anthracis ANSES90			25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.anthracis A0193	Animal, cattle (cow) (1996) [pXO1+/pXO2+]	USA, South Dakota	24/24	K, CS, ccpa, ftsa, glpt, gmk, ilvd, pta, purh, pyca2, pyre, recf, succ, tpi
B.anthracis A0488	Animal, cattle (cow) (1935) [pXO1+/pXO2+]	UK, England, Oxfordshire	24/24	K, CS, ccpa, ftsa, glpt, gmk, ilvd, pta, purh, pyca2, pyre, recf, succ, tpi
B.anthracis UR-1	Human, blood (2012) [from a german heroin user; fatal case of injectional anthrax; pXO1+/pXO2+]	Germany, Bavaria	24/24	TH, K, P, clpc, dinb, gdpd, pyre, recf, succ, yhfl
B.anthracis 2000032892			24/26	H, K, clpc, dinb, gdpd, glpf, gmk, ilvd, pta, purf, purh, pyca2, yhfl
B.anthracis Han	Animal, dead cow blood (2013) [from the site of an anthrax outbreak]	China, Liaoning Province	23/23	K, CS, adk, ccpa, glpt, gmk, ilvd, pta, purh, pyca2, pyre, recf, tpi
B.anthracis A0442	Animal, Kudu (1975) [pXO1+/pXO2+]	South Africa, Kruger National Park	23/23	K, CS, ccpa, ftsa, glpt, gmk, ilvd, pta, purh, pyca2, pyre, recf, tpi
B.anthracis Cvac02	Animal, dead cow blood (2013) [from the site of an anthrax outbreak]	China, Liaoning Province	23/23	TH, K, P, clpc, dinb, pyre, recf, succ, yhfl
B.anthracis 527	[Federal Research Centre for Virus Diseases of Animals (BFAV); pXO1+/pXO2+]	Germany, Jena	14/14	H, P
B.anthracis A15	[University of Hohenheim; pXO1+/pXO2-]	Germany, Hohenheim	14/14	H, P
B.anthracis 19/57	[Federal Research Centre for Virus Diseases of Animals (BFAV); pXO1+/pXO2+]	Germany, Jena	14/14	H, P
B.anthracis 5261	[Federal Research Centre for Virus Diseases of Animals (BFAV); pXO1-/pXO2+]	Germany, Jena	14/14	H, P
B.anthracis 4463	[Federal Research Centre for Virus Diseases of Animals (BFAV); pXO1+/pXO2+]	Germany, Jena	14/14	H, P
B.anthracis Mali	[University of Goettingen; pXO1+/pXO2-]	Germany, Goettingen	14/14	H, P
B.anthracis 13/38	[Federal Research Centre for Virus Diseases of Animals (BFAV); pXO1+/pXO2+]	Germany, Jena	14/14	H, P
B.anthracis 53/59	[Federal Research Centre for Virus Diseases of Animals (BFAV); pXO1+/pXO2+]	Germany, Jena	14/14	H, P
B.anthracis B11/38	[Federal Research Centre for Virus Diseases of Animals (BFAV); pXO1+/pXO2+]	Germany, Jena	14/14	H, P
B.anthracis UDIII-7	[Federal Research Centre for Virus Diseases of Animals (BFAV); pXO1+/pXO2+]	Germany, Jena	14/14	H, P
B.anthracis 2157	[University of Goettingen; pXO1+/pXO2+]	Germany, Goettingen	14/14	H, P
B.anthracis A58	[University of Hohenheim; pXO1-/pXO2-]	Germany, Hohenheim	14/14	H, P
B.anthracis B22/39	[Federal Research Centre for Virus Diseases of Animals (BFAV); pXO1+/pXO2+]	Germany, Jena	14/14	H, P
B.anthracis 19/37	[Federal Research Centre for Virus Diseases of Animals (BFAV); pXO1+/pXO2+]	Germany, Jena	14/14	H, P
B.anthracis Behring	[Federal Research Centre for Virus Diseases of Animals (BFAV); pXO1-/pXO2+]	Germany, Jena	14/14	H, P
B.anthracis BC	Animal, cattle (cow) [pXO1-/pXO2+]	Korea (South), Bongcheon	13/13	K, P
B.anthracis CAU-1	Human, blood (1994) [septicaemia anthrax; pXO1+/pXO2+; pXO1+/pXO2+]	Korea (South), Kyungjoo City	13/13	K, P
B.anthracis Pasteur2	[pXO1+/pXO2- or pXO1-/pXO2-]		13/13	K, P
B.anthracis B19/39	[Federal Research Centre for Virus Diseases of Animals (BFAV); pXO1+/pXO2+]	Germany, Jena	13/13	P, adk, ccpa, ftsa, glpt, recf, succ
B.anthracis ATCC14186	[pXO1+/pXO2-]		13/13	K, P
B.anthracis 7700	[pXO1-/pXO2-]	Africa	11/11	TH, H
B.anthracis NVH93	Animal, cattle (Bovine) (1993)	Norway	11/11	TH, H
B.anthracis NVH87	Animal, cattle (Bovine) (1987)	Norway	11/11	TH, H
B.anthracis EPI674	Human, muscle, Heroin abuser	Norway	11/11	TH, H
B.anthracis A0462#1	Animal, Guinea pig (1988) [Ames strain reisolated from guinea pig; pXO1+/pXO2+]	UK	7/7	P
B.anthracis 2000032882	[pXO1-/pXO2+]		7/7	P
B.anthracis 2000031756	[pXO1-/pXO2-]		7/7	P
B.anthracis CN2	Soil (2000) [pXO1+/pXO2+]	Korea (South), Changnyeong	7/7	P
B.anthracis CAU-3	Human, blood (1994) [septicaemia anthrax; pXO1+/pXO2+]	Korea (South), Kyungjoo City	7/7	P
B.anthracis ET-51B	(2000)	Namibia, Etosha National Park	7/7	P
B.anthracis B04_025	Animal, cattle (cow)	France	7/7	TH
B.anthracis CAU-2	Human, blood (1994) [septicaemia anthrax; pXO1+/pXO2+]	Korea (South), Kyungjoo City	7/7	P
B.anthracis A0034	Animal, cattle (bovine) (1990) [cattle anthrax; pXO1+/pXO2+]	China, Changping	7/7	P
B.anthracis Ames_BA1004	(2000)	USA	7/7	P
B.anthracis ET-79B	(2000)	Namibia, Etosha National Park	7/7	P
B.anthracis B06_040	Soil	Italy	7/7	TH
B.anthracis CN1	Human, blood (2000) [septicaemia anthrax; pXO1+/pXO2+]	Korea (South), Changnyeong	7/7	P
B.anthracis A0102	Animal, pig (1944) [pXO1+/pXO2+]	Mozambique, Maputo	7/7	P
B.anthracis B06_038	Soil	Italy	7/7	TH
B.anthracis A73	[University of Hohenheim; pXO1-/pXO2+]	Germany, Hohenheim	7/7	H
B.anthracis A0062	Animal, cattle (bovine) (1962) [pXO1+/pXO2+ or pXO1-/pXO2+]	Poland	7/7	P
B.anthracis ET-76B	(2000)	Namibia, Etosha National Park	7/7	P
B.anthracis ANT1	Human	Japan	7/7	P
B.anthracis 2002013066	[pXO1-/pXO2-]		7/7	P
B.anthracis A0462#2	Animal, dead cow (1981) [cattle]	USA	7/7	P
B.anthracis 2002721544	[pXO1+/pXO2-]		7/7	P
B.anthracis 2000031021	Soil	USA	7/7	P
B.anthracis HS	Animal, cattle (Cow)	Korea	6/6	K
B.anthracis GJ-2	Animal, cattle (Cow)	Korea	6/6	K
B.anthracis CN	Animal, cattle (Cow)	Korea	6/6	K

19 isolate(s) sharing MLST alleles in supercluster 11

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group MCCC1A00460	Other, sediments (2005)	Pacific Ocean	7/7	P
B.c_group MCCC1A06361	Other, sediments (2010)	Gulf of Mexico	7/7	P
B.c_group MCCC1A00394	Other, sediments (2005)	Pacific Ocean	7/7	P
B.c_group MCCC1A00239	Other, sediments (2005)	Pacific Ocean	7/7	P
B.c_group MCCC1A00447	Other, sediments (2005)	Pacific Ocean	7/7	P
B.c_group MCCC1A00262	Other, sediments (2005)	Pacific Ocean	7/7	P
B.c_group MCCC1A06360	Other, sediments (2010)	Gulf of Mexico	7/7	P
B.c_group MCCC1A00267	Other, sediments (2005)	Pacific Ocean	7/7	P
B.c_group MCCC1A00235	Other, sediments (2005)	Pacific Ocean	7/7	P
B.c_group MCCC1A00266	Other, sediments (2005)	Pacific Ocean	7/7	P
B.c_group MCCC1A00268	Other, sediments (2005)	Pacific Ocean	7/7	P
B.c_group MCCC1A00265	Other, sediments (2005)	Pacific Ocean	7/7	P
B.c_group MCCC1A00431	Other, sediments (2005)	Pacific Ocean	7/7	P
B.c_group MCCC1A00395	Other, sediments (2005)	Pacific Ocean	7/7	P
B.c_group MCCC1A06359	Other, sediments (2010)	Gulf of Mexico	7/7	P
B.c_group MCCC1A00274	Other, sediments (2005)	Pacific Ocean	7/7	P
B.cereus BGSC6A88	Human, wound infection (2004) [sequences conflicting with isolate 179989.X]	UK, Scotland	7/7	P
B.c_group MCCC1A00430	Other, sediments (2005)	Pacific Ocean	7/7	P
B.c_group MCCC1A00419	Other, sediments (2005)	Pacific Ocean	7/7	P

6 isolate(s) sharing MLST alleles in supercluster 12

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS080002	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS028292	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS064200	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS065496	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS039661	Soil (2014)	USA, New York	24/26	H, CS, glpf, gmk, gyrb, ilvd, mdh, muts, purh, pyca1, pyca2, rpob, tpi
B.cereus AFS075781	Plant, Soybean core (2014)	USA, Iowa	24/26	TH, CS, P, ftsa, gyrb, mdh, muts, pyca1, recf, rpob, succ

41 isolate(s) sharing MLST alleles in supercluster 13

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 822BCER	Human	USA, Washington	26/26	TH, H, K, CS, P
B.cereus B4118	Food (2013)	Netherlands	26/26	TH, H, K, CS, P
B.cereus AFS030229	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus 823BTHU	Human	USA, Washington	26/26	TH, H, K, CS, P
B.cereus FSLW8-0268	Other, Evaporator (last effect) - Liquid (WIP) (2012)	USA, New York	26/26	TH, H, K, CS, P
B.cereus DSM626	(1966)	USA, Illinois	26/26	TH, H, K, CS, P
B.cereus SJ-S21	Human	USA, Tennessee, Memphis	26/26	TH, H, K, CS, P
B.cereus 820BCER	Human	USA, Washington	26/26	TH, H, K, CS, P
B.cereus MOD1Bc77	Plant, Sesame Seed (2015)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus N31	Other, Sediments (2002)	China, South China Sea	26/26	TH, H, K, CS, P
B.cereus SJ-S17	Human	USA, Tennessee, Memphis	25/26	TH, H, K, P, clpc, dinb, purf, yhfl
B.cereus FORC005	Food, chicken cutlett (2014)	Korea (South), Inchon	25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.thuringiensis GOE3#1	Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)	Germany, Goettingen	25/26	H, K, CS, gmk, ilvd, pta, purh, pyca2, tpi
B.cereus A50	(2014)	Australia	24/25	TH, H, CS, gmk, gyrb, mdh, muts, purh, pyca1, rpob, tpi
B.cereus #17	Animal, Mouse microbiota		24/26	TH, H, P, clpc, dinb, gdpd, gyrb, mbl, mdh, purf, pyca1, rpob
B.cereus AFS009840	Plant, core (2014)	USA, North Carolina	24/26	TH, H, P, clpc, dinb, gdpd, gyrb, mdh, muts, purf, pyca1, rpob
B.cereus INRAA3	Food, starch (1998) (1998)	France, Normandie	24/26	H, K, clpc, dinb, glpf, gmk, ilvd, panc, pta, purf, purh, tpi, yhfl
B.cereus 29	Animal, crab (Callinectes sp.) gastrointestinal tract (2016)	Brazil, Ceara, Pacoti River, Fortaleza	24/26	H, K, CS, glpf, gmk, ilvd, pta, tpi
B.cereus FORC048	Plant, Sesame leaf (2014)	Korea (South), Gwangju	24/26	TH, K, P, clpc, dinb, ftsa, gdpd, purf, pyre, recf
B.cereus AFS099306	Plant, core (2014)	USA, North Carolina	23/26	H, K, P, clpc, dinb, purf
B.cereus AFS049840	Plant, Wheat plant (2014)	USA, North Carolina	23/26	TH, H, P, dinb, gyrb, mdh, muts, purf, pyca1, rpob, yhfl
B.cereus AFS033081	Animal, Insect, beetle (2013)	USA, North Carolina	23/26	TH, H, clpc, dinb, gdpd, gmk, gyrb, ilvd, mdh, muts, purf, pyca1, rpob, tpi
B.cereus MIT0214	Other, Deep subsurface (2010) [isolated through enrichment of samples from geologic sequestration sites in pressurized bioreactors containing a supercritical CO2 headspace]	USA, Texas	23/26	H, K, clpc, dinb, gdpd, gmk, ilvd, panc, purf, purh, pyca2, tpi
B.cereus m1550	Food, uncooked chicken (1987)	Brazil	23/26	TH, H, K, P, dinb, yhfl
B.cereus AFS004498	(2014)	USA, North Carolina	22/26	TH, H, clpc, dinb, gdpd, gmk, gyrb, ilvd, mdh, purf, purh, pyca1, rpob
B.cereus 25#1	Animal, crab (Ucides sp.) gastrointestinal tract (2016)	Brazil, Ceara, Pacoti River, Fortaleza	21/21	K, adk, ccpa, clpc, dinb, gdpd, glpf, glpt, gmk, ilvd, panc, pta, pyre, recf, succ, tpi
B.cereus D12_2	Food, Korean fermented food (2016)	Korea (South)	21/26	K, adk, ccpa, clpc, dinb, ftsa, gdpd, glpt, gmk, pta, purf, pyca2, recf, succ, tpi, yhfl
B.cereus AFS092659	Plant, Corn core (2014)	USA, North Carolina	20/26	K, adk, ccpa, clpc, dinb, ftsa, glpt, gmk, purf, purh, pyca2, recf, succ, tpi, yhfl
B.cereus AFS082409	Plant, core (2014)	USA, North Carolina	19/26	H, clpc, dinb, gdpd, gmk, gyrb, mbl, mdh, pta, pyca1, pyca2, rpob, tpi
B.cereus B4264	Human, blood and pleural fluid (1969) [human fatal pneumonia]		18/26	K, adk, ccpa, dinb, ftsa, glpt, gmk, pta, purf, purh, pyca2, succ, tpi
B.cereus VD184			18/26	H, gdpd, glpf, gyrb, ilvd, muts, pta, purf, pyca1, pyca2, rpob, yhfl
B.cereus BGSC6A1	[Wild type isolate]		13/13	CS, P
B.c_group ATCC11778	[B.cereus or B.mycoides]	USA, New York	8/13	P, mbl
B.c_group K14_4228	(2014)	Korea (South)	7/7	P
B.cereus K15-3521	Human, faeces/stools (2015)	Korea (South)	7/7	P
B.cereus BGSC6A2	[Wild type isolate]		7/7	P
B.cereus S6552	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.thuringiensis S86			7/7	P
B.thuringiensis BGSC4E6	(1965) [sequences conflicting with isolate T04002]	Canada	7/7	P
B.c_group MCCC1A01404	Other, sediments (2006)	South China Sea	7/7	P
B.c_group DVM_32	Soil	Japan	7/7	P

10 isolate(s) sharing MLST alleles in supercluster 14

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis IBL3794	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3791	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3682	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3683	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3681	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3793	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3792	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3795	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3565	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3680	Soil (2009)	USA, Maryland	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 15

Strain	Source	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis IMSNU12090	[derived from strain KCTC1509 cured of the insecticidal crystal toxin]	6/6	K
B.thuringiensis IMSNU11043		6/6	K
B.thuringiensis IMSNU10051	Animal, diseased insect larvae	6/6	K

41 isolate(s) sharing MLST alleles in supercluster 16

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus MOD1Bc199	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc181	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc194	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc197	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc62	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc193	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc59	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc196	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc200	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc186	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc191	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus Q1	Other, deep-subsurface oil reservoir	China (Northeastern), Daqing oil field	26/26	TH, H, K, CS, P
B.cereus MOD1Bc188	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc178	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc61	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc202	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc192	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc185	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc65	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc180	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc179	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc60	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc183	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc198	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc56	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc63	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc189	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc58	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc204	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc182	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc195	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.c_group AH826	Human, periodontitis (1996)	Norway, Rogaland	11/11	TH, H
B.c_group AH819	Human, periodontitis (1995)	Norway, Oslo	11/11	TH, H
B.c_group AH825	Human, periodontitis (1996)	Norway, Akershus	11/11	TH, H
B.c_group AH829	Human, periodontitis (1996)	Norway, Akershus	11/11	TH, H
B.c_group AH824	Human, periodontitis (1996)	Norway, Akershus	11/11	TH, H
B.c_group AH828	Human, periodontitis (1996)	Norway, Oslo	11/11	TH, H
B.c_group AH827	Human, periodontitis (1996)	Norway, Hedmark	11/11	TH, H
B.c_group AH823	Human, periodontitis (1996)	Norway, Oslo	11/11	TH, H
B.c_group AH831	Human, periodontitis (1996)	Norway, Oslo	10/11	H, glpf, panc, pta
B.c_group KW64	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P

10 isolate(s) sharing MLST alleles in supercluster 17

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.pseudomycoides AFS017092	Soil (2014)	USA, New York	25/25	K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.pseudomycoides AFS060037	Soil (2014)	USA, New York	25/25	K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.mycoides SB4	Food (2016)	Netherlands	25/25	K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.pseudomycoides AFS018975	Soil (2014)	USA, New York	25/25	K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.c_group VDM021	Soil	Greenland	24/25	K, CS, P, adk, ccpa, ftsa, pyre, succ
B.pseudomycoides FSLK6-0042	Dairy products, raw milk (2012)	USA, New York	24/25	K, P, adk, ccpa, clpc, dinb, ftsa, gdpd, purf, pyre, recf, succ, yhfl
B.c_group VD136	Soil	UK, Scotland	23/23	K, adk, ccpa, clpc, dinb, ftsa, gdpd, glpf, gmk, ilvd, panc, pta, pyca2, pyre, recf, succ, tpi, yhfl
B.c_group VDM006	Soil	Spain	21/25	K, adk, ccpa, clpc, dinb, ftsa, gdpd, glpf, gmk, ilvd, panc, pta, pyca2, pyre, succ, tpi
B.c_group FSLH8-0481	Dairy products, milk products (2012)	USA	7/7	P
B.c_group FSLK6-1142	Other, environmental (2006)	USA	7/7	P

45 isolate(s) sharing MLST alleles in supercluster 18

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.mycoides WSBC10969	Dairy products, raw milk (2014)	Germany	26/26	TH, H, K, CS, P
B.mycoides S3E15	Soil (2016)	Netherlands	26/26	TH, H, K, CS, P
B.mycoides GM5LP	Plant, English ray-grass (Lolium perenne)	Germany	26/26	TH, H, K, CS, P
B.mycoides GM6LP	Plant, English ray-grass (Lolium perenne)	Germany	26/26	TH, H, K, CS, P
B.weihenstephanensis BtB2-4	Soil, forest soil mud [emetic toxin/cereulide producer]	Belgium	26/26	TH, H, K, CS, P
B.mycoides MOD1Bc228	Food, food product (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.mycoides M2E15	Food, Potato (2014)	Netherlands	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4BQ1	Soil	Spain	26/26	TH, H, K, CS, P
B.weihenstephanensis CER057	Food, parsley [emetic toxin/cereulide producer]	Belgium	26/26	TH, H, K, CS, P
B.c_group VDM019	Soil	Greenland	26/26	TH, H, K, CS, P
B.mycoides FSLE2-0214	Food, finished RTE dairy food product (2014)	USA	25/26	K, CS, P, adk, ftsa, glpt, pyre, recf, succ
B.weihenstephanensis CER074	Dairy products, raw milk [emetic toxin/cereulide producer]	Belgium	25/26	TH, K, CS, P, ftsa, pyre, recf
B.mycoides EC18	Soil (2016)	Netherlands	25/26	TH, K, CS, P, ftsa, pyre, succ
B.mycoides SB8	Soil (2016)	Netherlands	25/26	TH, H, CS, P, gyrb, mbl, mdh, muts, pyca1
B.mycoides S2E19	Soil (2016)	Netherlands	24/26	H, K, P, clpc, dinb, gdpd, purf
B.c_group VDM022	Soil	Greenland	24/26	CS, P, adk, ftsa, glpt, gyrb, mdh, muts, pyca1, pyre, recf, rpob, succ
B.mycoides FSLH7-0683	Dairy products, pasteurized 2% milk (2005)	USA	24/26	TH, H, K, P, clpc, dinb, purf
B.mycoides MOD1Bc221	Food, food product (2016)	USA, Maryland	23/26	TH, H, P, clpc, dinb, gyrb, mbl, mdh, muts, purf, pyca1
B.mycoides FSLM7-0109	Dairy products, raw milk (2011)	USA	23/26	TH, K, P, clpc, dinb, ftsa, gdpd, pyre, succ
B.c_group VD078	Soil	Greenland	21/26	TH, H, clpc, gdpd, gmk, mbl, mdh, muts, purh, pyca1, rpob, tpi
B.mycoides B4117	Food (2013)	Netherlands	21/26	TH, H, dinb, gdpd, gmk, gyrb, ilvd, mdh, muts, pyca1, rpob, tpi
B.mycoides ATCC6462	Soil	Korea (South), Seoul	20/26	K, adk, ccpa, clpc, gdpd, glpf, gmk, ilvd, panc, purh, pyca2, pyre, recf, succ, yhfl
B.mycoides FSLM7-0669	Dairy products, raw milk (2011)	USA	20/26	K, P, adk, dinb, glpt, panc, purf, pyre, succ
B.cereus 37R3	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. hereward grown in a plot in which the previous crop was wheat (Triticum aestivum) var. hereward]	UK, England, Rothamsted	7/7	P
B.c_group KW19	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.cereus 37R1	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. hereward grown in a plot in which the previous crop was wheat (Triticum aestivum) var. hereward]	UK, England, Rothamsted	7/7	P
B.thuringiensis PLBPN37/1	Soil (2012)	Poland	7/7	P
B.thuringiensis PLmJAS15	Soil (2012)	Poland	7/7	P
B.thuringiensis PLmJAS20	Soil (2012)	Poland	7/7	P
B.cereus 37R5	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. cadenza grown in a plot in which the previous crop was wheat (Triticum aestivum) var. hereward]	UK, England, Rothamsted	7/7	P
B.c_group D28-3.B.i	Soil (2006)	UK	7/7	P
B.thuringiensis PLmBPN20	Soil (2012)	Poland	7/7	P
B.cereus 22R5	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. x:19 grown in a plot in which the previous crop was wheat (Triticum aestivum) var. hereward]	UK, England, Rothamsted	7/7	P
B.c_group D28-13.b.i	Soil (2006)	UK	7/7	P
B.cereus 58R3	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. hereward grown in a plot in which the previous crop was wheat (Triticum aestivum) var. cadenza]	UK, England, Rothamsted	7/7	P
B.cereus 32R6	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. hereward grown in a plot in which the previous crop was wheat (Triticum aestivum) var. hereward]	UK, England, Rothamsted	7/7	P
B.c_group D10-8.A.i	Soil (2006)	UK	7/7	P
B.mycoides B0518			7/7	P
B.cereus 32R3	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. cadenza grown in a plot in which the previous crop was wheat (Triticum aestivum) var. hereward]	UK, England, Rothamsted	7/7	P
B.weihenstephanensis Bw204	Food (2005)	UK, Wales, Cardiff	7/7	P
B.c_group 9304	Food (2004)	UK, England, Bristol	7/7	P
B.cereus 37R6	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. hereward grown in a plot in which the previous crop was wheat (Triticum aestivum) var. hereward]	UK, England, Rothamsted	7/7	P
B.c_group B951			7/7	P
B.c_group PL15	Soil		7/7	P
B.c_group E5i6	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P

11 isolate(s) sharing MLST alleles in supercluster 19

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS012491	Plant, Core Other Plant (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis JM-Mgvxx-63	Other, oil-contaminated mangrove sediment (2013)	Brazil, Sao Paulo, Bertioga	25/26	TH, H, K, P, clpc, dinb, gdpd, yhfl
B.cereus AFS085114	Plant, Core Other Plant (2014)	USA, North Carolina	23/26	H, K, clpc, dinb, gdpd, glpf, gmk, ilvd, panc, purf, pyca2, tpi
B.thuringiensis BA04	Soil (2013)	India, Assam	22/26	TH, H, CS, gyrb, ilvd, muts, pyca1, rpob, tpi
B.thuringiensis HS18-1	Soil (2009)	China, Sichuan Province	18/26	H, clpc, gdpd, glpf, gmk, mdh, muts, purf, pyca1, pyca2, rpob, tpi
B.cereus RIVMBC964	Food, kebab (2002)	Netherlands	17/26	H, clpc, glpf, gyrb, mdh, muts, panc, purh, pyca1, pyca2, rpob
B.thuringiensis AFS065400	Soil (2014)	USA, New York	16/26	H, clpc, gdpd, glpf, gyrb, ilvd, muts, pyca2, rpob, tpi
B.cereus S6646	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.thuringiensis KBAD4	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBAD6	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBAD1	Soil, Forest soil (2000)	France, Versailles	6/6	CS

132 isolate(s) sharing MLST alleles in supercluster 20

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis Lr7/2	Other, Water (2011)	Chile, Lirima thermal springs	26/26	TH, H, K, CS, P
B.thuringiensis AFS066483	Plant, Corn leaf (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4M3#2	Animal, Insect, silkworm (Bombyx mori) (2013) [two complete genomes sequenced for this strain with different MLST sequences and origins; strain sequenced by Biology and Biochemistry, University of Bath, England, UK; sequences conflicting with isolate BGSC4M3#1]	UK	26/26	TH, H, K, CS, P
B.thuringiensis WBt-2	Soil (2003)	China, Hebei, Baoding	26/26	TH, H, K, CS, P
B.c_group Schrouff	Food		26/26	TH, H, K, CS, P
B.c_group VD022	Other, Water from a small pond site	Belgium	26/26	TH, H, K, CS, P
B.thuringiensis AFS053253	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis HD542	Animal, insect	USA	26/26	TH, H, K, CS, P
B.thuringiensis AFS094730	Plant, Soybean leaf (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4C3	Animal, Insect, silkworm (Bombyx mori)	France	26/26	TH, H, K, CS, P
B.thuringiensis AFS018331	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS076262	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis AFS023096	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4BR1	Animal, Insect, Black Arches/Nun Moth (Lymantria monacha) larvae	Denmark	26/26	TH, H, K, CS, P
B.thuringiensis AFS036437	Food, Mushroom (2013)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4R1	[Wild type isolate]		26/26	TH, H, K, CS, P
B.thuringiensis AFS054059	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis AFS046081	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis AFS015413	Plant, Corn grainbin dust (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS086178	(2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4K1	Animal, Insect, silkworm (Bombyx mori) (2013)	UK	26/26	TH, H, K, CS, P
B.thuringiensis AFS029508	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis AFS002494	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS095482	Other, excrement (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.c_group K-5975c	Food		26/26	TH, H, K, CS, P
B.thuringiensis AFS030095	Plant, Soybean root (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis AFS053994	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS075396	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis AFS066671	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4C1	Animal, Insect, silkworm (Bombyx mori) (1987) [two complete genomes sequenced for this strain with identical MLST sequences]	Czechoslovakia	26/26	TH, H, K, CS, P
B.thuringiensis AFS064999	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis AFS043402	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis AFS090355	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis HD12	Soil (2012)	USA	26/26	TH, H, K, CS, P
B.thuringiensis AFS059859	(2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS016611	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis AFS065825	Plant, Soybean root (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis AFS055421	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis AFS032723	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.c_group MSX-A1			26/26	TH, H, K, CS, P
B.thuringiensis AFS022028	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis AFS043499	Plant, Soybean root (2013)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis AFS093126	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4AK1	(1994)	Korea (South)	26/26	TH, H, K, CS, P
B.thuringiensis AFS070359	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis AFS019758	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS053027	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis AFS055470	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.c_group TIAC219	Food		26/26	TH, H, K, CS, P
B.thuringiensis AFS054136	Plant, Corn grainbin dust (2013)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS054440	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis YBT-032	Soil	China	26/26	TH, H, K, CS, P
B.thuringiensis AFS022064	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4AA1	Soil (1987) [originally classified as B.thuringiensis tenebrionis; two complete genomes sequenced for this strain with identical MLST sequences]	UK	26/26	TH, H, K, CS, P
B.cereus G9842	Human, faeces/stools (1996) [from the same food poisoning outbreak as isolates G9843 and G9844; human diarrhea]	USA, Nebraska	26/26	TH, H, K, CS, P
B.thuringiensis AFS095989	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis L-7601	(2015)	China, Tianjin	26/26	TH, H, K, CS, P
B.thuringiensis AFS004356	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS050333	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS056670	Plant, Corn grainbin dust (2013)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS061760	Plant, Corn (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS046545	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis AFS066485	Food, Mushroom (2013)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS000517	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis HD771			26/26	TH, H, K, CS, P
B.thuringiensis AFS040661	Plant, Corn leaf (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis HD600	Animal, Insect, silkworm (2007)	Japan	26/26	TH, H, K, CS, P
B.thuringiensis AFS040987	Plant, Soybean root (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis AFS042804	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis AFS031210	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis T04001		Canada	25/25	H, K, CS, gmk, ilvd, pta, purh, pyca2, tpi
B.thuringiensis BGSC4E3	[Wild type isolate]	UK	25/26	K, CS, P, ccpa, ftsa, glpt, pyre, recf, succ
B.thuringiensis AFS050550	Plant, Soybean leaf (2014)	USA, Minnesota	25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.thuringiensis AFS075683	Animal, earthworm (2013)	USA, Minnesota	25/26	TH, H, CS, P, gyrb, mbl, mdh, muts, rpob
B.thuringiensis AFS007900	Plant, Soybean core (2014)	USA, Iowa	25/26	TH, K, CS, P, ftsa, pyre, recf
B.thuringiensis DAR81934#2	[exhibits molluscicidal activity toward the pest snail Cernuella virgata; two complete genomes sequenced for this strain with different MLST sequences; strain sequenced by Joint Genome Institute, Walnut Creek, California, USA; sequences conflicting with isolate DAR81934#1]	Australia, Port Campbell National Park	25/26	TH, H, CS, P, gyrb, mbl, mdh, muts, rpob
B.thuringiensis AFS017371	(2014)	USA, Iowa	25/26	TH, H, K, P, dinb, gdpd, purf, yhfl
B.cereus MOD1Bc143	Food, Hybrid Tilapia (2006)	USA, Maryland	24/26	TH, H, P, clpc, dinb, gdpd, gyrb, mbl, muts, pyca1, rpob, yhfl
B.thuringiensis DAR81934#1	[exhibits molluscicidal activity toward the pest snail Cernuella virgata; two complete genomes sequenced for this strain with different MLST sequences; strain sequenced by School of Agricultural and Wine Sciences, Charles Sturt University, Wagga Wagga, New South Wales, Australia; sequences conflicting with isolate DAR81934#2]	Australia, Port Campbell National Park	24/26	TH, CS, P, ftsa, gyrb, mbl, mdh, muts, recf, rpob, succ
B.thuringiensis BGSC4BS1	Soil	Spain	24/26	TH, H, CS, P, gyrb, mbl, muts, rpob
B.thuringiensis BGSC4BZ1	Soil, black soil	China	23/26	TH, H, P, clpc, dinb, gdpd, gyrb, mdh, muts, rpob, yhfl
B.c_group HuB4-4	Soil	Belgium	23/26	TH, CS, P, ftsa, gyrb, mbl, mdh, muts, pyre, rpob
B.thuringiensis AFS089089	Plant, Corn grainbin dust (2013)	USA, Iowa	21/26	P, adk, ccpa, clpc, dinb, ftsa, gdpd, glpt, gyrb, mdh, muts, pyca1, recf, rpob, yhfl
B.thuringiensis AFS049207	Other, excrement (2014)	USA, Iowa	20/26	TH, P, clpc, gdpd, gyrb, muts, purf, pyca1, rpob, succ, yhfl
B.thuringiensis IBL122	Soil (1983) [bears Photorhabdus/Yersinia-like toxin genes]	USA, Wyoming	7/7	P
B.thuringiensis T04024	(1981)	Pakistan	7/7	P
B.thuringiensis IBL275	Soil (1983) [bears Photorhabdus/Yersinia-like toxin genes]	USA, Wyoming	7/7	P
B.thuringiensis IBL273	Soil (1983) [bears Photorhabdus/Yersinia-like toxin genes]	USA, Wyoming	7/7	P
B.thuringiensis 4btt		USA	7/7	P
B.thuringiensis T10018	Animal, Insect, silkworm (Bombyx mori) (1982)	Japan	7/7	P
B.thuringiensis IBL3579	Soil (1983) [bears Photorhabdus/Yersinia-like toxin genes]	USA, New York	7/7	P
B.thuringiensis T08009#1	(1979) [sequences conflicting with isolate T08009#2]	USA	7/7	P
B.thuringiensis T04016	Animal, Insect, silkworm (Bombyx mori) (1980)	Pakistan	7/7	P
B.cereus G9843	Human, faeces/stools (1996) [from the same food poisoning outbreak as isolates G9842 and G9844]	USA, Nebraska	7/7	P
B.thuringiensis T08023	(1987)	Brazil	7/7	P
B.thuringiensis IBL10011	[bears Photorhabdus/Yersinia-like toxin genes]		7/7	P
B.thuringiensis T08001	(1963)	USA	7/7	P
B.thuringiensis IBL10010	[bears Photorhabdus/Yersinia-like toxin genes]		7/7	P
B.cereus G9844	Human, faeces/stools (1996) [from the same food poisoning outbreak as isolates G9842 and G9843]	USA, Nebraska	7/7	P
B.cereus B06_032	Human	France	7/7	TH
B.thuringiensis IBL500	Soil (1986) [bears Photorhabdus/Yersinia-like toxin genes]	Norway	7/7	P
B.thuringiensis BGSC4M2		UK, England	7/7	P
B.thuringiensis IBL1410	Other, Novodor bio-insecticide from Mycogen (1994)	USA, California, San Diego	7/7	P
B.thuringiensis IBL3090	Soil (1983) [bears Photorhabdus/Yersinia-like toxin genes]	USA, New York	7/7	P
B.c_group KW63	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.thuringiensis IBL3476	Soil	USA, Maryland	7/7	P
B.cereus 3L4	Dairy products, milk products (2016)	China, Shaanxi Province	7/7	P
B.thuringiensis T04002	(1965) [sequences conflicting with isolate BGSC4E6]	Canada	7/7	P
B.c_group 295618	Other, heroin	UK	7/7	TH
B.thuringiensis BGSC4K5			7/7	P
B.thuringiensis LFB1588	Dairy products, pasteurized whole milk (2011)	Brazil	7/7	TH
B.thuringiensis 127-S-3	Plant, leaves of clover (Trifolium hybridum) (2004)	UK	7/7	P
B.c_group KW55	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.thuringiensis 2810-S-16	Plant, leaves of clover (Trifolium hybridum) (2004)	UK	7/7	P
B.thuringiensis T10017	Soil (1982)	USA	7/7	P
B.c_group FSLK6-0268	Dairy products, milk products (2012)	USA	7/7	P
B.thuringiensis 286-S-6	Plant, leaves of clover (Trifolium hybridum) (2004)	UK	7/7	P
B.cereus B06_005	Human, wound	France	7/7	TH
B.cereus HF31	Food (2015)	Germany, Berlin	7/7	P
B.thuringiensis T15001	Soil (1983)	USA, North Dakota	7/7	P
B.c_group BGSC4Q4	[Wild type isolate]		7/7	P
B.c_group FSLW7-1101	Dairy products, milk products (2010)	USA	7/7	P
B.thuringiensis T10001	(1967)	Germany	7/7	P
B.thuringiensis IBL747	Soil (1983) [bears Photorhabdus/Yersinia-like toxin genes]	USA, New York	7/7	P
B.c_group 295171	Human, blood	UK	7/7	TH
B.cereus BC_14	Food, egg product (2006)	Italy (Southern)	7/7	P
B.thuringiensis 169-S-16	Plant, leaves of clover (Trifolium hybridum) (2004)	UK	7/7	P
B.c_group FSLW7-1334	Human, faeces/stools (2011)	USA	7/7	P
B.c_group KW27	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.thuringiensis T08012	Animal, Insect, silkworm (Bombyx mori) (1980)	Pakistan	7/7	P
B.thuringiensis 158-S-3	Plant, leaves of clover (Trifolium hybridum) (2004)	UK	7/7	P
B.thuringiensis T08031	Other, lake sediments (1991)	Brazil	7/7	P

21 isolate(s) sharing MLST alleles in supercluster 21

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.wiedmannii AFS064159	Plant, Weed leaf (2014)	USA, Ohio	26/26	TH, H, K, CS, P
B.wiedmannii AFS054563	Plant, Corn leaf (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.c_group WSBC10311	[B.cereus or B.weihenstephanensis]	Germany, Weihenstephan	26/26	TH, H, K, CS, P
B.wiedmannii AFS057498	Plant, Weed plant (2014)	USA, Indiana	26/26	TH, H, K, CS, P
B.wiedmannii AFS028955	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.wiedmannii AFS026476	(2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.wiedmannii AFS071466	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.c_group BAG6X1-1	Soil	USA, Massachusetts, Boston	26/26	TH, H, K, CS, P
B.wiedmannii AFS090430	Plant, Corn grainbin dust (2013)	USA, Iowa	26/26	TH, H, K, CS, P
B.wiedmannii AFS078926	Plant, Soybean core (2014)	USA, Iowa	25/26	TH, K, CS, P, ftsa, recf, succ
B.wiedmannii AFS063338	Soil (2014)	USA, Iowa	25/26	TH, K, CS, P, pyre, recf, succ
B.wiedmannii AFS064408	Other, excrement (2014)	USA, Iowa	25/26	TH, H, CS, P, gyrb, mbl, mdh, pyca1, rpob
B.cereus FSLM8-0091	Dairy products, raw milk (2012)	USA	25/26	TH, H, K, P, clpc, dinb, purf, yhfl
B.wiedmannii AFS072284	Plant, Soybean leaf (2014)	USA, Illinois	24/25	TH, K, CS, ftsa, gmk, purh, pyre, recf, tpi
B.wiedmannii AFS056359	Plant, Weed plant (2014)	USA, Indiana	24/26	TH, H, P, dinb, gdpd, gyrb, mbl, mdh, muts, purf, pyca1, yhfl
B.wiedmannii AFS002707	Plant, Soybean leaf (2014)	USA, Illinois	24/26	K, CS, P, adk, ftsa, glpt, recf, succ
B.thuringiensis GOE6#1	Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)	Germany, Goettingen	24/26	CS, P, ccpa, ftsa, glpt, gyrb, mdh, muts, pyca1, pyre, recf, rpob, succ
B.c_group BAG2X1-2	Soil	USA, Massachusetts, Boston	23/26	K, CS, adk, ccpa, ftsa, glpf, glpt, gmk, ilvd, pta, purh, recf, tpi
B.c_group PL24	Soil		7/7	P
B.c_group PL16	Soil		7/7	P
B.thuringiensis PLBB18/1	Soil (2012)	Poland	7/7	P

25 isolate(s) sharing MLST alleles in supercluster 22

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis IBL3708	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3712	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3761	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3759	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3713	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3690	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3688	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3731	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3692	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3700	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3726	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3715	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3801	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3691	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3724	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3716	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3686	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3684	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3802	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3694	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3717	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3709	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3728	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3714	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3687	Soil (2009)	USA, Maryland	7/7	P

26 isolate(s) sharing MLST alleles in supercluster 23

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.wiedmannii AFS056211	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.wiedmannii AFS052086	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.wiedmannii AFS075437	Other, excrement (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.wiedmannii AFS024711	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.wiedmannii AFS025735	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.wiedmannii AFS036771	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.wiedmannii AFS021943	Plant, Soybean leaf (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.wiedmannii AFS027918	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.wiedmannii AFS002508	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.wiedmannii AFS067814	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.wiedmannii AFS030115	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.wiedmannii AFS008930	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.wiedmannii AFS061181	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.wiedmannii AFS086460	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.wiedmannii AFS089520	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.wiedmannii AFS024024	Plant, Corn core (2014)	USA, Illinois	25/26	TH, H, K, CS, gmk, ilvd, purh
B.wiedmannii AFS078153	Animal, earthworm (2013)	USA, Minnesota	25/26	H, K, P, clpc, dinb, gdpd, purf, yhfl
B.wiedmannii AFS005864	Plant, Corn (2014)	USA, Minnesota	25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.wiedmannii AFS042581	Animal, earthworm (2013)	USA, Minnesota	25/26	H, K, CS, glpf, gmk, ilvd, pta, purh, tpi
B.wiedmannii AFS015207	Plant, Soybean core (2014)	USA, Iowa	25/26	TH, H, K, P, clpc, dinb, purf, yhfl
B.wiedmannii AFS032503	Soil (2014)	USA, New York	25/26	TH, K, CS, P, ftsa, pyre, recf
B.wiedmannii AFS070572	Plant, Soybean root (2014)	USA, Iowa	25/26	TH, H, K, CS, gmk, ilvd, purh
B.wiedmannii AFS038776	Animal, earthworm (2013)	USA, Minnesota	24/26	H, K, clpc, dinb, gdpd, glpf, gmk, ilvd, pta, purf, purh, pyca2, yhfl
B.wiedmannii AFS089424	Plant, Soybean core (2014)	USA, Iowa	23/26	TH, H, K, clpc, dinb, ilvd, purf, purh, yhfl
B.wiedmannii AFS053236	Plant, Corn root (2014)	USA, Iowa	23/26	K, adk, clpc, dinb, ftsa, gdpd, glpf, glpt, gmk, ilvd, purf, purh, pyca2, pyre, recf, succ, tpi, yhfl
B.c_group AR14-5	Soil (2012)	Argentina	7/7	P

64 isolate(s) sharing MLST alleles in supercluster 24

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis T01001	Animal, Insect, Mediterranean flour moth/mill moth (Ephestia kuhniella/Anagasta kuehniella) (1958)	Canada	26/26	TH, H, K, CS, P
B.thuringiensis AFS097514	Plant, Soybean leaf (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS073530	Plant, Soybean leaf (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS030961	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4A3	Animal, Insect, silkworm (Bombyx mori) (2013)	UK	26/26	TH, H, K, CS, P
B.thuringiensis AFS098336	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS057829	Plant, Wheat plant (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis ATCC10792#3	Animal, Insect, Mediterranean flour moth/mill moth (Ephestia kuhniella/Anagasta kuehniella) [three complete genomes sequenced for this strain with different sequences and origins; strain sequenced by Biological Defense Research Directorate (BDRD), Rockville, Maryland, USA; sequences conflicting with isolates ATCC10792#1 and ATCC10792#2]	Israel	26/26	TH, H, K, CS, P
B.thuringiensis NA205-3	Other, dust from maize silo	Spain	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4A4	Animal, Insect, tobacco moth/cacao moth/warehouse moth (Ephestia elutella)	UK, England	26/26	TH, H, K, CS, P
B.thuringiensis IS5056	Soil (2005)	Poland, Biebrza National Park	26/26	TH, H, K, CS, P
B.thuringiensis AFS040438	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis CT-43		China	26/26	TH, H, K, CS, P
B.thuringiensis T01328	Soil (1994)	Brazil, Sao Paulo, Cubatao county	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4BP1	Soil, sesame field	Korea (South)	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4BN1	Food, beans	China	26/26	TH, H, K, CS, P
B.thuringiensis AFS052794	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis AFS047495	Plant, Corn (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS082247	Plant, Corn leaf (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis AFS039774	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS010823	Plant, Soybean leaf (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS081620	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS077661	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS094706	(2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis Bt407	[Pasteur Institute; well studied isolate that has been cured of the plasmid that encodes the insecticidal crystal toxin; three complete genomes sequenced for this strain with identical MLST sequences]	France, Paris	26/26	TH, H, K, CS, P
B.thuringiensis AFS052676	Plant, Soybean leaf (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS099505	Plant, Soybean core (2014)	USA, Iowa	25/26	H, K, P, clpc, dinb, gdpd, purf, yhfl
B.thuringiensis AFS038158	Plant, Soybean root (2013)	USA, Minnesota	25/26	TH, H, CS, P, gyrb, mbl, mdh, muts, rpob
B.thuringiensis AFS057784	Plant, Corn core (2014)	USA, Illinois	25/26	TH, H, K, CS, gmk, ilvd, purh
B.thuringiensis ATCC10792#2	Animal tissue (1946) [three complete genomes sequenced for this strain with different sequences and origins; strain sequenced by School of Applied Biosciences, Kyungpook National University, Daegu, South Korea; sequences conflicting with isolates ATCC10792#1 and ATCC10792#3]	USA	24/24	TH, K, P, clpc, dinb, ftsa, gdpd, purf, recf, succ
B.thuringiensis AFS060060	Plant, Soybean core (2014)	USA, Iowa	24/26	TH, H, CS, gmk, gyrb, mdh, muts, purh, pyca1, rpob, tpi
B.thuringiensis AFS099341	Plant, Corn leaf (2014)	USA, Illinois	24/26	H, K, CS, glpf, gmk, purh, pyca2, tpi
B.thuringiensis AFS007186	Plant, Corn leaf (2014)	USA, Illinois	24/26	H, K, CS, glpf, gmk, ilvd, purh, pyca2
B.thuringiensis ATCC10792#1	[three complete genomes sequenced for this strain with different sequences and origins; strain sequenced by Department of Food Science and Biotechnology College of Biotechnology and Bioscience, Kangwon National University, Chunchon, South Korea; sequences conflicting with isolates ATCC10792#2 and ATCC10792#3]		23/23	P, ccpa, dinb, ftsa, gdpd, glpt, gyrb, mbl, mdh, muts, panc, purf, pyca1, pyre, recf, succ, yhfl
B.thuringiensis AFS098506	Plant, Corn root (2014)	USA, Iowa	23/26	K, CS, adk, ftsa, glpf, glpt, gmk, ilvd, pta, pyca2, recf, succ, tpi
B.thuringiensis AFS011848	Plant, Soybean core (2014)	USA, Iowa	22/26	TH, H, clpc, gdpd, gmk, gyrb, ilvd, mbl, mdh, muts, rpob, tpi, yhfl
B.thuringiensis AFS058254	Plant, Soybean leaf (2014)	USA, Minnesota	22/26	K, P, clpc, ftsa, glpt, panc, purf, pyre, recf, succ, yhfl
B.thuringiensis AFS001991	Plant, Corn leaf (2014)	USA, Illinois	21/26	TH, H, CS, gyrb, mbl, mdh, purh, rpob
B.thuringiensis T01058	(1964)	Switzerland	7/7	P
B.thuringiensis BGSC4A2	[Wild type isolate]		7/7	P
B.thuringiensis BGSC4A1#2	(1915) [Wild type isolate; sequences conflicting with isolate BGSC4A1#1]		7/7	P
B.thuringiensis T01015	(1962)	Bulgaria	7/7	P
B.thuringiensis BGSC4D3	[Wild type isolate]		7/7	P
B.thuringiensis BGSC4A8			7/7	P
B.c_group DVM_30	Soil	Japan	7/7	P
B.thuringiensis BGSC4A1#1	(1915) [Wild type isolate; sequences conflicting with isolate BGSC4A1#2]		7/7	P
B.thuringiensis IBL425	Soil (1983)	USA, New York	7/7	P
B.thuringiensis T01022	Animal, earthworm/redworm (Eisenia foetida) (1964)	USA	7/7	P
B.thuringiensis BGSC4A7	[acrystalliferous]		7/7	P
B.thuringiensis BGSC4A6	[Wild type isolate]		7/7	P
B.thuringiensis T01326	Soil (1994)	Chile	7/7	P
B.c_group KW33	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.thuringiensis BGSC4A5		Czechoslovakia	7/7	P
B.thuringiensis KBBF3	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBB7	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBB5	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBB8	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBF4	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBB6	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBF2	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBF6	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBE5	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBB4	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBF1	Soil, Forest soil (2000)	France, Versailles	6/6	CS

6 isolate(s) sharing MLST alleles in supercluster 25

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus MB.22	Food (2014)	Germany, Munich	26/26	TH, H, K, CS, P
B.cereus MOD1Bc97	Other, Oxytetracycline Medicated Fish Feed (2006)	USA, Maryland	25/26	TH, H, K, P, clpc, dinb, purf, yhfl
B.cereus AFS061996	(2014)	USA, North Carolina	21/26	TH, K, P, clpc, dinb, gdpd, purf
B.cereus NVH0246/02	Food, shrimps (2002) [originally proposed as B.anthracis]	Thailand	7/7	H
B.c_group TE7-9	Soil (2011)	Kenya	7/7	P
B.cereus F5191	Human, lung tissue (1983) [from the same patient biopsy as isolate F5190]	USA, California	7/7	P

39 isolate(s) sharing MLST alleles in supercluster 26

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis IBL3755	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3746	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3745	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3756	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3772	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3758	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3739	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3765	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3762	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3769	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3741	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3718	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3733	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3773	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3735	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3736	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3744	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3768	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3786	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3787	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3775	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3753	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3748	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3774	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3743	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3732	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3784	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3749	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3754	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3734	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3737	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3740	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3764	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3767	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3770	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3752	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3771	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3730	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3750	Soil (2009)	USA, Maryland	7/7	P

19 isolate(s) sharing MLST alleles in supercluster 27

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus MOD1Bc187	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc177	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc213	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc55	Plant, Sesame Seed (2015)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc212	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc210	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus SJ-S2	Human	USA, Tennessee, Memphis	26/26	TH, H, K, CS, P
B.cereus MOD1Bc201	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus AFS099758	Plant, Corn (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus MOD1Bc190	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc136	Food, Dietary Supplements (2015)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus SJ-S24	Human	USA, Tennessee, Memphis	26/26	TH, H, K, CS, P
B.cereus MOD1Bc184	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc64	Other, Baby Wipes (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus 16-00191			25/26	TH, H, K, P, clpc, dinb, gdpd, purf
B.cereus FRI35			25/26	TH, K, CS, P, ftsa, pyre, succ
B.cereus 143298.B	Human, wound infection (2004)	UK, Scotland	7/7	P
B.cereus FJ15BC328	Dairy products, milk products (2015)	China, Fujian Province	7/7	P
B.cereus H1548	Human, blood (2000) [human septicaemia, fatal]	USA, North Carolina	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 28

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.wiedmannii AFS001911	Plant, core (2014)	USA, North Carolina	24/26	H, K, CS, gmk, ilvd, pta, pyca2, tpi
B.wiedmannii AFS057349	Plant, core (2014)	USA, North Carolina	24/26	H, K, CS, gmk, ilvd, pta, pyca2, tpi

3 isolate(s) sharing MLST alleles in supercluster 29

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group A3i1	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group A3i3	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group PL17	Soil		7/7	P

2 isolate(s) sharing MLST alleles in supercluster 30

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus F3920	Human, lung (1982) [human pneumonia]	USA, South Dakota	7/7	P
B.cereus G1440	Human, lung (1988) [human pneumonia]	USA, Louisiana	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 31

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis Bt194		Brazil	7/7	P
B.thuringiensis LFB862	Food, black pepper (1994)	Brazil	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 32

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group A4i4	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group A4s3	Soil (2002)	UK, England, Berkshire	7/7	P
B.c_group A3o5	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P

10 isolate(s) sharing MLST alleles in supercluster 33

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis IBL3705	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3704	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3697	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3706	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3698	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3707	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3695	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3699	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3696	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3702	Soil (2009)	USA, Maryland	7/7	P

4 isolate(s) sharing MLST alleles in supercluster 34

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis BGSC4CC1	Soil, grain field	Pakistan	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4CE1	Soil	Azores	26/26	TH, H, K, CS, P
B.thuringiensis CEB02/079	[Pasteur Institute]	France, Paris	7/7	H
B.cereus BGSC6A7#2	Other, purified from commercial probiotic BIOSUBTYL DALAT, manufactured in Vietnam [sequences conflicting with isolate BGSC6A7#1]		7/7	P

66 isolate(s) sharing MLST alleles in supercluster 35

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis AFS099677	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS094922	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS076772	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS076861	Plant, tree leaf (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS097917	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4AO1	(1989)	Japan	26/26	TH, H, K, CS, P
B.thuringiensis AFS034818	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS036383	Plant, Soybean leaf (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS034600	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS088016	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS081470	Plant, Weed plant (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS056280	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS005140	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS030866	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS065666	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.thuringiensis AFS096960	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS058532	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS045876	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS098170	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS018617	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.thuringiensis AFS058843	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS097325	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS040392	Plant, Grass leaf (2013)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS006334	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis IBL200	Human, healthy human hand (1985) [israelensis-like serovar; bears Photorhabdus/Yersinia-like toxin genes]	USA, Maryland	26/26	TH, H, K, CS, P
B.thuringiensis AFS059039	Soil (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS020602	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.thuringiensis AFS024266	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS067808	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4N1	Animal, Insect, Greater Wax Moth/Honeycomb Moth (Galleria mellonella)	UK, England	26/26	TH, H, K, CS, P
B.thuringiensis AFS025510	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS013213	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis AFS060054	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS011659	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS022086	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.thuringiensis AFS031814	Soil (2014)	USA, New York	25/26	TH, H, CS, P, mbl, mdh, muts, pyca1, rpob
B.thuringiensis AFS041525	Plant, core (2014)	USA, North Carolina	25/26	TH, K, CS, P, ftsa, pyre, succ
B.thuringiensis AFS055708	Plant, core (2014)	USA, North Carolina	25/26	TH, H, K, P, clpc, dinb, gdpd, purf
B.thuringiensis BGSC4AP1	(1989)	Japan	25/26	TH, H, K, P, clpc, gdpd, purf, yhfl
B.thuringiensis AFS085829	Plant, core (2014)	USA, North Carolina	25/26	TH, H, CS, P, mbl, mdh, muts, pyca1, rpob
B.thuringiensis AFS012085	Plant, Corn root (2014)	USA, Iowa	25/26	TH, H, CS, P, gyrb, mbl, mdh, muts, pyca1
B.thuringiensis AFS086961	Soil (2014)	USA, New York	25/26	TH, K, CS, P, ftsa, pyre, succ
B.cereus FSLK6-0040	Dairy products, Laboratory Heat Treated Raw Milk (2012)	USA, New York	25/26	K, CS, P, ccpa, ftsa, glpt, pyre, recf, succ
B.thuringiensis AFS085496	Plant, core (2014)	USA, North Carolina	25/26	TH, K, CS, P, ftsa, pyre, recf
B.thuringiensis AFS006923	Soil (2014)	USA, North Carolina	25/26	TH, H, K, P, clpc, dinb, gdpd, yhfl
B.thuringiensis AFS066175	Plant, core (2014)	USA, North Carolina	25/26	TH, H, K, P, clpc, dinb, gdpd, yhfl
B.thuringiensis AFS034546	Plant, Soybean root (2014)	USA, Minnesota	24/26	K, CS, P, adk, ftsa, pyre, recf, succ
B.thuringiensis AFS036336	Plant, core (2014)	USA, North Carolina	24/26	K, CS, adk, ccpa, ftsa, glpt, gmk, ilvd, pta, purh, pyca2, pyre, recf, tpi
B.thuringiensis AFS085011	Plant, core (2014)	USA, North Carolina	24/26	TH, H, CS, gmk, gyrb, mbl, mdh, purh, pyca1, rpob, tpi
B.thuringiensis AFS019518	Plant, Soybean core (2014)	USA, Iowa	23/26	CS, P, ccpa, ftsa, glpt, gyrb, muts, pyca1, pyre, recf, rpob, succ
B.thuringiensis AFS057244	Soil (2014)	USA, New York	22/26	K, CS, adk, ccpa, ftsa, pta, purh, pyca2, pyre, recf, succ, tpi
B.thuringiensis IBL1115	Soil (1986) [bears Photorhabdus/Yersinia-like toxin genes]	Iceland	7/7	P
B.thuringiensis IBL90	Soil (1987) [bears Photorhabdus/Yersinia-like toxin genes]	USA, Wyoming	7/7	P
B.thuringiensis IBL26	Soil (1987) [bears Photorhabdus/Yersinia-like toxin genes]	USA, Wisconsin	7/7	P
B.thuringiensis IBL950	Soil (1983) [bears Photorhabdus/Yersinia-like toxin genes]	USA, North Carolina	7/7	P
B.thuringiensis IBL1140	Soil (1986) [bears Photorhabdus/Yersinia-like toxin genes]	Norway	7/7	P
B.thuringiensis IBL3790	Soil (2009)	USA, Maryland	7/7	P
B.c_group KW10	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.thuringiensis IBL888	Soil (1986) [bears Photorhabdus/Yersinia-like toxin genes]	Iceland	7/7	P
B.thuringiensis IBL110	Soil (1983) [bears Photorhabdus/Yersinia-like toxin genes]	USA, New York	7/7	P
B.thuringiensis IBL3788	Soil (2009)	USA, Maryland	7/7	P
B.c_group KW37	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.thuringiensis K14_5790	(2014)	Korea (South)	7/7	P
B.thuringiensis IBL54	Soil (1987) [bears Photorhabdus/Yersinia-like toxin genes]	USA, Montana	7/7	P
B.thuringiensis IBL3789	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL61	Soil (1987) [bears Photorhabdus/Yersinia-like toxin genes]	USA, Montana	7/7	P

18 isolate(s) sharing MLST alleles in supercluster 36

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.weihenstephanensis GOE7#2	Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)	Germany, Goettingen	26/26	TH, H, K, CS, P
B.weihenstephanensis GOE13	Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)	Germany, Goettingen	26/26	TH, H, K, CS, P
B.weihenstephanensis GOE1#2	Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)	Germany, Goettingen	26/26	TH, H, K, CS, P
B.weihenstephanensis GOE6#2	Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)	Germany, Goettingen	26/26	TH, H, K, CS, P
B.weihenstephanensis GOE3#2	Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)	Germany, Goettingen	26/26	TH, H, K, CS, P
B.weihenstephanensis GOE11	Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)	Germany, Goettingen	26/26	TH, H, K, CS, P
B.weihenstephanensis ADRIAI21	(1991)	France	26/26	TH, H, K, CS, P
B.weihenstephanensis GOE4#2	Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)	Germany, Goettingen	26/26	TH, H, K, CS, P
B.weihenstephanensis GOE12	Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)	Germany, Goettingen	26/26	TH, H, K, CS, P
B.weihenstephanensis GOE5#2	Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)	Germany, Goettingen	26/26	TH, H, K, CS, P
B.weihenstephanensis GOE2#2	Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)	Germany, Goettingen	25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.c_group BAG6O-2	Soil	USA, Massachusetts, Boston	25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.c_group E5i2	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group D10-15.B.i	Soil (2006)	UK	7/7	P
B.thuringiensis PLBB29/2	Soil (2012)	Poland	7/7	P
B.c_group A4g4	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group E2i5	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.cereus KBCH8	Soil, Forest soil (2000)	France, Versailles	6/6	CS

5 isolate(s) sharing MLST alleles in supercluster 37

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.pseudomycoides AFS070925	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.pseudomycoides AFS018356	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.pseudomycoides AFS009013	Plant, Corn leaf (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.pseudomycoides AFS099456	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.pseudomycoides AFS040159	Plant, Soybean root (2014)	USA, Missouri	24/26	TH, K, CS, ftsa, gmk, ilvd, recf, succ, tpi

6 isolate(s) sharing MLST alleles in supercluster 38

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus LCT-BC235	Other, culture sent to space aboard the Shenzhou-8 spacecraft; isolated after space flight		26/26	TH, H, K, CS, P
B.cereus LCT-BC25	Other, culture sent to space aboard the Shenzhou-8 spacecraft; isolated after space flight		26/26	TH, H, K, CS, P
B.cereus LCT-BC244			26/26	TH, H, K, CS, P
B.cereus TS2	Other, Saltern sediment (2014)	India, Tamil Nadu, Tuticorin (Thoothukudi)	24/26	H, K, P, clpc, dinb, gdpd, purf
B.cereus MOD1Bc107	Other, Oxytetracycline Medicated Fish Feed (2006)	USA, Maryland	16/26	K, adk, ccpa, clpc, dinb, ftsa, gdpd, gmk, purh, pyca2, recf
B.cereus 2013-10	Dairy products, milk products	China	7/7	P

43 isolate(s) sharing MLST alleles in supercluster 39

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 13061			26/26	TH, H, K, CS, P
B.cereus WSBC10035	Dairy products, pasteurized milk (1993)	Germany	26/26	TH, H, K, CS, P
B.cereus MHI86	Food, infant food	Germany	26/26	TH, H, K, CS, P
B.cereus MOD1Bc138	Food, Dietary Supplements (2015)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc224	Food, food product (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus B4086	Food, boiled rice (2012)	Netherlands	26/26	TH, H, K, CS, P
B.cereus MOD1Bc140	Food, Dietary Supplements (2015)	USA, Maryland	26/26	TH, H, K, CS, P
B.c_group AND1407	Food		26/26	TH, H, K, CS, P
B.cereus MB.1	Food (2014)	Germany, Munich	26/26	TH, H, K, CS, P
B.cereus MOD1Bc67	Other, Powdered Infant Formula (2015)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus F4429/71	Food, vanilla pudding (1971) [diarrheal food poisoning outbreak]	Netherlands	26/26	TH, H, K, CS, P
B.cereus MOD1Bc105	Other, Oxytetracycline Medicated Fish Feed (2006)	USA, Maryland	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4H1	Animal, Insect, Prominent moth (Notodonta aniera)	Czechoslovakia or USSR	26/26	TH, H, K, CS, P
B.cereus MOD1Bc99	Other, Oxytetracycline Medicated Fish Feed (2006)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc119	Food, Whole Black Pepper (2015)	USA, Maryland	25/26	TH, H, K, CS, gmk, ilvd, purh
B.cereus RIVMBC90	Human, faeces/stools (1999) [diarrheal food poisoning outbreak]	Netherlands	25/26	K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus FSLW8-0003	Dairy products, Ricotta/mozzarella whey (2012)	USA, New York	25/26	H, K, P, clpc, dinb, gdpd, purf, yhfl
B.cereus MB.17	Food (2014)	Germany, Munich	25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.cereus MOD1Bc113	Other, Powdered Infant Formula (2015)	USA, Maryland	25/26	TH, H, K, P, dinb, gdpd, purf, yhfl
B.c_group MSX-D12			25/26	H, K, CS, gmk, ilvd, pta, purh, pyca2, tpi
B.cereus H3081.97	Food (1997) [emetic toxin/cereulide producer; from the same food poisoning outbreak as isolates H3074.97 and H3076.97; outbreak linked to rice]	USA, Texas	22/22	P, ccpa, clpc, dinb, ftsa, glpt, gyrb, mbl, mdh, muts, panc, purf, pyca1, pyre, recf, yhfl
B.cereus AFS076904	Plant, Corn root (2013)	USA, Iowa	22/26	TH, P, clpc, dinb, gdpd, gyrb, mdh, muts, purf, pyca1, recf, rpob, succ
B.cereus EGD-AQ9	Other, sewage (2016)	India, Maharashtra, Nagpur	17/26	H, gmk, gyrb, ilvd, mdh, pta, purh, pyca1, pyca2, rpob, yhfl
B.cereus CC-1	Other, marine sediments (2015)	China, Bo Hai, Liaodong Bay, Panjin	17/26	CS, adk, ccpa, ftsa, gmk, pta, purh, pyca1, pyca2, pyre, rpob, succ
B.c_group AH840	[sequences conflicting with isolate T01001]		11/11	TH, H
B.cereus B06_007	Human, cutaneous	Norway	7/7	TH
B.cereus BFDA96178	Food (2007)	Taiwan, Taoyuan county	7/7	P
B.cereus NC1274	Human, vomit (1997) [human vomiting, emetic toxin/cereulide producer]	India	7/7	P
B.cereus NC1276	Food, rice (1997) [emetic toxin/cereulide producer]	India	7/7	P
B.thuringiensis BGSC4I3		USA	7/7	P
B.cereus B06_003	Human, blood	Norway	7/7	TH
B.cereus H3076.97	Human, faeces/stools (1997) [emetic toxin/cereulide producer; from the same food poisoning outbreak as isolates H3074.97 and H3081.97; outbreak linked to rice]	USA, Texas	7/7	P
B.cereus NC610	Other, environmental (1990) [emetic toxin/cereulide producer]	Japan	7/7	P
B.cereus NC526	Other, environmental (1983) [emetic toxin/cereulide producer]	Japan	7/7	P
B.cereus BC_28	Food, ready-to-eat product (2006)	Italy (Northwestern)	7/7	P
B.cereus NC113	Other, environmental (1983) [emetic toxin/cereulide producer]	Japan	7/7	P
B.cereus NC111	Food, rice (1983) [emetic toxin/cereulide producer]	Japan	7/7	P
B.cereus B33			7/7	P
B.cereus NC-std	Food, rice [emetic toxin/cereulide producer]	UK	7/7	P
B.cereus F00/3086	Human, neutropenia in child; Public Health Laboratory (2000)	UK, England, Chelmsford	7/7	P
B.cereus HZ12-67	Dairy products, milk products (2012)	China	7/7	P
B.c_group AH1124	Human	France	7/7	TH
B.c_group KW2	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P

24 isolate(s) sharing MLST alleles in supercluster 40

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus BDRD-ST24	[Biological Defense Research Directorate (BDRD)]	USA, Maryland, Rockville	26/26	TH, H, K, CS, P
B.cereus M13	Food, Korean fermented food (2016)	Korea (South)	26/26	TH, H, K, CS, P
B.cereus 16-00187			26/26	TH, H, K, CS, P
B.cereus FSLW8-0824	Food, Finished RTE food product (2012)	USA, New York	26/26	TH, H, K, CS, P
B.cereus 16-00188			25/26	H, K, CS, glpf, gmk, ilvd, purh, pyca2, tpi
B.cereus SJ-S28	Human	USA, Tennessee, Memphis	24/25	K, CS, ccpa, ftsa, glpf, glpt, gmk, pta, purh, pyca2, pyre, recf, succ, tpi
B.cereus MOD1Bc219	Other, Baby Wipes (2016)	USA, Maryland	24/26	H, CS, glpf, gmk, gyrb, ilvd, mdh, muts, purh, pyca1, pyca2, rpob, tpi
B.cereus WSBC10028	Dairy products, pasteurized milk (1993) [from the same dairy as isolates WSBC10029, WSBC10030, WSBC10031, WSBC10042, WSBC10201, WSBC10204, WSBC10205, WSBC10206, WSBC10208, and WSBC10211]	Germany, Weihenstephan	14/14	H, P
B.cereus ATCC12480	Animal, sheep rumen		12/13	P, mbl, mdh, muts, pyca1, rpob
B.cereus BC_8	Food, egg product (2006)	Italy (Southern)	7/7	P
B.cereus NC1272	Food, pasta (1993) [human diarrhea]	Switzerland	7/7	P
B.cereus F4976	Human, lung (1983) [human pneumonia]	USA, Oregon	7/7	P
B.cereus FP17	Food, pasta (2002)	Italy	7/7	P
B.cereus BC_27	Food, ready-to-eat product (2006)	Italy (Northwestern)	7/7	P
B.cereus NCIB6349	(1950)		7/7	P
B.cereus NC1216	Dairy products, milk products (1996)	Japan	7/7	P
B.cereus BC_37	Dairy products, industrial dairy products (2006)	Italy (Northeastern)	7/7	P
B.cereus De1	Human, blood (2001)	Italy	7/7	P
B.cereus NC478	Food (1983)	Japan	7/7	P
B.cereus BC_4	Food, egg product (2006)	Italy (Southern)	7/7	P
B.cereus Cal3	Other, board machine (1998)	Finland	7/7	P
B.cereus NC392	Human, faeces/stools (1982)	Japan	7/7	P
B.cereus NC383	Human, faeces/stools (1982)	Japan	7/7	P
B.cereus NC545	Food, rice (1983)	Japan	7/7	P

18 isolate(s) sharing MLST alleles in supercluster 41

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis T02001	Animal, Insect, forest tent caterpillar moth (Malacosoma disstria) (1958) [two complete genomes sequenced for this strain with identical MLST sequences]	USA	26/26	TH, H, K, CS, P
B.thuringiensis YBT-020			25/25	TH, H, K, CS, ilvd, purh, tpi
B.thuringiensis IBL3268	Soil (1984)	Nepal	7/7	P
B.thuringiensis IBL1132	Soil (1986)	Norway	7/7	P
B.thuringiensis NCTC4041			7/7	P
B.thuringiensis IBL523	Soil (1987)	USA, California	7/7	P
B.thuringiensis BGSC4D2	[Wild type isolate]		7/7	P
B.thuringiensis IBL2408	Soil (1985)	Spain	7/7	P
B.thuringiensis IBL480	Soil (1986)	Sweden	7/7	P
B.thuringiensis IBL674	Soil (1984)	India	7/7	P
B.thuringiensis BGSC4B1	[Wild type isolate]		7/7	P
B.thuringiensis IBL1489	Soil (1985)	Spain	7/7	P
B.thuringiensis BGSC4B5			7/7	P
B.thuringiensis IBL535	Soil (1988)	USA, Maryland	7/7	P
B.thuringiensis IBL1211	Other, snow (1985)	USA, Maryland	7/7	P
B.thuringiensis IBL631	Soil (1985)	Morocco	7/7	P
B.thuringiensis IBL3870	Soil (1983)	USA, Wyoming	7/7	P
B.thuringiensis IBL1613	Soil (1985)	Spain	7/7	P

15 isolate(s) sharing MLST alleles in supercluster 42

Strain	Source	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 2000032803	Soil (1963)	7/7	P
B.cereus 2002013139		7/7	P
B.cereus 2002013140		7/7	P
B.cereus 2002013138		7/7	P
B.cereus 2002013145		7/7	P
B.cereus 2002013146		7/7	P
B.cereus 2000032950		7/7	P
B.cereus 2000032884		7/7	P
B.cereus 2000032847		7/7	P
B.cereus 2000032849		7/7	P
B.cereus 2000031061		7/7	P
B.cereus 2000032947		7/7	P
B.cereus 2000032928		7/7	P
B.cereus 2000032805		7/7	P
B.cereus 2000031062		7/7	P

2 isolate(s) sharing MLST alleles in supercluster 43

Click here to save the table as a tab-delimited text file.

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group PL28	Soil		7/7	P
B.c_group A3s10	Soil (2002)	UK, England, Berkshire	7/7	P

118 isolate(s) sharing MLST alleles in supercluster 44

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus MOD1Bc234	Human, faeces/stools (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus HZBCE-08	Food, Fried fish (2015)	China, Hangzhou	26/26	TH, H, K, CS, P
B.cereus HZBCE-01	Human, stomach (2015)	China, Hangzhou	26/26	TH, H, K, CS, P
B.cereus MB.15	Food (2014)	Germany, Munich	26/26	TH, H, K, CS, P
B.cereus 16-00176			26/26	TH, H, K, CS, P
B.cereus B4153	Dairy products, milk, (fermented) dairy products and desserts (2012)	Netherlands	26/26	TH, H, K, CS, P
B.c_group IS845/00	Animal, Mammals	Poland	26/26	TH, H, K, CS, P
B.cereus 16-00174			26/26	TH, H, K, CS, P
B.cereus HZBCE-10	Food, pork (2015)	China, Hangzhou	26/26	TH, H, K, CS, P
B.cereus HZBCE-09	Food, pork (2015)	China, Hangzhou	26/26	TH, H, K, CS, P
B.cereus F1-15			26/26	TH, H, K, CS, P
B.cereus B4085	Food (2013)	Netherlands	26/26	TH, H, K, CS, P
B.cereus MOD1Bc233	Human, faeces/stools (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MB.16	Food (2014)	Germany, Munich	26/26	TH, H, K, CS, P
B.c_group IS075	Animal, Mammals	Poland	26/26	TH, H, K, CS, P
B.c_group MSX-A12			26/26	TH, H, K, CS, P
B.cereus BDRD-ST26	[Biological Defense Research Directorate (BDRD)]	USA, Maryland, Rockville	26/26	TH, H, K, CS, P
B.cereus NC7401	Human, faeces/stools or vomit (1974 or 1994) [human vomiting, emetic food poisoning outbreak, emetic toxin/cereulide producer]	Japan	26/26	TH, H, K, CS, P
B.cereus B4116	Food (2013)	Netherlands	26/26	TH, H, K, CS, P
B.cereus 16-00183			26/26	TH, H, K, CS, P
B.cereus F4810/72	Human, vomit (1972) [emetic food poisoning outbreak; human vomiting; reference emetic toxin/cereulide producer]	UK	26/26	TH, H, K, CS, P
B.cereus MB.8	Food (2014)	Germany, Munich	26/26	TH, H, K, CS, P
B.cereus MOD1Bc225	Human, faeces/stools (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus HZBCE-07	Food, Fried fish (2015)	China, Hangzhou	26/26	TH, H, K, CS, P
B.cereus MB.21	Food (2014)	Germany, Munich	26/26	TH, H, K, CS, P
B.cereus NVH0075/95	Food, stew with vegetables, food poisoning (1995) (1995) [diarrheal food poisoning outbreak]	Norway	26/26	TH, H, K, CS, P
B.cereus MOD1Bc220	Food, food product (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus HZBCE-02	Human, stomach (2015)	China, Hangzhou	26/26	TH, H, K, CS, P
B.cereus SJ-S30	Human	USA, Tennessee, Memphis	26/26	TH, H, K, CS, P
B.c_group IS195	Animal, Mammals	Poland	26/26	TH, H, K, CS, P
B.cereus BCE-01	Human, stomach (2015)	China, Hangzhou	26/26	TH, H, K, CS, P
B.cereus UBA5641			25/25	H, K, CS, gmk, ilvd, pta, purh, pyca2, tpi
B.cereus B4078	(2012)	Netherlands	25/26	TH, H, K, P, clpc, dinb, purf, yhfl
B.cereus MB.8-1	Food (2014)	Germany, Munich	25/26	TH, H, K, P, clpc, dinb, purf, yhfl
B.cereus MB.20	Food (2014)	Germany, Munich	25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.c_group AH817	Human, periodontitis (1995)	Norway, Akershus	11/11	TH, H
B.cereus XA12-5	Dairy products, milk products (2012)	China	7/7	P
B.cereus F3080B/87	Food, chicken korma and rice (1987) [human vomiting, emetic food poisoning outbreak, emetic toxin/cereulide producer]	UK	7/7	P
B.cereus CR62-4	Food, rice (2013) [human vomiting, emetic toxin/cereulide producer]	China, Hubei Province	7/7	P
B.cereus 2002734478	Human, blood (2004) [human septicaemia]	USA	7/7	P
B.cereus NC1363	Human, faeces/stools (2001) [human vomiting, emetic toxin/cereulide producer]	Japan	7/7	P
B.cereus E6345	Human, lung (1979)	USA, New Hampshire	7/7	P
B.cereus CR15-1	Food, rice (2013) [human vomiting, emetic toxin/cereulide producer]	China, Hubei Province	7/7	P
B.cereus H2573.97	Food (1997) [emetic toxin/cereulide producer; from the same food poisoning outbreak as isolate H2576.97; outbreak linked to rice]	UK, England	7/7	P
B.cereus CR43-1	Food, rice (2013) [human vomiting, emetic toxin/cereulide producer]	China, Hubei Province	7/7	P
B.cereus H9312	Human, vomit (2000) [food poisoning outbreak, emetic toxin/cereulide producer]	USA, Minnesota	7/7	P
B.cereus 192	Food, rice (2011)	China, Zhejiang Province	7/7	TH
B.cereus CR27-2	Food, rice (2013) [human vomiting, emetic toxin/cereulide producer]	China, Hubei Province	7/7	P
B.cereus F665	Human, faeces/stools (1981) [emetic toxin/cereulide producer; from the same food poisoning outbreak as isolates F663, F666, and F667; outbreak linked to rice]	USA, North Carolina	7/7	P
B.cereus IF1-1	Food (2014) [emetic toxin/cereulide producer]	China, Hubei Province	7/7	P
B.cereus IF60-2	Food (2014) [emetic toxin/cereulide producer]	China, Hubei Province	7/7	P
B.cereus CR24-1	Food, rice (2013) [human vomiting, emetic toxin/cereulide producer]	China, Hubei Province	7/7	P
B.cereus B05_010	Human	France	7/7	TH
B.cereus H2576.97	Food (1997) [emetic toxin/cereulide producer; from the same food poisoning outbreak as isolate H2573.97; outbreak linked to rice]	UK, England	7/7	P
B.cereus NC622	Other, environmental (1990) [emetic toxin/cereulide producer]	Japan	7/7	P
B.cereus CR5-1	Food, rice (2013) [human vomiting, emetic toxin/cereulide producer]	China, Hubei Province	7/7	P
B.cereus NC-I55	Human, faeces/stools (1980) [human vomiting, emetic toxin/cereulide producer]	Japan	7/7	P
B.cereus NC524	Other, environmental (1983) [emetic toxin/cereulide producer]	Japan	7/7	P
B.c_group XA13-176	Food, rice (2013)	China, Shanxi Province	7/7	P
B.cereus B06_008	Human, blood	France	7/7	TH
B.cereus NC1291	Dairy products, milk products (1999) [human vomiting, emetic toxin/cereulide producer]	Japan	7/7	P
B.cereus IF7-1	Food (2014) [emetic toxin/cereulide producer]	China, Hubei Province	7/7	P
B.cereus SX15-22	Dairy products, milk products (2015)	China	7/7	P
B.cereus CR27-1	Food, rice (2013) [human vomiting, emetic toxin/cereulide producer]	China, Hubei Province	7/7	P
B.cereus CR63-3	Food, rice (2013) [human vomiting, emetic toxin/cereulide producer]	China, Hubei Province	7/7	P
B.cereus IF78-2	Food (2014) [emetic toxin/cereulide producer]	China, Hubei Province	7/7	P
B.cereus S74	Food, fried rice		7/7	P
B.cereus BGSC6A6	Other, used in probiotic SUBTYL [proposed as B.cereus var. vietnami or a new species B.vietnami]		7/7	P
B.thuringiensis IBL1297	Soil (1990)	USA, Maryland	7/7	P
B.cereus H9311	Food (2000) [food poisoning outbreak, emetic toxin/cereulide producer]	USA, Minnesota	7/7	P
B.cereus NC541	Other, environmental (1983) [emetic toxin/cereulide producer]	Japan	7/7	P
B.cereus H3074.97	Human, faeces/stools (1997) [emetic toxin/cereulide producer; from the same food poisoning outbreak as isolates H3076.97 and H3081.97; outbreak linked to rice]	USA, Texas	7/7	P
B.cereus AK14-66	Dairy products, milk products (2014)	China	7/7	P
B.cereus SX15-16	Dairy products, milk products (2015)	China	7/7	P
B.cereus SDAGr177a	Dairy products, raw milk (1998) [emetic toxin/cereulide producer]	Sweden	7/7	H
B.cereus F95/9130	Other, washing machine water rack, Birmingham Women-s Hospital (1995)	UK, England, Birmingham	7/7	P
B.cereus F663	Food (1981) [emetic toxin/cereulide producer; from the same food poisoning outbreak as isolates F665, F666, and F667; outbreak linked to rice]	USA, North Carolina	7/7	P
B.cereus NC1247	Food, rice (1996) [human vomiting, emetic toxin/cereulide producer]	Japan	7/7	P
B.cereus CR27-3	Food, rice (2013) [human vomiting, emetic toxin/cereulide producer]	China, Hubei Province	7/7	P
B.cereus IF5-1	Food (2014) [emetic toxin/cereulide producer]	China, Hubei Province	7/7	P
B.cereus NC92	Human, faeces/stools (1978) [emetic toxin/cereulide producer]	Japan	7/7	P
B.cereus CBC_99014	Human, vomiting	Japan	7/7	P
B.cereus WSBC10879	Food, rice [emetic toxin/cereulide producer]		7/7	H
B.cereus F667	Human, faeces/stools (1981) [emetic toxin/cereulide producer; from the same food poisoning outbreak as isolates F663, F665, and F666; outbreak linked to rice]	USA, North Carolina	7/7	P
B.cereus B06_018	Human, peritoneal	France	7/7	TH
B.cereus IF24-2	Food (2014) [emetic toxin/cereulide producer]	China, Hubei Province	7/7	P
B.cereus IF51-1	Food (2014) [emetic toxin/cereulide producer]	China, Hubei Province	7/7	P
B.c_group XA13-310	Food, rice (2013)	China, Shanxi Province	7/7	P
B.cereus RIVMBC62	Human, Vomit (1996) [emetic food poisoning outbreak, emetic toxin/cereulide producer]	Netherlands	7/7	H
B.cereus NC1237	Food, rice (1996) [emetic toxin/cereulide producer]	Japan	7/7	P
B.cereus H9310	Human, vomit (2000) [food poisoning outbreak, emetic toxin/cereulide producer]	USA, Minnesota	7/7	P
B.cereus NC-G15	Human, faeces/stools (1995) [human vomiting, emetic toxin/cereulide producer]	Japan	7/7	P
B.cereus NC199	Other, environmental (1979) [emetic toxin/cereulide producer]	Japan	7/7	P
B.cereus IF46-1	Food (2014) [emetic toxin/cereulide producer]	China, Hubei Province	7/7	P
B.cereus SX16-44	Dairy products, milk products (2016)	China	7/7	P
B.cereus F3942/87	Food, boiled rice (1987) [human vomiting, emetic food poisoning outbreak, emetic toxin/cereulide producer]	UK	7/7	P
B.cereus S710			7/7	P
B.cereus BC_7	Food, egg product (2006)	Italy (Southern)	7/7	P
B.cereus BGSC6A18	[Wild type isolate; USSR Research Institute for Antibiotics]		7/7	P
B.cereus NC444	Other, environmental (1982) [emetic toxin/cereulide producer]	Japan	7/7	P
B.c_group XA13-312	Food, rice (2013)	China, Shanxi Province	7/7	P
B.cereus BFDA96139	Food (2007)	Taiwan, Taipei county	7/7	P
B.cereus G0501	Food, rice (2005) [human vomiting, emetic toxin/cereulide producer]	Japan	7/7	P
B.cereus CBC_04003	Human, vomiting	Japan	7/7	P
B.cereus IH41385	Human, Dialysis liquid (1998) [connected to illness, emetic toxin/cereulide producer]	Finland	7/7	H
B.cereus BFDA96146	(2007)	Taiwan, Taipei county	7/7	P
B.cereus NC1239	Food, rice (1996) [emetic toxin/cereulide producer]	Japan	7/7	P
B.cereus SX15-28	Dairy products, milk products (2015)	China	7/7	P
B.cereus NC529	Other, environmental (1983) [emetic toxin/cereulide producer]	Japan	7/7	P
B.c_group XA13-110	Food, rice (2013)	China, Shanxi Province	7/7	P
B.c_group AK16-112	Food, rice (2013)	China, Shanxi Province	7/7	P
B.cereus F3351/87	Human, faeces/stools (1987) [emetic food poisoning outbreak, emetic toxin/cereulide producer]	UK	7/7	H
B.cereus NC604	Other, environmental (1990) [emetic toxin/cereulide producer]	Japan	7/7	P
B.cereus CBC_04001	Human, vomiting	Japan	7/7	P
B.cereus CR110-1	(2013) [human vomiting, emetic toxin/cereulide producer]	China, Hubei Province	7/7	P
B.cereus BFDA96175	Food, rice (2007)	Taiwan, Taoyuan county	7/7	P
B.cereus IF26-1	Food (2014) [emetic toxin/cereulide producer]	China, Hubei Province	7/7	P
B.cereus CR73-1	Food, rice (2013) [human vomiting, emetic toxin/cereulide producer]	China, Hubei Province	7/7	P

24 isolate(s) sharing MLST alleles in supercluster 45

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus ATCC10987#1	Dairy products, Cheese (1930)	Canada	26/26	TH, H, K, CS, P
B.cereus KS100Bc	Food service operation (2014)	Korea (South), Gyeonggi-do	26/26	TH, H, K, CS, P
B.cereus F3162/04	Human, faeces/stools (2004) [clinical isolate]		26/26	TH, H, K, CS, P
B.cereus MOD1Bc111	Other, Powdered Infant Formula (2015)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus B06_009	Human, cerebrospinal fluid (2008)	France, Paris	25/25	TH, H, K, P, clpc, dinb, purf, yhfl
B.cereus FSLW8-0050	Other, Condensed food product from evaporator (2012)	USA, New York	25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.c_group MCCC1A06192	Other, bottom seawater (2009)	Pacific Ocean	7/7	P
B.c_group MCCC1A06194	Other, middle seawater (2009)	Pacific Ocean	7/7	P
B.c_group MCCC1A06939	Other, bottom seawater (2010)	Pacific Ocean	7/7	P
B.cereus MM_2	Food (2003)	USA	7/7	P
B.c_group MCCC1A06191	Other, sediments (2009)	Pacific Ocean	7/7	P
B.c_group MCCC1A06193	Other, sediments (2009)	Pacific Ocean	7/7	P
B.c_group MCCC1A06941	Other, middle seawater (2010)	Pacific Ocean	7/7	P
B.c_group MCCC1A06928	Other, bottom seawater (2010)	Pacific Ocean	7/7	P
B.c_group MCCC1A06940	Other, bottom seawater (2010)	Pacific Ocean	7/7	P
B.c_group MCCC1A06188	Other, sediments (2009)	Pacific Ocean	7/7	P
B.c_group MCCC1A06942	Other, bottom seawater (2010)	Pacific Ocean	7/7	P
B.c_group MCCC1A06937	Other, surface seawater (2010)	Pacific Ocean	7/7	P
B.cereus BGSC6A40	Dairy products, milk products (1998) [sequences conflicting with isolate M21]	Finland	7/7	P
B.c_group MCCC1A06189	Other, bottom seawater (2009)	Pacific Ocean	7/7	P
B.cereus BFDA96145	Food (2007)	Taiwan, Taipei county	7/7	P
B.cereus B309	[German Armed Forces (Bundeswehr) Institute of Microbiology]	Germany, Munich	7/7	H
B.c_group MCCC1A06182	Other, bottom seawater (2009)	Pacific Ocean	7/7	P
B.c_group MCCC1A06187	Other, surface seawater (2009)	Pacific Ocean	7/7	P

4 isolate(s) sharing MLST alleles in supercluster 46

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis BGSC4XX2			7/7	P
B.thuringiensis BGSC4XX1			7/7	P
B.thuringiensis BGSC4XX3	Animal, Insect, dead larva	Argentina	7/7	P
B.thuringiensis BGSC4AY1	Food, black pepper powder	Brazil	7/26	P

28 isolate(s) sharing MLST alleles in supercluster 47

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis BR58	Plant, stored grain (2000)	Brazil, Londrina	26/26	TH, H, K, CS, P
B.thuringiensis 147	Soil (2014)	Brazil, Tocantins State	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4Q1	Animal, Insect, Culicidae (Mosquitoes) larvae (1977) [two complete genomes sequenced for this strain with identical MLST sequences]	Israel	26/26	TH, H, K, CS, P
B.thuringiensis UBA3967			26/26	TH, H, K, CS, P
B.thuringiensis HD1002	Other, Sewage	Israel	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4AX1	Soil	USSR	26/26	TH, H, K, CS, P
B.thuringiensis IBL4222	Animal, cat-s paw (1985) [israelensis-like serovar]	USA, Maryland	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4Q7	Soil (1976) [plasmid-cured; acrystalliferous; widely used as a recombination host]	Israel	26/26	TH, H, K, CS, P
B.thuringiensis HD789			26/26	TH, H, K, CS, P
B.thuringiensis ATCC35646	Other, raw sewage pond (1977)	Israel, Kibbutz Hulda	21/24	CS, adk, ccpa, ftsa, glpt, gmk, ilvd, mbl, muts, pta, purh, pyca1, pyca2, pyre, recf, rpob
B.thuringiensis T05a030	Soil (1987)	Iraq	7/7	P
B.thuringiensis IBL3241	Soil (1986)	Norway	7/7	P
B.thuringiensis IBL117	Soil (1983)	USA, Wyoming	7/7	P
B.thuringiensis IBL184	Soil (1986)	USA, Washington D.C.	7/7	P
B.thuringiensis CCCT2259	(1993)	Brazil	7/7	P
B.thuringiensis IBL416	Soil (1985)	China	7/7	P
B.thuringiensis BGSC4Q3	Animal, Insect, Culicidae (Mosquitoes)	Israel	7/7	P
B.thuringiensis IBL621	Soil (1987)	Egypt	7/7	P
B.thuringiensis IBL431	Soil (1985)	Spain	7/7	P
B.thuringiensis T08025	Other, grain silo dust (1988)	France	7/7	P
B.thuringiensis IBL439	Soil (1985)	Morocco	7/7	P
B.thuringiensis DSM5815	Soil, sandy loam garden soil	USA	7/7	P
B.thuringiensis KBBC1	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBD6	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBG4	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBD7	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBG5	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBE4	Soil, Forest soil (2000)	France, Versailles	6/6	CS

2 isolate(s) sharing MLST alleles in supercluster 48

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus S6616	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6570a	Soil (2007)	USA, Maryland, Rockville	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 49

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.toyonensis AFS015017	Plant, Corn core (2014)	USA, Illinois	21/26	CS, P, ccpa, ftsa, glpt, gyrb, mdh, muts, pyca1, succ
B.toyonensis AFS071669	Plant, Corn core (2014)	USA, Illinois	21/26	CS, P, ccpa, ftsa, glpt, gyrb, mdh, muts, pyca1, succ

2 isolate(s) sharing MLST alleles in supercluster 50

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 140099.D	Human, wound infection (2005)	UK, Scotland	7/7	P
B.cereus SPS2	Other, kaolin (1999)		7/7	P

2 isolate(s) sharing MLST alleles in supercluster 51

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus Bc219		Brazil	7/7	P
B.cereus LFB1131	Animal, Insect	Czechoslovakia	7/7	P

11 isolate(s) sharing MLST alleles in supercluster 52

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.wiedmannii AFS011149	Plant, Soybean leaf (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.wiedmannii AFS074234	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.wiedmannii AFS079268	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.wiedmannii AFS009340	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.wiedmannii AFS024429	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.wiedmannii AFS013151	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.wiedmannii AFS000938	Plant, Corn core (2014)	USA, Illinois	25/26	TH, H, CS, P, gyrb, mbl, mdh, muts, rpob
B.wiedmannii AFS029838	Plant, Corn core (2014)	USA, Illinois	25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.wiedmannii AFS064234	Plant, Soybean core (2014)	USA, Iowa	25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.wiedmannii AFS023251	Plant, Soybean core (2014)	USA, Iowa	25/26	TH, H, K, P, clpc, dinb, gdpd, yhfl
B.wiedmannii AFS034073	Plant, Soybean core (2014)	USA, Iowa	25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob

10 isolate(s) sharing MLST alleles in supercluster 53

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis IBL3780	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3785	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3729	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3776	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3689	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3760	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3725	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3779	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3719	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3781	Soil (2009)	USA, Maryland	7/7	P

8 isolate(s) sharing MLST alleles in supercluster 54

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus HWW274-2	Dairy products, Milk powder (2004)	Germany	26/26	TH, H, K, CS, P
B.cereus FSLW8-0275	Dairy products, Raw liquid milk and whey perm (2012)	USA, New York	26/26	TH, H, K, CS, P
B.cereus B4087	Food, pea soup (2012)	Netherlands	25/26	TH, H, K, P, dinb, gdpd, purf, yhfl
B.c_group HZ15-64	Food, rice (2016)	China, Shanxi Province	7/7	P
B.cereus HZ15-Y105	Food, pasta (2015)	China, Shaanxi Province	7/7	P
B.cereus 2012-41	Dairy products, milk products	China	7/7	P
B.cereus HZ15-Y066	Food (2015)	China, Shaanxi Province	7/7	P
B.cereus HZ15-Y064	Food (2015)	China, Shaanxi Province	7/7	P

19 isolate(s) sharing MLST alleles in supercluster 55

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.wiedmannii FSLM7-0938	Dairy products, raw milk (2011)	USA, New York	26/26	TH, H, K, CS, P
B.wiedmannii FSLH8-0032	Dairy food in process (2005)	USA, New York	26/26	TH, H, K, CS, P
B.wiedmannii AFS052419	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.wiedmannii FSLH7-0353	Food, finished ready-to-eat dairy food product (2005)	USA, New York	26/26	TH, H, K, CS, P
B.wiedmannii FSLM7-1251	Dairy products, raw milk (2011)	USA, New York	26/26	TH, H, K, CS, P
B.wiedmannii FSLW8-0169	Dairy products, Raw milk (2012)	USA, New York	24/26	H, CS, glpf, gmk, gyrb, ilvd, mdh, muts, purh, pyca1, pyca2, rpob, tpi
B.wiedmannii MOD1Bc223	Food, food product (2016)	USA, Maryland	24/26	K, CS, P, adk, ftsa, glpt, recf, succ
B.cereus KPR-7A			24/26	TH, H, CS, gmk, gyrb, ilvd, mdh, muts, pyca1, rpob, tpi
B.c_group BAG5X2-1	Soil	USA, Massachusetts, Boston	24/26	TH, H, CS, gyrb, ilvd, mdh, muts, purh, pyca1, rpob, tpi
B.wiedmannii FSLM7-0044	Dairy products, raw milk (2011)	USA, New York	23/26	TH, H, K, clpc, dinb, gdpd, gmk, tpi, yhfl
B.cereus INRASAp			23/26	TH, H, P, clpc, dinb, gyrb, mdh, muts, purf, pyca1, rpob
B.cereus 14294-3	Food, ice cream (2004)	Germany	23/26	TH, CS, P, ftsa, gyrb, mdh, pyca1, recf, rpob, succ
B.wiedmannii FSLP2-0558	Dairy food in process (2009)	USA, New York	23/26	TH, H, P, clpc, dinb, gdpd, gyrb, mdh, muts, pyca1, rpob
B.wiedmannii FSLP4-0569	Dairy food in process (2010)	USA, New York	22/26	CS, ccpa, ftsa, glpf, gmk, gyrb, mdh, muts, pta, purh, pyca1, pyca2, pyre, recf, rpob, succ, tpi
B.c_group AH519	Soil, strawberry field (1993)	Norway, Moss	11/11	TH, H
B.c_group AH572	Soil, beech grove (1993)	Norway, Moss	11/11	TH, H
B.c_group AH536	Soil, strawberry field (1993)	Norway, Moss	11/11	TH, H
B.thuringiensis PLBB54/4	Soil (2012)	Poland	7/7	P
B.thuringiensis PLBB08/1	Soil (2012)	Poland	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 56

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus MOD1Bc229	Food, food product (2016)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MOD1Bc222	Food, food product (2016)	USA, Maryland	26/26	TH, H, K, CS, P

4 isolate(s) sharing MLST alleles in supercluster 57

Strain	Source	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus ISSFR-3F	Other, Air (2011)	26/26	TH, H, K, CS, P
B.cereus JEM-2	Other, Surface (2009)	26/26	TH, H, K, CS, P
B.cereus ISSFR-9F	Other, Air (2011)	26/26	TH, H, K, CS, P
B.cereus ISSFR-23F	Other, Air from the International Space Station (ISS) (2011)	25/25	H, K, P, clpc, dinb, gdpd, purf, yhfl

3 isolate(s) sharing MLST alleles in supercluster 58

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus NC401	Food (1982)	Japan	7/7	P
B.cereus m1280	Food, vegetable soup (1987)	Brazil	7/7	P
B.cereus WSBC10249	Soil (1999)	Denmark	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 59

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group BGSC4AZ2			7/7	P
B.c_group KW23	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.thuringiensis BGSC4AZ1	(1984)	Czechoslovakia	7/26	P

19 isolate(s) sharing MLST alleles in supercluster 60

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.pseudomycoides AFS013396	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.pseudomycoides AFS074367	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.pseudomycoides AFS058668	Soil (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.pseudomycoides AFS055788	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.pseudomycoides AFS074519	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS042788	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides FSLH8-0534	Soil (2006) [soil adjacent to bovine farm]	USA	26/26	TH, H, K, CS, P
B.pseudomycoides AFS028766	Plant, Corn plant (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.pseudomycoides AFS040883	Soil (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.pseudomycoides AFS098856	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.pseudomycoides AFS003288	Plant, Corn leaf (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.pseudomycoides AFS092115	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.pseudomycoides AFS084126	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.pseudomycoides AFS008599	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides DSM12442	Soil	Ghana or Sweden or USA	26/26	TH, H, K, CS, P
B.pseudomycoides AFS048805	Plant, Corn core (2014)	USA, Illinois	25/26	TH, H, K, P, clpc, dinb, gdpd, purf
B.pseudomycoides AFS037117	Soil (2014)	USA, Iowa	25/26	TH, H, K, P, clpc, dinb, gdpd, yhfl
B.pseudomycoides AFS054473	Plant, Corn core (2014)	USA, North Carolina	21/26	H, clpc, gdpd, glpf, gmk, gyrb, mbl, mdh, panc, purf, purh, pyca1, pyca2, rpob, yhfl
B.c_group FSLK6-0220	Animal, cattle	USA	7/7	P

28 isolate(s) sharing MLST alleles in supercluster 61

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.wiedmannii AFS014747	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.wiedmannii AFS057001	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.wiedmannii AFS053866	Plant, Corn leaf (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.cereus RIVMBC126#1	Human, faeces/stools (1999) [diarrheal food poisoning; two complete genomes sequenced for this strain with different MLST sequences; strain sequenced by INRA-MIG, Unit MIG (Mathematique, Informatique et Genome), Jouy en Josas, France; sequences conflicting with isolate RIVMBC126#2]	Netherlands	26/26	TH, H, K, CS, P
B.wiedmannii AFS050757	Plant, Soybean root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.wiedmannii AFS022373	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.wiedmannii RIVMBC126#2	Human, faeces/stools (1999) [diarrheal food poisoning; two complete genomes sequenced for this strain with different MLST sequences; strain sequenced by Lehrstuhl fuer Mikrobielle Oekologie, Technische Universitaet Muenchen, Freising, Germany; sequences conflicting with isolate RIVMBC126#1]	Netherlands	26/26	TH, H, K, CS, P
B.wiedmannii AFS026518	Plant, soybean seed (2014)	USA, Iowa	25/26	TH, H, K, P, clpc, dinb, gdpd, yhfl
B.wiedmannii AFS061931	Soil (2014)	USA, New York	25/26	TH, H, K, CS, gmk, purh, tpi
B.wiedmannii AFS029692	Plant, core (2014)	USA, North Carolina	25/26	H, K, CS, gmk, ilvd, pta, purh, pyca2, tpi
B.cereus AFS034338	Plant, Core Other Plant (2014)	USA, North Carolina	25/26	H, K, CS, gmk, ilvd, pta, purh, pyca2, tpi
B.wiedmannii AFS020690	Food, Mushroom (2013)	USA, Iowa	25/26	TH, H, K, CS, gmk, ilvd, purh
B.wiedmannii AFS029396	Plant, Corn core (2014)	USA, Illinois	25/26	TH, H, CS, P, gyrb, mbl, mdh, muts, rpob
B.wiedmannii AFS018713	Plant, Corn (2014)	USA, Iowa	25/26	TH, H, CS, P, mbl, mdh, muts, pyca1, rpob
B.wiedmannii AFS063010	(2014)	USA, North Carolina	24/26	H, K, CS, glpf, ilvd, purh, pyca2, tpi
B.wiedmannii AFS080672	Soil (2014)	USA, New York	24/26	H, K, clpc, gdpd, gmk, ilvd, panc, pta, purf, purh, pyca2, tpi, yhfl
B.wiedmannii AFS078322	Soil (2014)	USA, New York	24/26	TH, H, P, clpc, dinb, gdpd, gyrb, mdh, muts, purf, pyca1, rpob
B.wiedmannii AFS045501	Soil (2014)	USA, New York	24/26	TH, H, K, P, clpc, purf, yhfl
B.wiedmannii AFS048126	Plant, Corn root (2014)	USA, Iowa	24/26	H, K, CS, glpf, gmk, ilvd, pyca2, tpi
B.wiedmannii AFS006440	Plant, Soybean core (2014)	USA, Iowa	24/26	H, P, clpc, dinb, gdpd, gyrb, mdh, muts, purf, pyca1, rpob, yhfl
B.wiedmannii AFS045844	Plant, core (2014)	USA, North Carolina	24/26	TH, H, CS, gmk, gyrb, mbl, mdh, purh, pyca1, rpob, tpi
B.wiedmannii AFS002659	Soil (2014)	USA, New York	23/26	K, CS, adk, ccpa, ftsa, glpf, gmk, ilvd, pta, purh, pyca2, recf, succ
B.wiedmannii AFS017127	Plant, core (2014)	USA, North Carolina	23/26	TH, H, CS, gmk, gyrb, mbl, mdh, muts, rpob, tpi
B.wiedmannii AFS009197	Soil (2014)	USA, New York	22/26	TH, H, K, clpc, dinb, gmk, ilvd, purh
B.wiedmannii AFS010157	Plant, Corn core (2014)	USA, Illinois	21/26	TH, K, dinb, ftsa, gmk, purf, purh, recf, tpi, yhfl
B.wiedmannii AFS077115	Soil (2014)	USA, New York	19/26	H, clpc, gmk, gyrb, ilvd, mdh, muts, panc, pta, pyca1, rpob, tpi, yhfl
B.wiedmannii AFS066156	Plant, core (2014)	USA, North Carolina	19/26	H, clpc, dinb, gmk, gyrb, mbl, mdh, muts, panc, pta, purh, pyca1, pyca2
B.thuringiensis IBL3720	Soil (2009)	USA, Maryland	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 62

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis Bt183		Brazil	7/7	P
B.thuringiensis LFB858	Food, black pepper (1994)	Brazil	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 63

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group KW25	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.thuringiensis T24001		Mexico	7/7	P

6 isolate(s) sharing MLST alleles in supercluster 64

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus BC_19	Food, egg product (2006)	Italy (Southern)	7/7	P
B.cereus BC_2	Food, egg product (2006)	Italy (Southern)	7/7	P
B.cereus BC_6	Food, egg product (2006)	Italy (Southern)	7/7	P
B.cereus BC_16	Food, egg product (2006)	Italy (Southern)	7/7	P
B.cereus BC_23	Food, egg product (2006)	Italy (Southern)	7/7	P
B.cereus BC_15	Food, egg product (2006)	Italy (Southern)	7/7	P

5 isolate(s) sharing MLST alleles in supercluster 65

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS024404	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS026312	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS034468	Soil (2014)	USA, New York	25/26	H, K, CS, gmk, ilvd, pta, purh, pyca2, tpi
B.cereus AFS080704	Plant, core (2014)	USA, North Carolina	24/26	H, K, CS, gmk, pta, purh, pyca2, tpi
B.cereus AFS014678	Soil (2014)	USA, New York	24/26	TH, H, CS, gyrb, ilvd, mdh, muts, purh, pyca1, rpob, tpi

4 isolate(s) sharing MLST alleles in supercluster 66

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group B4o6	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.cereus S6621	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.c_group A4o6	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group B4o1	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P

6 isolate(s) sharing MLST alleles in supercluster 67

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus NVH0597/99	Food, spice mix (1999) [strain believed to be the cause of a diarrheal food poisoning outbreak]	Norway	26/26	TH, H, K, CS, P
B.cereus MOD1Bc122	Food, Paprika (2015)	USA, Maryland	26/26	TH, H, K, CS, P
B.anthracis RIT375	Plant, Insulin plant/Spiral flag (Costus igneus) Internal Stem Tissue (2015)	Puerto Rico	24/26	TH, CS, P, ftsa, gyrb, mdh, muts, pyca1, pyre, rpob, succ
B.cereus B5780	Human, blood (1970)	USA, Texas	7/7	P
B.cereus 191560.K	Human, calf tissue (2003) [human wound infection following insect bite]	UK, Scotland, Glasgow	7/7	P
B.cereus B06_020	Human, wound	France	7/7	TH

4 isolate(s) sharing MLST alleles in supercluster 68

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.toyonensis AFS045425	Plant, Soybean leaf (2014)	USA, Missouri	26/26	TH, H, K, CS, P
B.toyonensis AFS061268	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.toyonensis AFS044782	Plant, Soybean leaf (2014)	USA, Iowa	23/26	H, CS, glpf, gmk, gyrb, ilvd, mdh, muts, purh, pyca1, pyca2, tpi
B.toyonensis AFS096303	Plant, Soybean leaf (2014)	USA, Minnesota	21/26	H, clpc, dinb, glpf, gmk, gyrb, ilvd, mdh, muts, panc, purh, pyca1, pyca2, rpob, yhfl

2 isolate(s) sharing MLST alleles in supercluster 69

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS046754	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS079194	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P

2 isolate(s) sharing MLST alleles in supercluster 70

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus B06_025	Human, blood	Guyane	7/7	TH
B.cereus B06_031	Human	Martinique	7/7	TH

3 isolate(s) sharing MLST alleles in supercluster 71

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 1Y58	Dairy products, milk products (2016)	China, Shaanxi Province	7/7	P
B.cereus 1Y55	Dairy products, milk products (2016)	China, Shaanxi Province	7/7	P
B.cereus 5L45	Dairy products, milk products (2016)	China, Shaanxi Province	7/7	P

12 isolate(s) sharing MLST alleles in supercluster 72

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus Rock3-28	Soil	USA, Maryland, Rockville	23/25	K, P, adk, ccpa, clpc, dinb, ftsa, gdpd, panc, pyre, succ, yhfl
B.toyonensis BacAer	Human, biopsy of an epithelial lesion	Brazil, Rio de Janeiro	23/26	K, P, adk, ccpa, clpc, dinb, ftsa, gdpd, panc, pyre, succ, yhfl
B.cereus S6623	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus BFDA96174	(2007)	Taiwan, Hsinchu city	7/7	P
B.cereus S6618	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6620	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6563	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6563a	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6576	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6645	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus CCBH7517	(2011)	Brazil, Rio de Janeiro	7/7	P
B.cereus S6603	Soil (2007)	USA, Maryland, Rockville	7/7	P

7 isolate(s) sharing MLST alleles in supercluster 73

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS067272	Plant, Weed plant (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS077416	Plant, Weed plant (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS016912	Plant, core (2014)	USA, North Carolina	24/26	TH, H, CS, P, gyrb, mdh, pyca1, rpob
B.cereus AFS068308	Plant, tree leaf (2014)	USA, North Carolina	23/26	TH, H, K, clpc, dinb, gdpd, gmk, ilvd, purf
B.cereus AFS030055	Plant, tree leaf (2014)	USA, North Carolina	22/26	CS, P, adk, ftsa, glpt, gyrb, pyca1, pyre, recf, rpob, succ
B.cereus AFS074395	Plant, tree leaf (2014)	USA, North Carolina	21/26	H, clpc, gdpd, gmk, gyrb, ilvd, mdh, muts, panc, purf, purh, pyca1, pyca2, rpob, tpi
B.cereus Rock3-44	Soil	USA, Maryland, Rockville	18/25	TH, clpc, gdpd, gmk, gyrb, purf, purh, pyca1, recf, rpob, succ, tpi

2 isolate(s) sharing MLST alleles in supercluster 74

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis Bt152		Brazil	7/7	P
B.thuringiensis LFB563	Soil	Brazil	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 75

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus BFDA96167	Food, rice (2007)	Taiwan, Taipei county	7/7	P
B.cereus BFDA96161	Food, rice (2007)	Taiwan, Taipei county	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 76

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis HBF-18	Soil (2003)	China, Hebei, Baoding	26/26	TH, H, K, CS, P
B.thuringiensis Fcd114	Soil (2003)	China, Hebei, Baoding	26/26	TH, H, K, CS, P

2 isolate(s) sharing MLST alleles in supercluster 77

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS010695	Soil (2014)	USA, North Carolina	19/26	TH, ftsa, gdpd, gmk, gyrb, muts, purf, purh, pyca1, pyre, rpob, succ, tpi
B.c_group BAG2X1-3	Soil	USA, Massachusetts, Boston	19/26	TH, ftsa, gdpd, gmk, gyrb, muts, purf, purh, pyca1, pyre, rpob, succ, tpi

48 isolate(s) sharing MLST alleles in supercluster 78

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS025909	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS003338	Plant, Corn (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS031264	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS004748	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS077972	Plant, Soybean root (2013)	USA, Minnesota	26/26	TH, H, K, CS, P
B.cereus AFS025485	Plant, Corn (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS007868	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS086892	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS037584	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.cereus AFS040984	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.cereus AFS020233	Plant, Corn root (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.cereus AFS032151	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS014847	Plant, Corn (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS000144	Plant, Corn (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS028514	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.cereus AFS063866	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS074370	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS028516	Plant, Corn leaf (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.cereus AFS027898	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS011202	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS094413	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS026439	Plant, Soybean root (2014)	USA, Missouri	26/26	TH, H, K, CS, P
B.cereus AFS023425	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS047135	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS051030	(2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS009443	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.cereus AFS082524	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS050653	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS008423	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS095084	Plant, Soybean root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS036159	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS060621	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS024540	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS006340	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS079942	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS000175	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS017700	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS024847	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS048756	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS007234	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS046388	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS091626	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS019247	Plant, Corn (2014)	USA, Iowa	25/26	TH, H, K, P, clpc, gdpd, purf, yhfl
B.cereus AFS074868	Plant, Corn leaf (2014)	USA, Iowa	25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.cereus AFS065445	Plant, Corn core (2014)	USA, North Carolina	19/26	CS, adk, ccpa, ftsa, glpt, gyrb, mdh, muts, pta, purh, pyca1, pyca2, pyre, recf
B.cereus 163770.K	Human, wound infection (2005)	UK, Scotland	7/7	P
B.cereus F5157	Food (1983) [diarrheal food poisoning]	USA, California	7/7	P
B.cereus ATCC6464	Soil		6/6	CS

10 isolate(s) sharing MLST alleles in supercluster 79

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS041242	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.c_group BAG2O-3	Soil	USA, Massachusetts, Boston	26/26	TH, H, K, CS, P
B.c_group B5-2	Soil	China	26/26	TH, H, K, CS, P
B.cereus AFS047977	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS077649	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS069564	Plant, Corn root (2013)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS086766	(2014)	USA, North Carolina	25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.cereus AFS038165	Soil (2014)	USA, New York	25/26	K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus AFS040108	Plant, Oats plant (2014)	USA, North Carolina	24/26	TH, H, CS, P, mdh, muts, pyca1, rpob
B.cereus AFS009781	Soil (2014)	USA, New York	23/26	H, CS, glpf, gmk, gyrb, ilvd, muts, purh, pyca1, pyca2, rpob, tpi

3 isolate(s) sharing MLST alleles in supercluster 80

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus BC_20	Food, egg product (2006)	Italy (Southern)	7/7	P
B.cereus BC_22	Food, egg product (2006)	Italy (Southern)	7/7	P
B.cereus BC_13	Food, egg product (2006)	Italy (Southern)	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 81

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 644-715-5	Human, blood (2003) [human pyrexia]	Japan	7/7	P
B.cereus BCT1		Japan	7/7	P
B.cereus BCT2		Japan	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 82

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis K15_252	(2015)	Korea (South)	7/7	P
B.cereus F2404B/79	(1979) [diarrheal food poisoning outbreak]		7/26	P

3 isolate(s) sharing MLST alleles in supercluster 83

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 58R4	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. hereward grown in a plot in which the previous crop was wheat (Triticum aestivum) var. cadenza]	UK, England, Rothamsted	7/7	P
B.c_group D10-6.A.i	Soil (2006)	UK	7/7	P
B.cereus 58R2	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. hereward grown in a plot in which the previous crop was wheat (Triticum aestivum) var. cadenza]	UK, England, Rothamsted	7/7	P

7 isolate(s) sharing MLST alleles in supercluster 84

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis BGSC4Y1	Other, soil or litter of silkworm (Bombyx mori)	Japan	26/26	TH, H, K, CS, P
B.cereus 6113	Human, vomit (2016)	China	26/26	TH, H, K, CS, P
B.thuringiensis XL6	Soil (2006)	China, Inner Mongolia	26/26	TH, H, K, CS, P
B.cereus AR156	Soil, garden soil (2008)	China	23/26	K, CS, P, ccpa, ftsa, pyre, recf
B.cereus MOD1Bc81	Food, Whole Black Pepper (2015)	USA, Maryland	18/26	P, adk, ccpa, clpc, dinb, ftsa, gdpd, pyca1, pyre, recf, succ, yhfl
B.thuringiensis KB1	Plant, thale cress (Arabidopsis thaliana) apoplast (2012)	Korea (South), Daejeon	17/26	K, clpc, dinb, ftsa, glpf, ilvd, panc, pta, purf, purh, pyre, tpi
B.cereus BFDA96164	Food, rice (2007)	Taiwan, Taipei county	7/7	P

8 isolate(s) sharing MLST alleles in supercluster 85

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis BGSC4AC1	Soil (1988)	Mexico	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4AJ1	[produces a polyglutamate capsule resembling that of B.anthracis; two complete genomes sequenced for this strain with identical MLST sequences]	Mexico	26/26	TH, H, K, CS, P
B.c_group AH820	Human, periodontitis (1995)	Norway, Akershus	23/26	TH, H, P, clpc, dinb, gdpd, gyrb, mdh, purf, pyca1, rpob
B.c_group AH818	Human, periodontitis (1995)	Brazil, Curitiba	11/11	TH, H
B.c_group AH816	Human, periodontitis (1995)	Norway, Akershus	11/11	TH, H
B.c_group AH813	Human, periodontitis (1995)	Brazil, Curitiba	11/11	TH, H
B.cereus S6598	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus BFDA96119	Food (2007)	Taiwan, Yilan county	7/7	P

18 isolate(s) sharing MLST alleles in supercluster 86

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS016726	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS022238	Food, Mushroom (2013)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS010456	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS022362	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS054043	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS000393	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS071406	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS048418	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS050681	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS091954	Soil (2014)	USA, New York	25/26	TH, K, CS, P, pyre, recf, succ
B.cereus AFS039926	Soil (2014)	USA, New York	25/26	TH, H, CS, P, gyrb, mbl, mdh, muts, rpob
B.cereus AFS017202	Plant, Corn root (2014)	USA, Iowa	25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.cereus AFS086955	Soil (2014)	USA, New York	25/26	TH, H, K, CS, gmk, ilvd, purh
B.cereus AFS070292	Soil (2014)	USA, New York	25/26	H, K, CS, glpf, gmk, ilvd, purh, pyca2, tpi
B.c_group BAG3X2-1	Soil	USA, Massachusetts, Boston	25/26	TH, H, K, P, clpc, dinb, gdpd, purf
B.cereus AFS085854	Soil (2014)	USA, New York	23/26	H, CS, glpf, gmk, gyrb, ilvd, mdh, muts, purh, pyca2, rpob, tpi
B.cereus AFS055677	Soil (2014)	USA, Iowa	23/26	H, CS, glpf, gmk, gyrb, ilvd, mdh, muts, purh, pyca2, rpob, tpi
B.cereus AFS026918	Soil (2014)	USA, New York	20/26	CS, ccpa, ftsa, glpf, gmk, gyrb, ilvd, mdh, muts, pyca2, pyre, recf, rpob, succ, tpi

23 isolate(s) sharing MLST alleles in supercluster 87

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.toyonensis AFS047230	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS069354	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS033534	Plant, Soybean leaf (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS020202	Plant, Weed plant (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.toyonensis AFS072674	Plant, Soybean leaf (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS011667	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS074602	Plant, Soybean leaf (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS000753	Plant, Soybean leaf (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS075176	Plant, Corn leaf (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS070352	Plant, Soybean leaf (2014)	USA, Iowa	25/26	TH, H, K, P, clpc, dinb, gdpd, purf
B.toyonensis AFS061925	Plant, Corn root (2014)	USA, Iowa	25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.toyonensis AFS032951	Soil (2014)	USA, Iowa	25/26	H, K, CS, glpf, gmk, ilvd, purh, pyca2, tpi
B.toyonensis AFS072125	Plant, Soybean leaf (2014)	USA, Iowa	25/26	TH, K, CS, P, ftsa, pyre, succ
B.toyonensis AFS005430	Plant, soybean seed (2014)	USA, Iowa	24/26	K, CS, P, adk, ftsa, glpt, recf, succ
B.toyonensis AFS038153	Plant, core (2014)	USA, North Carolina	24/26	TH, H, P, clpc, gdpd, mbl, mdh, muts, purf, pyca1, rpob, yhfl
B.toyonensis AFS076931	Soil (2014)	USA, Iowa	23/26	H, CS, gmk, gyrb, ilvd, mdh, muts, pta, purh, pyca2, rpob, tpi
B.toyonensis AFS077622	Plant, Soybean core (2014)	USA, Iowa	23/26	TH, P, clpc, ftsa, gdpd, gyrb, mdh, muts, purf, pyca1, recf, rpob, succ, yhfl
B.toyonensis AFS021654	Plant, Soybean core (2014)	USA, Iowa	23/26	H, CS, gmk, gyrb, ilvd, mdh, muts, pta, purh, pyca1, rpob, tpi
B.toyonensis AFS089278	Plant, core (2014)	USA, North Carolina	22/26	H, K, P, gdpd, purf
B.toyonensis AFS054461	Soil (2014)	USA, Iowa	22/26	P, adk, ccpa, clpc, ftsa, gdpd, gyrb, mdh, muts, panc, purf, pyca1, recf, rpob, succ, yhfl
B.toyonensis AFS010752	Plant, core (2014)	USA, North Carolina	21/26	CS, adk, ccpa, ftsa, glpt, gmk, gyrb, ilvd, mdh, muts, pta, purh, pyca1, pyre, rpob, succ
B.cereus S6597	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.thuringiensis PLJAS42/3	Soil (2012)	Poland	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 88

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis BGSC4M3#1	(1968) [two complete genomes sequenced for this strain with different MLST sequences and origins; strain sequenced by State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, Hubei, China; sequences conflicting with isolate BGSC4M3#2]	UK, England	26/26	TH, H, K, CS, P
B.thuringiensis BMB171	Other, acrystalliferous mutant derived from B.thuringiensis kurstaki strain YBT-1463 cured of the insecticidal toxin plasmid at Huazhong Agricultural University	China, Wuhan	26/26	TH, H, K, CS, P
B.cereus 156429.N	Human, wound infection (2004)	UK, Scotland	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 89

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group A3m1	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group A3g1	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 90

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group S10A	Other, human or soil from unidentified epidemic disease	Korea	7/7	P
B.c_group Rho	Other, human or soil from unidentified epidemic disease	Korea	7/7	P
B.c_group 11R-1	Other, human or soil from unidentified epidemic disease	Korea	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 91

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis T30001			26/26	TH, H, K, CS, P
B.thuringiensis NRRL23135	Animal, Insect, Culicidae (Mosquitoes) (2013)	UK	26/26	TH, H, K, CS, P

2 isolate(s) sharing MLST alleles in supercluster 92

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis NRRLB-18679	Animal, Insect, Coleoptera (2013)	UK	23/26	H, CS, gmk, gyrb, ilvd, mdh, muts, pta, purh, pyca1, pyca2, rpob
B.wiedmannii AFS026346	Soil (2014)	USA, North Carolina	23/26	H, CS, gmk, gyrb, ilvd, mdh, muts, pta, purh, pyca1, pyca2, rpob

2 isolate(s) sharing MLST alleles in supercluster 93

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group A4m4	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group B4m1	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P

14 isolate(s) sharing MLST alleles in supercluster 94

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS066501	Food, Mushroom (2013)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS031003	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS081153	Food, Mushroom (2013)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS074724	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS019647	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS084744	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS022438	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus F65185	Human, wound (2005) [from an open fracture; encapsulated isolate]	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS086407	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS033400	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS067315	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS061928	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS077084	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS082943	Plant, Corn core (2014)	USA, North Carolina	25/26	TH, K, CS, P, ftsa, recf, succ

3 isolate(s) sharing MLST alleles in supercluster 95

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus KBCB5	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.cereus KBCB6	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.cereus KBCB8	Soil, Forest soil (2000)	France, Versailles	6/6	CS

7 isolate(s) sharing MLST alleles in supercluster 96

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus BDRD-ST196	[Biological Defense Research Directorate (BDRD)]	USA, Maryland, Rockville	26/26	TH, H, K, CS, P
B.weihenstephanensis DSM11821	Dairy products, pasteurized milk (1992) [from the same dairy as isolates WSBC10028, WSBC10029, WSBC10030, WSBC10031, WSBC10042, WSBC10201, WSBC10205, WSBC10206, WSBC10208, and WSBC10211; two complete genomes sequenced for this strain with identical MLST sequences; sequences conflicting with isolate WSBC10204]		26/26	TH, H, K, CS, P
B.c_group D10-23.a.i2	Soil (2006)	UK	7/7	P
B.thuringiensis 1710-S-1	Plant, leaves of clover (Trifolium hybridum) (2004)	UK	7/7	P
B.c_group D10-23.a.i	Soil (2006)	UK	7/7	P
B.cereus 25R3	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. x:19 grown in a plot in which the previous crop was wheat (Triticum aestivum) var. cadenza]	UK, England, Rothamsted	7/7	P
B.c_group A3g4	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 97

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group C3o7	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group A4g1	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P

4 isolate(s) sharing MLST alleles in supercluster 98

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis BGSC4BK1	Soil	Spain	23/26	TH, CS, P, gyrb, mdh, muts, pyca1, recf, rpob, succ
B.thuringiensis BGSC4BV1		Argentina	23/26	TH, CS, P, gyrb, mdh, muts, pyca1, recf, rpob, succ
B.c_group KW48	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.c_group KW60	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 99

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.weihenstephanensis 4405	Food (2005)	UK, England, Leeds	7/7	P
B.c_group VD021	Other, Water from a small pond site	Belgium	7/26	P

8 isolate(s) sharing MLST alleles in supercluster 100

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis BtAlHakam	Other, suspected bioweapons facility	Iraq	26/26	TH, H, K, CS, P
B.thuringiensis HD571		Japan	26/26	TH, H, K, CS, P
B.c_group IV			7/7	P
B.c_group IB		Iraq	7/7	P
B.c_group III		Iraq	7/7	P
B.cereus III-BS	[Pasteur Institute]	France, Paris	7/7	P
B.c_group 003		Iraq	7/7	P
B.cereus III-BL	[Pasteur Institute]	France, Paris	7/7	P

7 isolate(s) sharing MLST alleles in supercluster 101

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cytotoxicus CH38	Food, Mashed potatoes (2014)	Switzerland	25/25	TH, K, CS, P, ftsa, pyre, succ
B.cytotoxicus CH3	Food, Mashed potatoes (2015)	Switzerland	25/25	TH, K, CS, P, ftsa, pyre, succ
B.cytotoxicus CH4	Food, Mashed potatoes (2015)	Switzerland	25/25	TH, K, CS, P, ftsa, pyre, succ
B.cytotoxicus CH39	Food, Mashed potatoes (2014)	Switzerland	25/25	TH, K, CS, P, ftsa, pyre, succ
B.cytotoxicus CH15	Food, Mashed potatoes (2015)	Switzerland	25/25	TH, K, CS, P, ftsa, pyre, succ
B.cytotoxicus NVH0883/00	Food, spices (2000)	Norway	24/25	K, CS, adk, ccpa, ftsa, glpf, glpt, gmk, ilvd, purh, pyca2, pyre, succ, tpi
B.cytotoxicus CH2	Food, Mashed potatoes (2015)	Switzerland	24/25	TH, K, CS, ftsa, gmk, purh, pyre, succ, tpi

9 isolate(s) sharing MLST alleles in supercluster 102

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus BC_49	Dairy products, farm dairy products (2006)	Italy (Northeastern)	7/7	P
B.cereus BC_39	Food, raw fish (2006)	Italy (Northeastern)	7/7	P
B.cereus BC_38	Dairy products, industrial dairy products (2006)	Italy (Northeastern)	7/7	P
B.cereus BC_48	Dairy products, farm dairy products (2006)	Italy (Northeastern)	7/7	P
B.cereus BC_36	Dairy products, industrial dairy products (2006)	Italy (Northeastern)	7/7	P
B.cereus BC_47	Dairy products, farm dairy products (2006)	Italy (Northeastern)	7/7	P
B.cereus BC_33	Dairy products, industrial dairy products (2006)	Italy (Northeastern)	7/7	P
B.cereus BC_46	Dairy products, farm dairy products (2006)	Italy (Northeastern)	7/7	P
B.cereus BC_40	Food, raw fish (2006)	Italy (Northeastern)	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 103

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus KBAA2	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.cereus KBAA6	Soil, Forest soil (2000)	France, Versailles	6/6	CS

11 isolate(s) sharing MLST alleles in supercluster 104

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.anthracis AFS057764	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.anthracis AFS044825	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.anthracis AFS012870	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.anthracis AFS018197	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.anthracis AFS017361	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.anthracis AFS058633	Plant, Corn core (2014)	USA, North Carolina	24/26	TH, H, K, clpc, dinb, gmk, ilvd, purf, tpi, yhfl
B.cereus AFS067103	Plant, Corn core (2014)	USA, North Carolina	21/26	TH, H, dinb, gdpd, gmk, gyrb, ilvd, mdh, muts, pyca1, rpob, tpi
B.cereus AFS093598	Plant, tree leaf (2014)	USA, North Carolina	21/26	H, K, dinb, gdpd, glpf, ilvd, panc, pta, purh, tpi
B.anthracis AFS032297	Soil (2014)	USA, North Carolina	20/26	K, adk, ccpa, dinb, ftsa, gdpd, glpt, ilvd, panc, pta, purf, purh, pyre, recf, tpi
B.anthracis AFS041580	Plant, core (2014)	USA, North Carolina	20/26	TH, dinb, ftsa, gdpd, gmk, gyrb, ilvd, mdh, muts, purf, pyca1, rpob, succ, yhfl
B.cereus AFS021040	Plant, core (2014)	USA, North Carolina	17/26	CS, adk, ccpa, ftsa, ilvd, mdh, purh, pyca1, pyca2, pyre, rpob, succ

5 isolate(s) sharing MLST alleles in supercluster 105

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.pseudomycoides AFS063129	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.pseudomycoides AFS032644	Plant, Corn (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS098564	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS062925	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS039118	Plant, Corn leaf (2014)	USA, Indiana	26/26	TH, H, K, CS, P

2 isolate(s) sharing MLST alleles in supercluster 106

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis T06010	Animal, Insect, Termites (1983)	Pakistan	7/7	P
B.thuringiensis T06007	Animal, Insect,Termites (1983) [sequences conflicting with isolate BGSC4I6]	Pakistan	7/7	P

16 isolate(s) sharing MLST alleles in supercluster 107

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS091573	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS072260	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS018601	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS060152	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS005977	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS039283	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS056613	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS007502	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS083341	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS030086	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS039482	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS056582	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS009143	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS047152	Soil (2014)	USA, New York	25/26	TH, H, K, P, clpc, dinb, gdpd, yhfl
B.cereus AFS053272	Soil (2014)	USA, North Carolina	25/26	TH, H, K, P, clpc, dinb, gdpd, purf
B.cereus AFS084412	Plant, core (2014)	USA, North Carolina	24/26	K, P, adk, ccpa, clpc, dinb, ftsa, gdpd, panc, purf, pyre, recf, succ

2 isolate(s) sharing MLST alleles in supercluster 108

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus BFDA96169	Food, rice (2007)	Taiwan, Taipei county	7/7	P
B.cereus BFDA96165	Food, rice (2007)	Taiwan, Taipei county	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 109

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus YN12BC10	Soil (2012)	China, Yunnan Province	7/7	P
B.cereus AFS049141	Soil (2014)	USA, New York	7/26	P

6 isolate(s) sharing MLST alleles in supercluster 110

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS097219	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS096719	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS006512	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis AFS080155	Plant, Core Corn (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS075012	Plant, Corn core (2014)	USA, North Carolina	23/26	H, CS, gmk, gyrb, ilvd, mdh, muts, purh, pyca1, pyca2, rpob, tpi
B.cereus AFS014679	Plant, core (2014)	USA, North Carolina	14/26	CS, adk, ccpa, glpt, gmk, mdh, purh, pyca1, rpob

2 isolate(s) sharing MLST alleles in supercluster 111

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus FSLH8-0485	Soil (2006)	USA	21/26	H, clpc, dinb, gdpd, glpf, gmk, gyrb, ilvd, mdh, muts, pta, purf, purh, rpob, tpi
B.cereus B4083	Food (2013)	Netherlands	21/26	H, clpc, dinb, gdpd, glpf, gmk, gyrb, ilvd, mdh, muts, pta, purf, purh, rpob, tpi

8 isolate(s) sharing MLST alleles in supercluster 112

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.wiedmannii AFS027394	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.wiedmannii AFS035656	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.wiedmannii AFS012729	Plant, Soybean root (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.wiedmannii AFS071099	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.wiedmannii AFS023094	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.wiedmannii AFS008176	Plant, Corn root (2013)	USA, Minnesota	26/26	TH, H, K, CS, P
B.wiedmannii AFS096149	Plant, Corn grainbin dust (2013)	USA, Iowa	26/26	TH, H, K, CS, P
B.wiedmannii AFS080777	Plant, Soybean leaf (2014)	USA, Minnesota	25/26	H, K, CS, glpf, gmk, ilvd, purh, pyca2, tpi

30 isolate(s) sharing MLST alleles in supercluster 113

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.pseudomycoides AFS022719	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS022598	Plant, Soybean leaf (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS050088	Plant, Corn leaf (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.pseudomycoides AFS081374	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS024482	(2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS003503	Plant, Corn grainbin dust (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS077796	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS018958	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS069374	Soil (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.pseudomycoides AFS087909	(2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS077577	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.pseudomycoides AFS088215	Plant, Corn grainbin dust (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS032210	Plant, Weed leaf (2014)	USA, Ohio	26/26	TH, H, K, CS, P
B.pseudomycoides AFS095135	Plant, leaf (2014)	USA, Indiana	26/26	TH, H, K, CS, P
B.pseudomycoides AFS064122	Other, excrement (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS086794	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS037265	Plant, Soybean leaf (2014)	USA, Missouri	26/26	TH, H, K, CS, P
B.pseudomycoides AFS045932	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.pseudomycoides AFS062349	Plant, Corn (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.pseudomycoides AFS000230	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS062254	Plant, Corn leaf (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.pseudomycoides AFS026185	Plant, Corn (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.mycoides Rock1-4	Soil	USA, Maryland, Rockville	26/26	TH, H, K, CS, P
B.pseudomycoides AFS080834	Plant, Weed leaf (2014)	USA, Ohio	25/26	H, K, CS, glpf, gmk, ilvd, purh, pyca2, tpi
B.pseudomycoides AFS058374	Plant, Soybean core (2014)	USA, Iowa	25/26	H, K, CS, glpf, gmk, ilvd, purh, pyca2, tpi
B.mycoides Rock3-17	Soil	USA, Maryland, Rockville	25/26	TH, H, K, P, clpc, dinb, gdpd, purf
B.pseudomycoides AFS022050	Plant, Corn core (2014)	USA, Illinois	25/26	TH, H, K, CS, gmk, ilvd, tpi
B.pseudomycoides AFS093408	Plant, leaf (2014)	USA, Indiana	25/26	TH, H, CS, P, mbl, mdh, muts, pyca1, rpob
B.pseudomycoides AFS095604	Plant, Soybean core (2014)	USA, Iowa	24/26	TH, H, CS, P, gyrb, mdh, muts, pyca1
B.c_group KW57	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P

6 isolate(s) sharing MLST alleles in supercluster 114

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 3a	[Food Research Institute, University of Wisconsin-Madison]	USA, Wisconsin, Madison	26/26	TH, H, K, CS, P
B.cereus F95/8201	Human, endocarditis; Prince Charles Hospital (1995)	UK, Wales, Merthyr Tydfil	26/26	TH, H, K, CS, P
B.cereus PE8-121b	Animal, marine sponge (Spongia sp.) (2013)	South Africa, Algoa Bay, White Sands Reef, Indian Ocean, Port Elizabeth	26/26	TH, H, K, CS, P
B.cereus S2-8	Soil (1993) [University of Wisconsin-Madison]	USA, Wisconsin, Madison	26/26	TH, H, K, CS, P
B.cereus PE5-132	Animal, marine sponge (Waltherarndtia caliculatum) (2013)	South Africa, Algoa Bay, White Sands Reef, Indian Ocean, Port Elizabeth	15/19	P, adk, clpc, dinb, gdpd, panc, purf, recf, rpob
B.cereus D4088	Human, blood (1975)	USA, Colorado	7/7	P

10 isolate(s) sharing MLST alleles in supercluster 115

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus M3	Food, Korean fermented food (2016)	Korea (South)	26/26	TH, H, K, CS, P
B.cereus SJ-S25	Human	USA, Tennessee, Memphis	26/26	TH, H, K, CS, P
B.cereus MOD1Bc112	Other, Powdered Infant Formula (2015)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus SJ-S7	Human	USA, Tennessee, Memphis	25/26	TH, K, CS, P, ftsa, pyre, recf
B.cereus DSM2302	Food poisoning incident (1980)	Canada, Ontario, Toronto	19/26	TH, H, P, clpc, dinb, gyrb, muts
B.cereus SJ-S20	Human	USA, Tennessee, Memphis	13/25	H, clpc, glpf, gmk, gyrb, pta, pyca2
B.cereus B366	[German Armed Forces (Bundeswehr) Institute of Microbiology]	Germany, Munich	7/7	H
B.cereus BGSC6A71	Food (2003) [sequences conflicting with isolate MM_3]	USA	7/7	P
B.cereus MM_4	Food (2003)	USA	7/7	P
B.c_group K14_1749	(2014)	Korea (South)	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 116

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 2013-8	Dairy products, milk products	China	7/7	P
B.cereus MOD1Bc110	Other, Oxytetracycline Medicated Fish Feed (2007)	USA, Maryland	7/26	P

2 isolate(s) sharing MLST alleles in supercluster 117

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.weihenstephanensis MC118	Soil, mud [emetic toxin/cereulide producer]	Denmark	26/26	TH, H, K, CS, P
B.weihenstephanensis MC67	Soil, mud [emetic toxin/cereulide producer]	Denmark	26/26	TH, H, K, CS, P

3 isolate(s) sharing MLST alleles in supercluster 118

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.pseudomycoides AFS090208	Plant, Corn grainbin dust (2013)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS009643	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS048537	Plant, Soybean core (2014)	USA, Iowa	25/26	TH, K, CS, P, ftsa, pyre, recf

5 isolate(s) sharing MLST alleles in supercluster 119

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group MCCC1A06378	Other, sediments (2009)	Gulf of Mexico	7/7	P
B.c_group MCCC1A00365	Other, sediments (2006)	Pacific Ocean	7/7	P
B.c_group MCCC1A06374	Other, sediments (2010)	Gulf of Mexico	7/7	P
B.c_group MCCC1A06375	Other, sediments (2010)	Gulf of Mexico	7/7	P
B.c_group MCCC1A06376	Other, sediments (2009)	Gulf of Mexico	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 120

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group MCCC1A02161	Other, sediments (2006)	South China Sea	7/7	P
B.anthracis N1ZF-2	Other, Sediments (2002)	China, South China Sea	7/26	P

3 isolate(s) sharing MLST alleles in supercluster 121

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus KBCE3	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.cereus KBCE4	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.cereus KBCD8	Soil, Forest soil (2000)	France, Versailles	6/6	CS

3 isolate(s) sharing MLST alleles in supercluster 122

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis IBL1677	Soil (1983)	USA, Wyoming	7/7	P
B.c_group KW36	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.thuringiensis BGSC4I4	Animal, Insect, stored nut moth (Paralipsa gularis) (1958) [two complete genomes sequenced for this strain with identical MLST sequences]	Canada	7/26	P

6 isolate(s) sharing MLST alleles in supercluster 123

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS079368	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS055402	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS046104	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS096926	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS016962	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis IBL3679	Soil (2009)	USA, Maryland	7/7	P

4 isolate(s) sharing MLST alleles in supercluster 124

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group VD048	Soil	Greenland	15/26	TH, H, P
B.c_group AH663	Soil, woodland soil (1994)	Norway, Brekkvasselv	11/11	TH, H
B.c_group AH632	Soil, heather soil (1994)	Norway, Singsaas/Saetereng	10/11	H, glpf, panc, pta
B.c_group A4g5	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P

11 isolate(s) sharing MLST alleles in supercluster 125

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus FSLK6-0073	Dairy products, Laboratory Heat Treated Raw Milk (2012)	USA, New York	26/26	TH, H, K, CS, P
B.cereus B4084	Food (2013)	Netherlands	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4BU1		Spain	23/26	P, adk, ccpa, clpc, dinb, ftsa, gyrb, mdh, muts, panc, purf, pyca1, pyre, recf, rpob, succ, yhfl
B.cereus Lr4/2			21/26	TH, P, clpc, ftsa, gdpd, gyrb, mdh, muts, purf, pyca1, rpob, succ
B.cereus ATCC10876	Other, contaminated flask (1945) [well-studied strain used in many structural studies of the spore and exospore; two complete genomes sequenced for this strain with identical MLST sequences]		19/26	P, ccpa, clpc, ftsa, gdpd, glpt, mdh, muts, panc, pyca1, rpob, succ, yhfl
B.cereus AFS041711	Plant, core (2014)	USA, North Carolina	19/26	K, adk, ccpa, dinb, ftsa, gdpd, glpt, gmk, panc, pta, purh, pyre, tpi, yhfl
B.c_group AR7-3#1	Soil (2012) [sequences conflicting with isolate AR7-3#2]	Argentina	7/7	P
B.cereus B06_011	Human	France	7/7	TH
B.cereus BGSC6A3#1	[Wild type isolate; host for transducing phages CP51 and CP54; sequences conflicting with isolate BGSC6A3#2]		7/7	P
B.weihenstephanensis BGSC6A24			7/7	P
B.cereus R70	Other, mutant of strain NCTC 7464 for production of constitutive penicillinase		7/7	P

5 isolate(s) sharing MLST alleles in supercluster 126

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.toyonensis AFS073128	Plant, Corn grainbin dust (2013)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS025179	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.toyonensis AFS086130	Plant, Corn grainbin dust (2013)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS085003	Plant, Corn grainbin dust (2013)	USA, Iowa	26/26	TH, H, K, CS, P
B.toyonensis AFS034699	Plant, Corn root (2014)	USA, Iowa	22/26	K, CS, adk, ccpa, ftsa, gmk, ilvd, pta, purh, pyre, recf, tpi

2 isolate(s) sharing MLST alleles in supercluster 127

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group 172	Soil (2000)	Poland	7/7	P
B.c_group 207	Soil (2000)	Poland	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 128

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.wiedmannii AFS098222	Plant, Soybean leaf (2014)	USA, Minnesota	19/26	CS, adk, ccpa, ftsa, gmk, gyrb, ilvd, mbl, mdh, muts, pta, purh, pyre, succ
B.cereus MHI226	Dairy products, milk and milk products	Germany	19/26	CS, adk, ccpa, ftsa, gmk, gyrb, ilvd, mbl, mdh, muts, pta, purh, pyre, succ

6 isolate(s) sharing MLST alleles in supercluster 129

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.wiedmannii AFS080060	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.wiedmannii AFS038775	Plant, Corn root (2014)	USA, Iowa	25/25	TH, H, K, P, clpc, dinb, purf, yhfl
B.wiedmannii AFS068272	Plant, Corn root (2014)	USA, Iowa	25/26	TH, H, K, P, dinb, gdpd, purf, yhfl
B.wiedmannii AFS069985	Soil (2014)	USA, New York	24/26	K, P, ccpa, clpc, dinb, ftsa, gdpd, glpt, panc, purf, pyre, recf, succ
B.wiedmannii AFS065610	Soil (2014)	USA, New York	22/26	CS, ftsa, glpf, glpt, gmk, gyrb, ilvd, mbl, mdh, muts, purh, pyca2, pyre, recf, rpob, succ, tpi
B.c_group BF10-6	Soil (2012)	Burkina Faso	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 130

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus MM3	Food (2003) [sequences conflicting with isolate BGSC6A71]	USA	15/22	K, adk, clpc, dinb, ftsa, panc, pta, pyca2, recf, succ
B.cereus B4077	Food, chilled dessert (2012)	Netherlands	15/26	K, adk, clpc, dinb, ftsa, panc, pta, pyca2, recf, succ

3 isolate(s) sharing MLST alleles in supercluster 131

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus SDAKA96	Dairy products, raw milk (1997)	Sweden	23/26	TH, H, P, clpc, dinb, gdpd, gyrb, mdh, muts, pyca1, rpob
B.cereus MOD1Bc80	Food, Whole Black Pepper (2015)	USA, Maryland	21/26	H, clpc, dinb, gdpd, glpf, gmk, gyrb, ilvd, mdh, muts, panc, purh, pyca1, pyca2, rpob
B.c_group BC00034	Dairy products, milk products (2017)	Italy, Apulia	7/7	P

6 isolate(s) sharing MLST alleles in supercluster 132

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.weihenstephanensis SDAGO95	(1997)	Sweden	22/26	K, P, adk, ccpa, clpc, ftsa, glpt, purf, pyre, recf, yhfl
B.c_group VD118	Soil	Guadeloupe	22/26	K, P, adk, ccpa, clpc, ftsa, glpt, purf, pyre, recf, yhfl
B.c_group T0-8.a.i	Soil (2006)	UK	7/7	P
B.c_group T0-3.b.i	Soil (2006)	UK	7/7	P
B.cereus 58R1	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. hereward grown in a plot in which the previous crop was wheat (Triticum aestivum) var. cadenza]	UK, England, Rothamsted	7/7	P
B.thuringiensis PLBPN42/2	Soil (2012)	Poland	7/7	P

24 isolate(s) sharing MLST alleles in supercluster 133

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.anthracis AFS015248	(2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus BcFL2013			26/26	TH, H, K, CS, P
B.cereus G9241#1	Human, sputum and blood (1994) [human pneumonia; carries pXO1 plasmid with anthrax virulence genes and produces a polysaccharide capsule; two complete genomes sequenced for this strain with identical MLST sequences]	USA, Louisiana	26/26	TH, H, K, CS, P
B.anthracis AFS020887	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.anthracis AFS032990	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.anthracis AFS092859	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.anthracis AFS085583	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus BC-AK	Animal, kangaroo (2016)	China, Guangxi	26/26	TH, H, K, CS, P
B.anthracis AFS001713	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.anthracis AFS072900	Plant, Weed core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.anthracis AFS048113	Plant, Weed core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.anthracis AFS037377	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus LA2007	Human, blood and BAL (2007)	USA, Louisiana, Galliano	26/26	TH, H, K, CS, P
B.cereus 03BB87	Human, blood (2003) [human fatal pneumonia; carries pXO1 plasmid with anthrax virulence genes and produces a polysaccharide capsule]	USA, Texas	26/26	TH, H, K, CS, P
B.anthracis AFS079591	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus FM1			25/26	K, CS, P, ccpa, ftsa, glpt, pyre, recf, succ
B.anthracis AFS017475	Plant, Corn core (2014)	USA, Illinois	25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.anthracis AFS016024	Soil (2014)	USA, North Carolina	25/26	TH, H, K, P, clpc, dinb, purf, yhfl
B.anthracis AFS093149	Plant, Weed core (2014)	USA, North Carolina	25/26	TH, K, CS, P, ftsa, pyre, succ
B.anthracis AFS060304	Plant, Wheat plant (2014)	USA, North Carolina	25/26	TH, H, CS, P, gyrb, mbl, mdh, muts, rpob
B.anthracis AFS058037	Plant, core (2014)	USA, North Carolina	24/26	H, K, clpc, dinb, gdpd, glpf, gmk, ilvd, panc, purf, purh, pyca2, tpi
B.anthracis AFS062118	Plant, Corn core (2014)	USA, North Carolina	24/26	TH, H, P, clpc, dinb, gyrb, mdh, muts, purf, pyca1, rpob, yhfl
B.cereus G9898	Human, sputum (1996) [human fatal pneumonia; produces a polysaccharide capsule]	USA, Louisiana	7/7	P
B.cereus BOB4/2	Dairy products, milk products (2014)	Poland	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 134

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis Bt185	Soil (2002)	China	26/26	TH, H, K, CS, P
B.thuringiensis 78-2	Soil (2003)	China, Hebei, Baoding	26/26	TH, H, K, CS, P
B.cereus BGSC6A25	[Wild type isolate]		7/7	P

10 isolate(s) sharing MLST alleles in supercluster 135

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group A4o5	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group B4o2	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group A4s6	Soil (2002)	UK, England, Berkshire	7/7	P
B.weihenstephanensis Bw205	Food (2005)	UK, Wales, Cardiff	7/7	P
B.c_group A4i2	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.weihenstephanensis Bw178	Food (2005)	UK, Wales, Cardiff	7/7	P
B.weihenstephanensis Bw176	Food (2005)	UK, Wales, Cardiff	7/7	P
B.weihenstephanensis Bw175	Food (2005)	UK, Wales, Cardiff	7/7	P
B.c_group A3s3	Soil (2002)	UK, England, Berkshire	7/7	P
B.c_group HuA2-4	Soil	Belgium	7/26	P

2 isolate(s) sharing MLST alleles in supercluster 136

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group B4o7	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group B4i1	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 137

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis T18002	(1980)	USA	7/7	P
B.thuringiensis HD867	Animal, Insect, litter of silkworm (Bombyx mori) [two complete genomes sequenced for this strain with identical MLST sequences]	Japan	7/26	P

2 isolate(s) sharing MLST alleles in supercluster 138

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus Bc248		Brazil	7/7	P
B.cereus LFB586	Human, Urinary infection (<2000)	Brazil	7/7	P

8 isolate(s) sharing MLST alleles in supercluster 139

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS022412	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS031232	(2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS095928	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS077312	Plant, core (2014)	USA, North Carolina	25/26	TH, H, K, P, clpc, gdpd, purf, yhfl
B.cereus AFS071554	(2014)	USA, North Carolina	24/26	TH, K, CS, ftsa, gmk, ilvd, recf, succ, tpi
B.cereus AFS039717	Plant, core (2014)	USA, North Carolina	24/26	K, CS, adk, ftsa, glpf, glpt, gmk, ilvd, pta, pyca2, pyre, recf, succ, tpi
B.cereus AFS042177	Plant, core (2014)	USA, North Carolina	20/26	K, adk, clpc, dinb, ftsa, gdpd, gmk, ilvd, panc, pta, purf, pyca2, pyre, recf, succ
B.cereus AFS074533	Plant, core (2014)	USA, North Carolina	20/26	TH, clpc, ftsa, gdpd, gmk, gyrb, mdh, purf, pyca1, recf, rpob, succ, tpi, yhfl

31 isolate(s) sharing MLST alleles in supercluster 140

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.pseudomycoides AFS054612	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS089336	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.pseudomycoides AFS000475	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.pseudomycoides AFS092470	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS053905	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.pseudomycoides AFS098141	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.pseudomycoides AFS076343	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS026857	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS009893	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS009709	Plant, Soybean root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS065710	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS056801	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS088632	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS024178	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS004741	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS022225	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS079122	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS088703	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS068816	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS095077	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS008320	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS074688	Plant, Soybean leaf (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS052781	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.pseudomycoides AFS012367	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS040503	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS065668	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS080276	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.pseudomycoides AFS001949	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS080374	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.pseudomycoides AFS056690	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS049531	Soil (2014)	USA, Iowa	25/26	TH, H, K, CS, gmk, ilvd, purh

3 isolate(s) sharing MLST alleles in supercluster 141

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS036086	Plant, Weed core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS040627	Soil (2013)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS013362	Plant, Corn (2014)	USA, Iowa	21/26	P, adk, dinb, ftsa, gdpd, glpt, gyrb, mdh, muts, panc, purf, pyca1, pyre, recf, succ

4 isolate(s) sharing MLST alleles in supercluster 142

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis IBL3727	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3723	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3721	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3722	Soil (2009)	USA, Maryland	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 143

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.mycoides 219298			26/26	TH, H, K, CS, P
B.cereus BcAlHakam	Other, suspected bioweapons facility	Iraq	26/26	TH, H, K, CS, P
B.c_group KW58	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 144

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus LFB513	Food, rice mousse (1987)	Brazil	7/7	P
B.cereus Bc234		Brazil	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 145

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.pseudomycoides AFS022493	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS047869	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.mycoides AFS043018	Soil (2014)	USA, North Carolina	19/26	K, adk, ccpa, dinb, ftsa, glpt, ilvd, panc, pta, purf, purh, recf, tpi, yhfl

6 isolate(s) sharing MLST alleles in supercluster 146

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group E2s2	Soil (2002)	UK, England, Berkshire	7/7	P
B.cereus 25R1	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. x:19 grown in a plot in which the previous crop was wheat (Triticum aestivum) var. cadenza]	UK, England, Rothamsted	7/7	P
B.cereus 8R1	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. hereward grown in a plot in which the previous crop was wheat (Triticum aestivum) var. cadenza]	UK, England, Rothamsted	7/7	P
B.cereus 8R5	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. hereward grown in a plot in which the previous crop was wheat (Triticum aestivum) var. cadenza]	UK, England, Rothamsted	7/7	P
B.cereus 25R2	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. x:19 grown in a plot in which the previous crop was wheat (Triticum aestivum) var. cadenza]	UK, England, Rothamsted	7/7	P
B.weihenstephanensis SDANFFE664	Dairy water hose (1997) [from the same dairy as isolates SDANFFE640 and SDANFFE647]	Norway (Southern)	7/26	P

4 isolate(s) sharing MLST alleles in supercluster 147

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group VD154	Soil	UAE, Abu Dhabi	26/26	TH, H, K, CS, P
B.thuringiensis Sbt003	Soil (2010)	China, Hubei Province	26/26	TH, H, K, CS, P
B.thuringiensis T13001	Animal, Insect, Lepidoptera (1976)	Pakistan	26/26	TH, H, K, CS, P
B.thuringiensis T13004	Animal, Insect, Lepidoptera (1980)	Pakistan	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 148

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis PLJAS83/3	Soil (2012) [MLST data different from isolate JAS83/3]	Poland	7/7	P
B.weihenstephanensis JAS83/3	Soil (2011) [MLST data different from isolate PL JAS83/3]	Poland	7/26	P

3 isolate(s) sharing MLST alleles in supercluster 149

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 164667.S	Human, wound infection (2004)	UK, Scotland	7/7	P
B.cereus 161716.Z	Human, wound infection (2004)	UK, Scotland	7/7	P
B.cereus 162046.W	Human, wound infection (2004)	UK, Scotland	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 150

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.pseudomycoides AFS074290	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.pseudomycoides AFS099912	Plant, Corn (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.pseudomycoides AFS035137	Plant, Corn root (2014)	USA, Iowa	25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob

6 isolate(s) sharing MLST alleles in supercluster 151

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS081482	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS067617	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS007793	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS030046	Plant, Soybean root (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.cereus AFS033440	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS030475	(2014)	USA, Iowa	26/26	TH, H, K, CS, P

2 isolate(s) sharing MLST alleles in supercluster 152

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus IMSNU13043			6/6	K
B.cereus IMSNU11014	Soil	Korea	6/6	K

2 isolate(s) sharing MLST alleles in supercluster 153

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus NM12BC68	Soil (2012)	China, Inner Mongolia	7/7	P
B.cereus NM12BC54	Soil (2012)	China, Inner Mongolia	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 154

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis AFS058004	Plant, Corn grainbin dust (2013)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus NJ-W	Soil (2014)	China, Zhongshan mountain, Nanjing	26/26	TH, H, K, CS, P

8 isolate(s) sharing MLST alleles in supercluster 155

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS029792	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.c_group BAG2O-1	Soil	USA, Massachusetts, Boston	26/26	TH, H, K, CS, P
B.cereus AFS057725	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.c_group BAG1X1-1	Soil	USA, Massachusetts, Boston	26/26	TH, H, K, CS, P
B.c_group BAG1X2-3	Soil	USA, Massachusetts, Boston	26/26	TH, H, K, CS, P
B.c_group BAG1X2-1	Soil	USA, Massachusetts, Boston	26/26	TH, H, K, CS, P
B.c_group BAG1X2-2	Soil	USA, Massachusetts, Boston	26/26	TH, H, K, CS, P
B.c_group MCCC1A05691	Other, sediments (2008)	South China Sea	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 156

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group T0-19.b.i	Soil (2006)	UK	7/7	P
B.c_group T0-15.b.i	Soil (2006)	UK	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 157

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis BGSC4BX1	Soil, sandy soil	China	14/26	H, P
B.c_group KW34	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.thuringiensis CEB02/074	[Pasteur Institute]	France, Paris	7/7	H

2 isolate(s) sharing MLST alleles in supercluster 158

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 153804.Y	Human, wound infection (2004)	UK, Scotland	7/7	P
B.cereus BGSC6A87	Human, wound infection (2004) [sequences conflicting with isolate 141774.P]	UK, Scotland	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 159

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus F	Soil, ancient permafrost aged nearly 3 million years	Russia, Yakutia	26/26	TH, H, K, CS, P
B.cereus MOD1Bc135	Food, Dietary Supplements (2015)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus G2054	Food (1988) [diarrheal food poisoning; from the same incident as isolate G2055]	USA, Pennsylvania	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 160

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis B3001	Soil		7/7	P
B.thuringiensis B3044	Soil		7/7	P

10 isolate(s) sharing MLST alleles in supercluster 161

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS072097	Plant, Tomato plant (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS002368	Plant, Tomato plant (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus S6593	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6578	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6622	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6582a	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6565	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6583	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6582	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6615	Soil (2007)	USA, Maryland, Rockville	7/7	P

5 isolate(s) sharing MLST alleles in supercluster 162

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis BGSC4BB1		Korea (South)	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4AL1	(1994)	Korea (South)	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4BC1	Soil	China	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4BG1	Plant, leaves of ivy	Denmark	26/26	TH, H, K, CS, P
B.c_group KW44	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 163

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus S612	Other, groundwater (2015)	USA	19/26	H, clpc, dinb, gdpd, glpf, gmk, gyrb, mdh, panc, pyca1, pyca2, rpob, tpi
B.wiedmannii AFS044295	Plant, Soybean root (2014)	USA, Iowa	19/26	H, clpc, dinb, gdpd, glpf, gmk, gyrb, mdh, panc, pyca1, pyca2, rpob, tpi

2 isolate(s) sharing MLST alleles in supercluster 164

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group SH8-8	Soil (2011)	Kenya	7/7	P
B.c_group AR4-1	Soil (2012)	Argentina	7/7	P

7 isolate(s) sharing MLST alleles in supercluster 165

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cytotoxicus CH25	Food, Mashed potatoes (2014)	Switzerland	25/25	TH, K, CS, P, ftsa, pyre, succ
B.cytotoxicus CH13	Food, Mashed potatoes (2015)	Switzerland	25/25	TH, K, CS, P, ftsa, pyre, succ
B.cytotoxicus CH23	Food, Mashed potatoes (2015)	Switzerland	25/25	TH, K, CS, P, ftsa, pyre, succ
B.cytotoxicus CH1	Food, Mashed potatoes (2015)	Switzerland	25/25	TH, K, CS, P, ftsa, pyre, succ
B.cytotoxicus CVUAS2833	Food, potato puree (2007) [related to food poisoning]	Germany	25/25	TH, K, CS, P, ftsa, pyre, succ
B.cytotoxicus NVH0391/98	Food, Vegetable puree (1998) [diarrheal food poisoning outbreak, fatal]	France, Essone	24/25	TH, K, CS, P, ftsa, pyre
B.cytotoxicus INRAAF2	Food, potato puree (2003) [connected to a food poisoning case]	France	7/7	TH

3 isolate(s) sharing MLST alleles in supercluster 166

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus S6628	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6629	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6631	Soil (2007)	USA, Maryland, Rockville	7/7	P

8 isolate(s) sharing MLST alleles in supercluster 167

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.anthracis AFS068624	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.anthracis AFS023305	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.anthracis AFS025007	Plant, Corn core (2014)	USA, North Carolina	25/26	TH, K, CS, P, ftsa, recf, succ
B.anthracis AFS029987	Plant, tree leaf (2014)	USA, North Carolina	25/26	H, K, P, clpc, dinb, gdpd, purf, yhfl
B.anthracis AFS022655	Plant, Corn core (2014)	USA, North Carolina	24/26	TH, K, CS, ftsa, gmk, purh, pyre, recf, tpi
B.cereus AFS012518	Plant, Weed core (2014)	USA, North Carolina	23/26	TH, K, clpc, dinb, ftsa, gdpd, gmk, purf, purh, pyre, recf, tpi
B.thuringiensis AFS065631	Plant, core (2014)	USA, North Carolina	20/26	H, dinb, gdpd, glpf, gmk, gyrb, ilvd, mdh, pta, purh, pyca1, pyca2, rpob, yhfl
B.cereus FSLM8-0117	Dairy products, Laboratory Heat Treated Raw Milk (2012)	USA, New York	16/26	TH, clpc, dinb, gdpd, gyrb, mbl, muts, purh, pyca1, rpob

12 isolate(s) sharing MLST alleles in supercluster 168

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis KBBD1	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBC3	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBC8	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBA2	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBA3	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBAF5	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBA5	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBC5	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBA8	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBA1	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBAF1	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBAF8	Soil, Forest soil (2000)	France, Versailles	6/6	CS

5 isolate(s) sharing MLST alleles in supercluster 169

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 44R2	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. hereward grown in a plot in which the previous crop was wheat (Triticum aestivum) var. hereward]	UK, England, Rothamsted	7/7	P
B.cereus 44R1	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. hereward grown in a plot in which the previous crop was wheat (Triticum aestivum) var. hereward]	UK, England, Rothamsted	7/7	P
B.cereus 35R1	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. x:19 grown in a plot in which the previous crop was wheat (Triticum aestivum) var. cadenza]	UK, England, Rothamsted	7/7	P
B.cereus 44R5	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. hereward grown in a plot in which the previous crop was wheat (Triticum aestivum) var. hereward]	UK, England, Rothamsted	7/7	P
B.c_group D28-15.A.i	Soil (2006)	UK	7/7	P

4 isolate(s) sharing MLST alleles in supercluster 170

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis IBL4	Soil (1986)	USA, Nevada	7/7	P
B.thuringiensis IBL1302	Soil (1986)	Turkey	7/7	P
B.thuringiensis IBL1306	Soil (1987)	USA, California	7/7	P
B.cereus 16-00193			7/26	P

4 isolate(s) sharing MLST alleles in supercluster 171

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group KW41	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.cereus BGSC6A36	Soil, heather soil (1994) [sequences conflicting with isolate AH647]	Norway, Steigen	7/7	P
B.mycoides BGSC6A47	Dairy products, milk products (1999) [sequences conflicting with isolate WSBC10277]	Germany	7/7	P
B.c_group BGSC4AZ3			7/7	P

2 isolate(s) sharing MLST alleles in supercluster 172

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group KW51	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.thuringiensis BGSC4BD1		China	7/26	P

4 isolate(s) sharing MLST alleles in supercluster 173

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group AH1270	Human, cervix; Reykjavik University Hospital (2000) [from the same hospital as isolates AH1271, AH1272, and AH1273]	Iceland, Reykjavik	11/11	TH, H
B.cereus NVH0674/98	Food, Scrambled eggs or mashed swede (1998) [diarrheal food poisoning outbreak]	Norway	11/26	TH, H
B.cereus B06_021	Human, blood	France	7/7	TH
B.cereus B06_022	Human, blood	France	7/7	TH

3 isolate(s) sharing MLST alleles in supercluster 174

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group B4o8	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group PL29	Soil	Poland	7/7	P
B.c_group PL22	Soil		7/7	P

2 isolate(s) sharing MLST alleles in supercluster 175

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group AY2-1	Soil (2012)	Kazakhstan	7/7	P
B.thuringiensis T08009#2	[sequences conflicting with isolate T08009#1]		7/7	P

5 isolate(s) sharing MLST alleles in supercluster 176

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus BCT7	Other, dry towel (2005)	Japan	7/7	P
B.cereus BC3	Human (2005)	Japan	7/7	P
B.cereus BCT6	Other, steamed towel (2005)	Japan	7/7	P
B.c_group Bsp4	Human (2005)	Japan	7/7	P
B.cereus FSLW8-0932	Dairy products, Liquid skim milk CLT (2013)	USA, New York	7/26	P

2 isolate(s) sharing MLST alleles in supercluster 177

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group 36	Food (2014)	China, Tianjin	7/7	P
B.c_group 14	Food (2014)	China, Tangshan	7/7	P

6 isolate(s) sharing MLST alleles in supercluster 178

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.toyonensis AFS030602	Plant, Tomato plant (2014)	USA, North Carolina	24/26	TH, H, CS, P, mbl, muts, pyca1, rpob
B.thuringiensis MC28	Soil, virgin forest soil	China, Mu Chuan virgin forest, Sichuan Province	23/26	K, P, adk, clpc, dinb, ftsa, glpt, panc, pyre, recf, succ, yhfl
B.toyonensis AFS067491	Soil (2014)	USA, North Carolina	23/26	TH, H, clpc, dinb, gdpd, gyrb, ilvd, mbl, muts, purf, purh, pyca1, rpob, tpi
B.thuringiensis BGSC4AQ1	Soil	Korea (South)	23/26	P, ccpa, clpc, dinb, ftsa, gdpd, glpt, gyrb, mdh, muts, purf, pyca1, pyre, recf, rpob, succ, yhfl
B.toyonensis AFS049861	Plant, Wheat plant (2014)	USA, North Carolina	19/26	H, clpc, glpf, gmk, gyrb, ilvd, muts, pta, purh, pyca1, pyca2, rpob, yhfl
B.cereus NC543	Food (1983)	Japan	7/7	P

6 isolate(s) sharing MLST alleles in supercluster 179

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis AFS098399	Plant, Soybean leaf (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS022504	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis AFS063736	Plant, Soybean root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS050081	Plant, Soybean root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS056009	(2014)	USA, Iowa	25/26	TH, H, K, CS, gmk, purh, tpi
B.thuringiensis YBT-1518	Soil [high toxicity to nematode]	China, Jianghan Plain, Hubei	24/26	K, CS, adk, ccpa, ftsa, glpf, gmk, ilvd, purh, pyca2, pyre, recf, succ, tpi

2 isolate(s) sharing MLST alleles in supercluster 180

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group 2A6	[Pasteur Institute]	France, Paris	7/7	P
B.c_group 2C1	Soil [non-pathogenic; Pasteur Institute]	France, Paris	7/7	P

15 isolate(s) sharing MLST alleles in supercluster 181

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS079395	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.c_group BAG1X1-3	Soil	USA, Massachusetts, Boston	26/26	TH, H, K, CS, P
B.cereus AFS071894	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS098983	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS059087	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS031287	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS007907	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS033388	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS052321	Soil (2014)	USA, New York	25/26	TH, H, K, CS, ilvd, purh, tpi
B.c_group BAG1O-1	Soil	USA, Massachusetts, Boston	25/26	TH, H, CS, P, gyrb, mbl, mdh, muts, pyca1
B.cereus AFS085075	Soil (2014)	USA, New York	25/26	TH, H, K, CS, gmk, ilvd, purh
B.cereus AFS034785	Plant, core (2014)	USA, North Carolina	25/26	TH, H, K, P, clpc, dinb, gdpd, yhfl
B.mycoides SB13	Soil (2016)	Netherlands	24/26	TH, H, K, clpc, dinb, gmk, ilvd, purf, purh, yhfl
B.cereus AFS084444	(2014)	USA, North Carolina	20/26	H, clpc, glpf, gmk, gyrb, ilvd, mbl, muts, panc, purf, purh, pyca2, tpi, yhfl
B.cereus AFS002757	Soil (2014)	USA, New York	17/26	H, clpc, gmk, gyrb, mdh, muts, purf, purh, pyca1, pyca2, tpi

3 isolate(s) sharing MLST alleles in supercluster 182

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus MOD1Bc207	Other, Baby Wipes (2016)	USA, Maryland	23/26	TH, H, CS, P, gyrb, muts, rpob
B.cereus MOD1Bc93	Food, Ground Black Pepper (2015)	USA, Maryland	21/26	H, CS, gmk, gyrb, muts, pta, purh, pyca2, rpob, tpi
B.c_group 20164	Food (2013)	China	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 183

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 1952	Human, blood (1955) [human fatal septicemia]	USA, Georgia	7/7	P
B.cereus 2002734360	Human, blood (1954) [human septicaemia, fatal]	USA, Georgia	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 184

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS031451	Plant, core (2014)	USA, North Carolina	25/26	TH, H, K, P, clpc, dinb, gdpd, purf
B.c_group BAG5X1-1	Soil	USA, Massachusetts, Boston	25/26	TH, H, K, P, clpc, dinb, gdpd, purf

2 isolate(s) sharing MLST alleles in supercluster 185

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS096268	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS065853	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P

2 isolate(s) sharing MLST alleles in supercluster 186

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 03BR1283	Human (2003) [Isolated from the same Texas patient as isolate 03BB102; human pneumonia, fatal]	USA, Texas	7/7	P
B.cereus 03BB102	Human, blood (2003) [human fatal pneumonia; carries pXO1 plasmid with anthrax virulence genes]	USA, Texas	7/26	P

3 isolate(s) sharing MLST alleles in supercluster 187

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus CI	Animal, great apes (chimpanzees) (2001,2002) [previously named atypical B.anthracis because it carries pXO1 and pXO2 plasmids with anthrax virulence and polyglutamate capsule genes; produces a capsule]	Ivory Coast, Tai National Park	23/26	K, P, adk, ccpa, clpc, dinb, ftsa, panc, purf, recf, succ, yhfl
B.c_group ISP3191	Food		18/26	K, adk, clpc, dinb, ftsa, gmk, panc, purf, purh, pyca2, recf, succ, yhfl
B.cereus CA	Animal, great apes (chimpanzee and gorilla) (2004,2005) [previously named atypical B.anthracis because it carries pXO1 and pXO2 plasmids with anthrax virulence and polyglutamate capsule genes; produces a capsule]	Cameroon, Dja Reserve	11/11	P, adk, ccpa, ftsa, recf

3 isolate(s) sharing MLST alleles in supercluster 188

Strain	Source	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus BGSC6E2		7/7	P
B.cereus BGSC6A3#2	[Wild type isolate; host for transducing phages CP51 and CP54; sequences conflicting with isolate BGSC6A3#1]	7/7	P
B.cereus BGSC6E1	[produces chitinase]	7/26	P

2 isolate(s) sharing MLST alleles in supercluster 189

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group KW6	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.thuringiensis BGSC4AF1	Soil	Cameroon	7/26	P

4 isolate(s) sharing MLST alleles in supercluster 190

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.weihenstephanensis GOE9	Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)	Germany, Goettingen	26/26	TH, H, K, CS, P
B.weihenstephanensis GOE10	Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)	Germany, Goettingen	26/26	TH, H, K, CS, P
B.weihenstephanensis GOE8	Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)	Germany, Goettingen	26/26	TH, H, K, CS, P
B.cereus AFS041432	Plant, Weed leaf (2014)	USA, Ohio	26/26	TH, H, K, CS, P

3 isolate(s) sharing MLST alleles in supercluster 191

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus BGSC6A98	Human, wound infection (2004) [sequences conflicting with isolate 154145.Q]	UK, Scotland	7/7	P
B.cereus BGSC6A28	Food, indonesian rice dish (1973) [food connected to illness, emetic food poisoning, emetic toxin/cereulide producer; sequences conflicting with isolate F4431/73]	Indonesia	7/7	P
B.cereus BGSC6A30	[sequences conflicting with isolate S78]		7/7	P

9 isolate(s) sharing MLST alleles in supercluster 192

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS089785	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.cereus AFS079281	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.cereus AFS086947	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.cereus AFS042632	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.cereus AFS002548	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS088199	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.cereus AFS002224	Soil (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS066968	Plant, Soybean root (2014)	USA, Missouri	25/26	TH, H, CS, P, mbl, mdh, muts, pyca1, rpob
B.cereus AFS020540	Plant, Corn core (2014)	USA, Illinois	25/26	TH, H, K, P, clpc, dinb, gdpd, purf

3 isolate(s) sharing MLST alleles in supercluster 193

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus S6642	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6627	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.thuringiensis AFS064137	Soil (2014)	USA, North Carolina	7/26	P

5 isolate(s) sharing MLST alleles in supercluster 194

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis BGSC4BY1	Plant, Scotch pine [sequences conflicting with isolate T61001]	Denmark	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4BJ1	Soil	Poland	26/26	TH, H, K, CS, P
B.thuringiensis T61001	[sequences conflicting with isolate BGSC4BY1]		26/26	TH, H, K, CS, P
B.wiedmannii AFS002371	Plant, Weed leaf (2014)	USA, Indiana	20/26	TH, H, clpc, gdpd, mbl, muts, purh, pyca1, rpob, tpi, yhfl
B.c_group KW13	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 195

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus BC_42	Dairy products, farm dairy products (2006)	Italy	7/7	P
B.cereus BC_43	Dairy products, farm dairy products (2006)	Italy	7/7	P
B.cereus BC_44	Dairy products, farm dairy products (2006)	Italy	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 196

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus NM12BC62	Soil (2012)	China, Inner Mongolia	7/7	P
B.cereus NM12BC65	Soil (2012)	China, Inner Mongolia	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 197

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 9506		UK	7/7	P
B.cereus 2002734484	Other, environmental	USA	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 198

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.wiedmannii AFS011906	Plant, core (2014)	USA, North Carolina	21/26	CS, adk, ccpa, ftsa, glpf, gmk, ilvd, mbl, mdh, muts, pyca1, pyca2, pyre, rpob, succ, tpi
B.wiedmannii AFS045893	Soil (2014)	USA, North Carolina	21/26	CS, adk, ccpa, ftsa, glpf, gmk, ilvd, mbl, mdh, muts, pyca1, pyca2, pyre, rpob, succ, tpi

4 isolate(s) sharing MLST alleles in supercluster 199

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.mycoides BGSC6A12	[non-rhizoidal colony morphology]		7/7	P
B.mycoides BGSC6A11			7/7	P
B.mycoides BGSC6A13	[sequences conflicting with isolate ATCC6463]		7/7	P
B.cereus F77/2809a	Human (1977) [infant born very edematous]	UK	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 200

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group DM55	Other, sea water, polluted marine environment (putatively identified as B.thuringiensis)		7/7	P
B.thuringiensis BGSC4B3			7/7	P
B.cereus R_3039/03	Human, blood (2003) [human septicaemia]	UK, England	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 201

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 03BB108	Other, dust in workspace associated with clinical case (isolate 03BR1283) (2003) [two complete genomes sequenced for this strain with identical MLST sequences]	USA, Texas	23/26	CS, P, adk, ftsa, glpt, gyrb, mdh, muts, pyca1, pyre, rpob, succ
B.cereus MOD1Bc90	Food, Whole Black Pepper (2015)	USA, Maryland	20/26	CS, adk, ftsa, glpt, gmk, gyrb, mdh, muts, purh, pyca1, pyca2, pyre, rpob, succ, tpi
B.cereus D4214	Human, blood (1975)	USA, Texas	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 202

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS058404	Plant, Weed plant (2014)	USA, North Carolina	23/26	TH, H, P, clpc, dinb, gyrb, mbl, mdh, muts, purf, rpob
B.cereus R_3098/03	Human, blood (2003) [human septicaemia]	UK, England	22/26	TH, P, clpc, dinb, ftsa, gyrb, mdh, muts, purf, pyca1, pyre, rpob, succ
B.cereus AFS029677	Soil (2014)	USA, North Carolina	21/26	TH, H, clpc, dinb, gmk, gyrb, mbl, mdh, purf, pyca1, rpob, tpi

4 isolate(s) sharing MLST alleles in supercluster 203

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis GOE2#1	Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)	Germany, Goettingen	26/26	TH, H, K, CS, P
B.thuringiensis GOE1#1	Soil or plant, tomato (Solanum lycopersicum) rhizosphere (2014)	Germany, Goettingen	26/26	TH, H, K, CS, P
B.cereus MROC2	Animal, Chicken/Red junglefowl (Gallus gallus) faeces/stools (2010)	USA, California, Fresno County	20/26	CS, adk, ftsa, glpf, gmk, gyrb, mdh, muts, pta, pyca1, pyca2, pyre, recf, rpob, succ
B.cereus MOD1Bc73	Food, Paprika (2015)	USA, Maryland	19/26	K, clpc, ftsa, glpf, glpt, gmk, panc, pta, pyca2, pyre, recf, succ, tpi, yhfl

2 isolate(s) sharing MLST alleles in supercluster 204

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group A3m5	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group A3o2	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 205

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group AH407	Dairy	Finland, Valio	11/11	TH, H
B.c_group AH621	Soil, heather soil (1994)	Norway, Singsaas/Saetereng	11/26	TH, H

4 isolate(s) sharing MLST alleles in supercluster 206

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS009162	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS097384	Soil (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS076352	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.cereus AFS088431	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P

4 isolate(s) sharing MLST alleles in supercluster 207

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.weihenstephanensis WSBC10202	Dairy products, pasteurized milk (1999)	Germany	7/7	P
B.weihenstephanensis BGSC6A46			7/7	P
B.weihenstephanensis Bw180	Food (2005)	UK, Wales, Cardiff	7/7	P
B.weihenstephanensis Bw210	Food (2005)	UK, Wales, Cardiff	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 208

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus S6617	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus Rock3-42	Soil	USA, Maryland, Rockville	7/26	P

4 isolate(s) sharing MLST alleles in supercluster 209

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS079629	(2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS028664	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.c_group BAG3O-1	Soil	USA, Massachusetts, Boston	26/26	TH, H, K, CS, P
B.cereus AFS042904	Plant, Wheat plant (2014)	USA, North Carolina	26/26	TH, H, K, CS, P

2 isolate(s) sharing MLST alleles in supercluster 210

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group AY4-1	Soil (2012)	Kazakhstan	7/7	P
B.c_group AY8-1	Soil (2012)	Kazakhstan	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 211

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus RIVMBC485	(2001)		17/26	P, adk, ccpa, clpc, ftsa, muts, pyca1, pyre, rpob, succ, yhfl
B.cereus AFS035470	Soil (2014)	USA, New York	17/26	P, adk, ccpa, clpc, ftsa, muts, pyca1, pyre, rpob, succ, yhfl
B.thuringiensis PLJAS92/2	Soil (2012)	Poland	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 212

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 46R1-A	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. hereward grown in a plot in which the previous crop was wheat (Triticum aestivum) var. cadenza]	UK, England, Rothamsted	7/7	P
B.cereus 46R1	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. hereward grown in a plot in which the previous crop was wheat (Triticum aestivum) var. cadenza]	UK, England, Rothamsted	7/7	P

4 isolate(s) sharing MLST alleles in supercluster 213

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus S6612	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6557	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6594	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6611	Soil (2007)	USA, Maryland, Rockville	7/7	P

6 isolate(s) sharing MLST alleles in supercluster 214

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus FSLW8-0520	Other, RO - Liquid (WIP) (2012)	USA, New York	26/26	TH, H, K, CS, P
B.cereus FSLW8-0523	Other, Blended liquid whey silo (2012)	USA, New York	26/26	TH, H, K, CS, P
B.cereus 910BCER	Human	USA, Washington	26/26	TH, H, K, CS, P
B.cereus 896BCER	Human	USA, Washington	26/26	TH, H, K, CS, P
B.cereus 2012-6	Dairy products, milk products	China	7/7	P
B.c_group AH891	Human, blood	Norway, Oslo	7/7	TH

2 isolate(s) sharing MLST alleles in supercluster 215

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group KW32	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.thuringiensis BGSC4BM1	Soil	Spain	7/26	P

2 isolate(s) sharing MLST alleles in supercluster 216

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus MOD1Bc217	Other, Baby Wipes (2016)	USA, Maryland	17/26	K, clpc, ftsa, gdpd, glpf, gmk, panc, pta, purf, purh, tpi, yhfl
B.cereus MOD1Bc72	Food, Paprika (2015)	USA, Maryland	17/26	K, clpc, ftsa, gdpd, glpf, gmk, panc, pta, purf, purh, tpi, yhfl

2 isolate(s) sharing MLST alleles in supercluster 217

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis BGSC4P1	Animal, Insect, Codling moth (Cydia pomonella) [sequences conflicting with isolate HD395]	Pakistan	7/7	P
B.thuringiensis IBL55	Soil (1987)	USA, Wyoming	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 218

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis BGSC4AN1	Soil (1986)	China	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4AV1		Malaysia	26/26	TH, H, K, CS, P
B.c_group KW30	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 219

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 35R6	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. x:19 grown in a plot in which the previous crop was wheat (Triticum aestivum) var. cadenza]	UK, England, Rothamsted	7/7	P
B.cereus 35R4	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. x:19 grown in a plot in which the previous crop was wheat (Triticum aestivum) var. cadenza]	UK, England, Rothamsted	7/7	P
B.cereus 35R3	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. x:19 grown in a plot in which the previous crop was wheat (Triticum aestivum) var. cadenza]	UK, England, Rothamsted	7/7	P

7 isolate(s) sharing MLST alleles in supercluster 220

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus NZAS02	Food, pasteurized egg white (2015)	New Zealand, Dunedin	26/26	TH, H, K, CS, P
B.cereus NZAS03	Food, unpasteurized egg white (2015)	New Zealand, Dunedin	26/26	TH, H, K, CS, P
B.cereus NVH0861/00	(2000) [diarrheal food poisoning outbreak]	Norway	26/26	TH, H, K, CS, P
B.cereus 16-00177			24/26	TH, H, P, dinb, gdpd, gyrb, mdh, muts, purf, pyca1, rpob, yhfl
B.cereus BC_34	Dairy products, industrial dairy products (2006)	Italy (Northeastern)	7/7	P
B.cereus BC_35	Dairy products, industrial dairy products (2006)	Italy (Northeastern)	7/7	P
B.c_group FSLH7-0344	Dairy products, milk products (2005)	USA	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 221

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis KBBE1	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBD8	Soil, Forest soil (2000)	France, Versailles	6/6	CS

2 isolate(s) sharing MLST alleles in supercluster 222

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus Bc218		Brazil	7/7	P
B.cereus LFB1130	Animal, Insect	Egypt	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 223

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group KW11	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.thuringiensis BGSC4AS1	Food, black pepper powder	Brazil	7/26	P

2 isolate(s) sharing MLST alleles in supercluster 224

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis T09016	Other, grain (1988) [sequences conflicting with isolate BGSC4L6]	Mexico	7/7	P
B.thuringiensis T09043	Food, rice (1994)	Thailand	7/7	P

5 isolate(s) sharing MLST alleles in supercluster 225

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis IBL3796	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3797	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3800	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3798	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3799	Soil (2009)	USA, Maryland	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 226

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus LFB585	Human, Urinary infection (<2001)	Brazil	7/7	P
B.cereus Bc247		Brazil	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 227

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 2013-5	Dairy products, milk products	China	7/7	P
B.c_group VD140	Soil	UK, Scotland	7/26	P

3 isolate(s) sharing MLST alleles in supercluster 228

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group E2i8	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group E2s7	Soil (2002)	UK, England, Berkshire	7/7	P
B.c_group A4g7	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P

7 isolate(s) sharing MLST alleles in supercluster 229

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus RIVMBC120	[diarrheal food poisoning]		21/26	TH, P, dinb, ftsa, gdpd, gyrb, mdh, purf, pyca1, pyre, recf, rpob
B.wiedmannii AFS013084	Soil (2014)	USA, New York	19/26	TH, dinb, ftsa, gdpd, gyrb, ilvd, mdh, purf, pyca1, pyre, recf, rpob, tpi
B.c_group PL42	Soil	Poland	7/7	P
B.c_group C3i10	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group A4o4	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group PL20	Soil		7/7	P
B.c_group PL21	Soil		7/7	P

2 isolate(s) sharing MLST alleles in supercluster 230

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis LFB861	Food, black pepper (1994)	Brazil	7/7	P
B.thuringiensis Bt195		Brazil	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 231

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus S6643	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6644	Soil (2007)	USA, Maryland, Rockville	7/7	P

4 isolate(s) sharing MLST alleles in supercluster 232

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus WH2015	Food, turbot (2015)	China, Wuhan	26/26	TH, H, K, CS, P
B.cereus D17	[Food Research Institute, University of Wisconsin-Madison]	USA, Wisconsin, Madison	26/26	TH, H, K, CS, P
B.cereus 16-00175			26/26	TH, H, K, CS, P
B.cereus F4370/75#1	Food, barbecued chicken (1975) [diarrheal food poisoning outbreak; sequences conflicting with isolate BGSC6A27]	Canada or UK	12/14	H, glpf, gmk, pta, purh, pyca2

2 isolate(s) sharing MLST alleles in supercluster 233

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus F439	Human, faeces/stools (1981) [diarrheal food poisoning; case linked to that of isolate F438]	USA, Michigan	7/7	P
B.cereus F438	Human, faeces/stools (1981) [diarrheal food poisoning; case linked to that of isolate F439]	USA, Michigan	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 234

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus Bc245		Brazil	7/7	P
B.cereus LFB704	Food, soup (1987)	Brazil	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 235

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.wiedmannii AFS073563	Plant, Corn grainbin dust (2013)	USA, Iowa	26/26	TH, H, K, CS, P
B.wiedmannii AFS010764	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P

3 isolate(s) sharing MLST alleles in supercluster 236

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 25R6	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. x:19 grown in a plot in which the previous crop was wheat (Triticum aestivum) var. cadenza]	UK, England, Rothamsted	7/7	P
B.c_group T0-17.b.i	Soil (2006)	UK	7/7	P
B.c_group T0-24.b.i	Soil (2006)	UK	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 237

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group D10-15.B.i2	Soil (2006)	UK	7/7	P
B.weihenstephanensis Bw174	Food (2005)	UK, Wales, Cardiff	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 238

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus Bc221		Brazil	7/7	P
B.cereus LFB1133	Animal, Insect	USA	7/7	P

4 isolate(s) sharing MLST alleles in supercluster 239

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 22R4	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. x:19 grown in a plot in which the previous crop was wheat (Triticum aestivum) var. hereward]	UK, England, Rothamsted	7/7	P
B.cereus 22R2	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. x:19 grown in a plot in which the previous crop was wheat (Triticum aestivum) var. hereward]	UK, England, Rothamsted	7/7	P
B.weihenstephanensis Bw207	Food (2005)	UK, Wales, Cardiff	7/7	P
B.c_group D10-16.A.i	Soil (2006)	UK	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 240

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis PLBPN51/1	Soil (2012)	Poland	7/7	P
B.cereus FSLH7-0926	Dairy products, Pasteurized 2% milk (2005)	USA, New York	7/26	P

2 isolate(s) sharing MLST alleles in supercluster 241

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group D10-10.b.i	Soil (2006)	UK	7/7	P
B.c_group D10-8.b.i	Soil (2006)	UK	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 242

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis PLJAS67/5	Soil (2012)	Poland	7/7	P
B.wiedmannii AFS069629	Plant, Soybean core (2014)	USA, Iowa	7/26	P

2 isolate(s) sharing MLST alleles in supercluster 243

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis jopa	Soil (2003)	UK, Scotland	7/7	P
B.thuringiensis T08003	(1964)	Canada	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 244

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus S6610	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6600	Soil (2007)	USA, Maryland, Rockville	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 245

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.mycoides BGSC6A19	Soil	Japan, Chiba	7/7	P
B.c_group KW21	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 246

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group KW43	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.cereus XY12-121	Dairy products, milk products (2012)	China	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 247

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus NC1263	Food, rice (1989) [human diarrhea]	India	7/7	P
B.cereus PC-1	Plant, leaves (2016)	China, Shaanxi Province	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 248

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus ATCC10987#2	Dairy products, Cheese (1930) [strain named ATCC10987 but sequences conflicting with isolate ATCC10987#1 and different origin]	Pakistan, Ravi River	26/26	TH, H, K, CS, P
B.cereus G9241#2	Animal, fish from river (2013) [carries pXO1 plasmid with anthrax virulence genes and produces a polysaccharide capsule; two complete genomes sequenced for this strain with identical MLST sequences; strain named G9241 but sequences conflicting with isolate G9241#1 and different origin]	Pakistan, Ravi River	26/26	TH, H, K, CS, P

2 isolate(s) sharing MLST alleles in supercluster 249

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group C3o31	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group B4o9	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 250

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus BCT3		Japan	7/7	P
B.cereus BCT4		Japan	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 251

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group C3o39	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.thuringiensis 67-S-1	Plant, leaves of clover (Trifolium hybridum) (2004)	UK	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 252

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.anthracis B06_039	Soil [from a site where a dead animal was buried 2 years before]	Italy	7/7	TH
B.anthracis B04_002	Animal, dead sheep	Spain	7/7	TH
B.anthracis B04_022	Human (1996) [anthrax]	France, Poitiers	7/7	TH

2 isolate(s) sharing MLST alleles in supercluster 253

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis Bt198		Brazil	7/7	P
B.thuringiensis LFB914	Soil (1992)	Brazil	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 254

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.toyonensis AFS073955	Soil (2013)	USA, North Carolina	26/26	TH, H, K, CS, P
B.toyonensis AFS044250	Soil (2013)	USA, North Carolina	26/26	TH, H, K, CS, P

3 isolate(s) sharing MLST alleles in supercluster 255

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.gaemokensis KCTC13318	[Yellow Sea tidal flat sediment (2011) [two complete genomes sequenced for this strain with different MLST sequences and origins; strain sequenced by Super-Bacteria Research Center, KRIBB, Daejeon, South Korea; sequences conflicting with isolate JCM15801]]	Korea (South), Yellow Sea	25/25	TH, H, K, P, clpc, dinb, gdpd, yhfl
B.gaemokensis JCM15801	[Yellow Sea tidal flat sediment (2011) [two complete genomes sequenced for this strain with different MLST sequences and origins; strain sequenced by The Third Institute of Oceanography, State of Oceanic Administration (SOA), Xiamen, Fujian, China; sequences conflicting with isolate KCTC 13318]]		25/26	TH, H, K, P, clpc, dinb, gdpd, yhfl
B.c_group MCCC1A00707	Other, sediments (2008)	Yellow Sea	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 256

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group PL11	Soil		7/7	P
B.c_group PL12	Soil		7/7	P

2 isolate(s) sharing MLST alleles in supercluster 257

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 16-00221			25/26	TH, H, K, CS, gmk, ilvd, purh
B.cereus MOD1Bc106	Other, Oxytetracycline Medicated Fish Feed (2006)	USA, Maryland	25/26	TH, H, K, CS, gmk, ilvd, purh

3 isolate(s) sharing MLST alleles in supercluster 258

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS052525	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS050720	Plant, Soybean plant (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus AFS020704	Plant, Corn core (2014)	USA, North Carolina	25/26	TH, K, CS, P, ftsa, pyre, recf

3 isolate(s) sharing MLST alleles in supercluster 259

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS092566	Soil (2014)	USA, New York	26/26	TH, H, K, CS, P
B.c_group BAG2X1-1	Soil	USA, Massachusetts, Boston	26/26	TH, H, K, CS, P
B.thuringiensis PLBB16/2	Soil (2012)	Poland	7/7	P

4 isolate(s) sharing MLST alleles in supercluster 260

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis IBL3763	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3778	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3803	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3747	Soil (2009)	USA, Maryland	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 261

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus BGSC6A10	[Wild type isolate; Host for phages Bastille and TP21]		7/7	P
B.c_group KW53	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 262

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus BC_30	Food, ready-to-eat product (2006)	Italy (Northwestern)	7/7	P
B.cereus NC466	Dairy products, milk products (1982)	Japan	7/7	P
B.cereus 4105	Food (2005)	UK, England, Chelmsford	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 263

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.wiedmannii AFS023732	Soil (2014)	USA, Iowa	23/26	H, clpc, dinb, gmk, gyrb, ilvd, mbl, muts, panc, pta, purf, purh, pyca1, pyca2, rpob, tpi, yhfl
B.wiedmannii AFS054589	Plant, Soybean core (2014)	USA, Iowa	23/26	H, clpc, dinb, gmk, gyrb, ilvd, mbl, muts, panc, pta, purf, purh, pyca1, pyca2, rpob, tpi, yhfl

2 isolate(s) sharing MLST alleles in supercluster 264

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus FT9	Other, hot springs	Brazil, Goias, Caldas Novas	18/25	K, adk, ccpa, dinb, ftsa, glpf, gmk, ilvd, pta, purf, purh, recf, tpi
B.cereus ATCC4342	Dairy products, milk (1900) [sensitive to gamma phage infecting B.anthracis; three complete genomes sequenced for this strain with identical MLST sequences]	USA	18/26	K, adk, ccpa, dinb, ftsa, glpf, gmk, ilvd, pta, purf, purh, recf, tpi

2 isolate(s) sharing MLST alleles in supercluster 265

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group T0-23.b.i	Soil (2006)	UK	7/7	P
B.c_group T0-7.a.i	Soil (2006)	UK	7/7	P

4 isolate(s) sharing MLST alleles in supercluster 266

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus BC_25	Food, egg product (2006)	Italy (Southern)	7/7	P
B.cereus BC_21	Food, egg product (2006)	Italy (Southern)	7/7	P
B.cereus BC_11	Food, egg product (2006)	Italy (Southern)	7/7	P
B.cereus BC_3	Food, egg product (2006)	Italy (Southern)	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 267

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis IBL66	Soil (1987)	USA, Illinois	7/7	P
B.thuringiensis BGSC4K9			7/7	P

2 isolate(s) sharing MLST alleles in supercluster 268

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus Bc211		Brazil	7/7	P
B.cereus LFB1123	Animal, Insect	Madagascar	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 269

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis KBBE6	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBE8	Soil, Forest soil (2000)	France, Versailles	6/6	CS

2 isolate(s) sharing MLST alleles in supercluster 270

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis LFB476	Soil (1998)	Brazil	7/7	P
B.thuringiensis Bt206		Brazil	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 271

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group K14_789	(2014)	Korea (South)	7/7	P
B.cereus B4088	Food (2013)	Netherlands	7/26	P

2 isolate(s) sharing MLST alleles in supercluster 272

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis PLmBB34	Soil (2012)	Poland	7/7	P
B.weihenstephanensis FSLW7-1108	Dairy products, raw milk (2010)	USA	7/26	P

2 isolate(s) sharing MLST alleles in supercluster 273

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus KBCH4	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.cereus KBCC4	Soil, Forest soil (2000)	France, Versailles	6/6	CS

2 isolate(s) sharing MLST alleles in supercluster 274

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 1R5	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. hereward grown in a plot in which the previous crop was wheat (Triticum aestivum) var. hereward]	UK, England, Rothamsted	7/7	P
B.cereus 1R6	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. hereward grown in a plot in which the previous crop was wheat (Triticum aestivum) var. hereward]	UK, England, Rothamsted	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 275

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group BC00081	Dairy products, milk products (2017)	Italy, Apulia	7/7	P
B.cereus B4147	Food, cereals, cereal products, (fermented) breads, pasta and pastries (2012)	Netherlands	7/26	P

2 isolate(s) sharing MLST alleles in supercluster 276

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus HB12BC215	Food packaging (2012)	China, Hebei Province	7/7	P
B.cereus 16-00195			7/26	P

2 isolate(s) sharing MLST alleles in supercluster 277

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group KW9	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.thuringiensis HD977	Animal, Insect, Oriental Leafworm Moth/Cluster caterpillar/Cotton leafworm/Tobacco cutworm/Tobacco caterpillar/Tropical armyworm (Spodoptera litura/Prodenia litura)	China	7/26	P

3 isolate(s) sharing MLST alleles in supercluster 278

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis h16			26/26	TH, H, K, CS, P
B.thuringiensis BGSC4V1	Animal, Insect, silkworm (Bombyx mori) (1981)	Japan	26/26	TH, H, K, CS, P
B.c_group KW39	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 279

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 2002734433	Human, blood (2004)	USA, California	7/7	P
B.cereus 04S_00334	Human, blood (2004)	USA, California	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 280

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group 34	Food (2014)	China, Beijing	7/7	P
B.cereus 905	Soil or plant [wheat (Triticum) rhizosphere (1985)]	China, Beijing	7/26	P

2 isolate(s) sharing MLST alleles in supercluster 281

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 24R1	Soil or plant [Isolated from rhizosphere of wheat (Triticum aestivum) var. x:19 grown in a plot in which the previous crop was wheat (Triticum aestivum) var. cadenza]	UK, England, Rothamsted	7/7	P
B.c_group D10-16.B.i	Soil (2006)	UK	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 282

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.mycoides BGSC6A20			7/7	P
B.c_group KW45	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 283

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis IBL3676	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3678	Soil (2009)	USA, Maryland	7/7	P
B.thuringiensis IBL3677	Soil (2009)	USA, Maryland	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 284

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis PLJAS21/4	Soil (2012)	Poland	7/7	P
B.weihenstephanensis AFS084669	Soil (2014)	USA, New York	7/26	P

2 isolate(s) sharing MLST alleles in supercluster 285

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS053592	Plant, core (2014)	USA, North Carolina	22/26	K, P, adk, clpc, dinb, ftsa, gdpd, panc, purf, pyre, succ
B.cereus AFS024089	Plant, core (2014)	USA, North Carolina	22/26	K, P, adk, clpc, dinb, ftsa, gdpd, panc, purf, pyre, succ

2 isolate(s) sharing MLST alleles in supercluster 286

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis LFB860	Food, black pepper (1994)	Brazil	7/7	P
B.thuringiensis Bt193		Brazil	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 287

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus Bc235		Brazil	7/7	P
B.cereus LFB693	Food, ice cream (1987)	Brazil	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 288

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group B4s8	Soil (2002)	UK, England, Berkshire	7/7	P
B.c_group B4o12	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group B4o13	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P

4 isolate(s) sharing MLST alleles in supercluster 289

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.anthracis AFS044195	Plant, tree leaf (2013)	USA, North Carolina	26/26	TH, H, K, CS, P
B.anthracis AFS003761	Plant, Corn core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.anthracis AFS027725	Plant, core (2014)	USA, North Carolina	25/26	H, K, CS, gmk, ilvd, pta, purh, pyca2, tpi
B.anthracis AFS096050	Plant, Corn (2014)	USA, North Carolina	23/26	TH, H, K, dinb, gmk, purf, purh, tpi, yhfl

2 isolate(s) sharing MLST alleles in supercluster 290

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.mycoides ATCC23258	Soil (1949)		7/7	P
B.mycoides KCCM40260	Soil	New Guinea	7/12	P

2 isolate(s) sharing MLST alleles in supercluster 291

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis LFB472	Animal, Insect	Pakistan	7/7	P
B.thuringiensis Bt173		Brazil	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 292

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 163907.W	Human, wound infection (2004)	UK, Scotland	7/7	P
B.cereus 7/27/S	Human, faeces/stools [human diarrhea]		7/26	P

2 isolate(s) sharing MLST alleles in supercluster 293

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis BGSC4L6	Other, grain (1988) [sequences conflicting with isolate T09016]	Mexico	7/7	P
B.cereus m1576	Food, poultry (1987)	Brazil	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 294

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.mycoides LFB120			7/7	P
B.mycoides ATCC1177	[Foundation Oswaldo Cruz (FIOCRUZ), National Institute for Health Quality Control]	Brazil, Rio de Janeiro	7/7	P

4 isolate(s) sharing MLST alleles in supercluster 295

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus RIVMBC938	Food, lamb-s lettuce/Corn salad (2002)		23/26	K, P, adk, clpc, ftsa, gdpd, glpt, panc, purf, pyre, succ, yhfl
B.cereus INRAZB5-J			21/26	K, CS, adk, ftsa, glpf, glpt, purh, pyca2, pyre, succ, tpi
B.cereus ADDABC45	Dairy products, milk products (2017)	Austria	7/7	P
B.cereus F2038/78	Human, wound (1978) [non-toxic, non-infectious isolate from transplantation wound]	UK	6/6	CS

6 isolate(s) sharing MLST alleles in supercluster 296

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis BGSC4BT1#1	Soil, red soil [two complete genomes sequenced for this strain with different MLST sequences; both genomes sequenced by State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, Hubei, China; sequences conflicting with isolate BGSC4BT1#2]	China	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4BT1#2	[two complete genomes sequenced for this strain with different MLST sequences; both genomes sequenced by State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, Hubei, China; sequences conflicting with isolate BGSC4BT1#1]	China	26/26	TH, H, K, CS, P
B.thuringiensis SCG04-02	Soil (1992)	China	26/26	TH, H, K, CS, P
B.cereus BC04#1	Human, faeces/stools (2012)	India	19/26	H, clpc, dinb, glpf, gmk, gyrb, mdh, muts, panc, pyca1, pyca2, rpob, tpi
B.c_group KW17	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.c_group KW47	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P

4 isolate(s) sharing MLST alleles in supercluster 297

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus MYb212	Soil, compost	Germany, Roxel	26/26	TH, H, K, CS, P
B.cereus MOD1Bc88	Food, Whole Black Pepper (2015)	USA, Maryland	26/26	TH, H, K, CS, P
B.cereus MYb220	Soil, compost	Germany, Roxel	26/26	TH, H, K, CS, P
B.cereus MOD1Bc214	Other, Baby Wipes (2016)	USA, Maryland	22/26	P, adk, ccpa, clpc, ftsa, gyrb, mdh, muts, panc, purf, pyca1, pyre, recf, rpob, succ, yhfl

3 isolate(s) sharing MLST alleles in supercluster 298

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group C3i5	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group C3o1	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.cereus SJ1	Other, chromium-contaminated wastewater of a metal electroplating factory [chromate-resistant and reducing isolate]	China, Guangdong	7/26	P

4 isolate(s) sharing MLST alleles in supercluster 299

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.wiedmannii AFS081123	Plant, Corn core (2014)	USA, Illinois	25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.wiedmannii AFS036521	Plant, Tomato plant (2014)	USA, North Carolina	24/26	K, CS, ccpa, ftsa, glpt, gmk, ilvd, pta, purh, pyca2, pyre, recf, succ, tpi
B.wiedmannii AFS023423	Plant, Corn (2014)	USA, Iowa	21/26	K, ccpa, clpc, dinb, ftsa, gmk, ilvd, panc, pta, purf, purh, pyca2, pyre, recf, succ, tpi
B.wiedmannii AFS033387	Soil (2014)	USA, Iowa	20/26	P, adk, ccpa, clpc, dinb, ftsa, gyrb, mdh, muts, pyca1, pyre, recf, rpob, succ

2 isolate(s) sharing MLST alleles in supercluster 300

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus IF69-1	Food (2014) [human vomiting]	China, Hubei Province	7/7	P
B.cereus IF6-2	Food (2014) [emetic toxin/cereulide producer]	China, Hubei Province	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 301

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group E5m10	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P
B.c_group E5m7	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 302

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis BGSC4H4	Animal, Insect, Lepidoptera larvae (1980) [sequences conflicting with isolate T05a01]	Pakistan	7/7	P
B.cereus PC-7	Soil (2016)	China, Shaanxi Province	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 303

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus KBAC4	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.cereus KBAC8	Soil, Forest soil (2000)	France, Versailles	6/6	CS

2 isolate(s) sharing MLST alleles in supercluster 304

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus BFDA96143	Food, rice (2007)	Taiwan, Taipei county	7/7	P
B.cereus BHU2	Soil, forest soil (2016)	India	7/26	P

2 isolate(s) sharing MLST alleles in supercluster 305

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis T10024	(1975)	Pakistan	7/7	P
B.cereus 2002734477	Human, blood (2004) [human septicaemia]	USA	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 306

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS042343	Plant, Corn grainbin dust (2013)	USA, Iowa	22/26	K, P, adk, ccpa, clpc, ftsa, gdpd, panc, pyre, recf, succ
B.cereus AFS079345	Other, excrement (2014)	USA, Iowa	19/26	K, adk, ccpa, clpc, ftsa, gdpd, gmk, panc, pta, pyca2, pyre, recf, succ, tpi
B.cereus E3911	Human, blood (1978)	USA, Texas	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 307

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus S6556a	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.cereus S6556	Soil (2007)	USA, Maryland, Rockville	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 308

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group KW40	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.thuringiensis BGSC4Z1	(1975)	China	7/26	P

2 isolate(s) sharing MLST alleles in supercluster 309

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus KBCD4	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.cereus KBCD5	Soil, Forest soil (2000)	France, Versailles	6/6	CS

2 isolate(s) sharing MLST alleles in supercluster 310

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS070861	Plant, core (2014)	USA, North Carolina	23/26	TH, P, clpc, dinb, ftsa, gdpd, gyrb, mbl, mdh, muts, purf, pyca1, recf, succ
B.cereus AFS040054	Plant, core (2014)	USA, North Carolina	23/26	TH, P, clpc, dinb, ftsa, gdpd, gyrb, mbl, mdh, muts, purf, pyca1, recf, succ

2 isolate(s) sharing MLST alleles in supercluster 311

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group AY14-9	Soil (2012)	Kazakhstan	7/7	P
B.c_group AY15-7	Soil (2012)	Kazakhstan	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 312

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS085794	Plant, Corn leaf (2014)	USA, Illinois	25/25	TH, H, K, P, clpc, dinb, purf, yhfl
B.cereus AFS039342	Plant, Corn leaf (2014)	USA, Illinois	25/25	TH, H, K, P, clpc, dinb, purf, yhfl

2 isolate(s) sharing MLST alleles in supercluster 313

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus DSM336	Soil, garden soil	Germany	7/7	H
B.cereus DSM318	Soil, garden soil	Germany	7/14	H

2 isolate(s) sharing MLST alleles in supercluster 314

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis Bt155		Brazil	7/7	P
B.thuringiensis LFB683	Soil	Brazil	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 315

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 147749.K	Human, wound infection (2004)	UK, Scotland	7/7	P
B.cereus 167181.D	Human, wound infection (2004)	UK, Scotland	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 316

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group BC00002	Dairy products, milk products (2017)	Italy, Apulia	7/7	P
B.wiedmannii AFS077478	Plant, Soybean leaf (2014)	USA, Minnesota	7/26	P

2 isolate(s) sharing MLST alleles in supercluster 317

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS005901	Plant, Soybean core (2014)	USA, Iowa	25/26	TH, H, K, CS, ilvd, purh, tpi
B.cereus AFS056099	Plant, Soybean core (2014)	USA, Iowa	25/26	TH, H, K, CS, ilvd, purh, tpi

2 isolate(s) sharing MLST alleles in supercluster 318

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.wiedmannii AFS004017	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.wiedmannii AFS049329	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P

2 isolate(s) sharing MLST alleles in supercluster 319

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.toyonensis TYU3	Plant, Japanese yew (Taxus cuspidata) (2015)	Korea (South)	26/26	TH, H, K, CS, P
B.toyonensis TYU4	Plant, Japanese yew (Taxus cuspidata) (2015)	Korea (South)	26/26	TH, H, K, CS, P

2 isolate(s) sharing MLST alleles in supercluster 320

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AX		Brazil	7/7	P
B.cereus LFB1181	Animal, Bird [from an outbreak of fatal septicaemia in captive birds]	Brazil	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 321

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus 005-810-6	Human, blood (2003) [human pyrexia]	Japan	7/7	P
B.cereus BGSC6A91	Human, wound infection (2004) [sequences conflicting with isolate 142521.S]	UK, Scotland	7/7	P
B.cereus 144993.A	Human, wound infection (2004)	UK, Scotland	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 322

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis 261-1	Soil (2003)	China, Hebei, Baoding	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4BH1	Food, rice paddy	Thailand	26/26	TH, H, K, CS, P
B.c_group KW31	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 323

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis Bt202		Brazil	7/7	P
B.thuringiensis LFB584	Animal, Insect	Israel	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 324

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis PLBPN13/1	Soil (2012)	Poland	7/7	P
B.thuringiensis PLJAS84/4	Soil (2012)	Poland	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 325

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis YGd22-03	Soil (1992)	China	26/26	TH, H, K, CS, P
B.thuringiensis IPPBIOTSUC1012	Soil, forest park (2011)	China, Beijing	26/26	TH, H, K, CS, P
B.c_group KW49	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 326

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis PLBB01/2	Soil (2012)	Poland	7/7	P
B.thuringiensis PLBB34/5	Soil (2012)	Poland	7/7	P
B.cereus AFS087218	Soil (2014)	USA, North Carolina	7/26	P

2 isolate(s) sharing MLST alleles in supercluster 327

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus NC422	Human, faeces/stools (1982)	Japan	7/7	P
B.thuringiensis c25	Soil (2017)	Korea (South)	7/26	P

2 isolate(s) sharing MLST alleles in supercluster 328

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis Et10/1	Other, Water (2011) [altitude 3997 m.]	Chile, Lirima thermal springs	26/26	TH, H, K, CS, P
B.thuringiensis Lr3/2	Other, Water (2011) [altitude 3997 m.]	Chile, Lirima thermal springs	26/26	TH, H, K, CS, P

3 isolate(s) sharing MLST alleles in supercluster 329

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group MCCC1A00361	Other, sediments (2006)	South China Sea	7/7	P
B.cereus NVH1230/88	Food, oriental stew (1988) [strain responsible for a diarrheal food poisoning outbreak]	Norway	7/7	P
B.thuringiensis FN31	Other, Sediments (2002)	Pacific Ocean	7/26	P

2 isolate(s) sharing MLST alleles in supercluster 330

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.wiedmannii AFS080080	Plant, Corn core (2014)	USA, Illinois	16/26	TH, H, gmk, gyrb, mdh, purh, tpi
B.wiedmannii AFS052302	Plant, Soybean core (2014)	USA, Iowa	16/26	TH, H, gmk, gyrb, mdh, purh, tpi

2 isolate(s) sharing MLST alleles in supercluster 331

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus C1783	Human, faeces/stools (1972) [diarrheal food poisoning; from the same incident as isolates C1784 and C1785]	USA, Florida	7/7	P
B.cereus C1785	Food, soup (1972) [diarrheal food poisoning; from the same incident as isolates C1783 and C1784]	USA, Florida	7/7	P

3 isolate(s) sharing MLST alleles in supercluster 332

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS065816	Plant, Weed leaf (2014)	USA, Indiana	26/26	TH, H, K, CS, P
B.cereus AFS006766	Plant, Weed leaf (2014)	USA, Indiana	26/26	TH, H, K, CS, P
B.cereus AFS029810	Plant, Soybean root (2014)	USA, Minnesota	21/26	TH, P, clpc, ftsa, gyrb, muts, purf, pyca1, pyre, recf, rpob, yhfl

2 isolate(s) sharing MLST alleles in supercluster 333

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group KW8	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.thuringiensis BGSC4AH1	(1994)	Korea (South)	7/26	P

3 isolate(s) sharing MLST alleles in supercluster 334

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis HD1011	(1915)	India	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4BA1	Soil [two complete genomes sequenced for this strain with identical MLST sequences]	India	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4AB1			11/11	TH, P

2 isolate(s) sharing MLST alleles in supercluster 335

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group MCCC1A01412	Other, sediments (2006)	South China Sea	7/7	P
B.anthracis L19	Other, Sediment (2006)	China, South China Sea	7/26	P

4 isolate(s) sharing MLST alleles in supercluster 336

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS041803	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS000724	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS055486	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.cereus AFS003117	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P

2 isolate(s) sharing MLST alleles in supercluster 337

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus B06_013	Human, blood	France	7/7	TH
B.cereus B06_014	Human	France	7/7	TH

2 isolate(s) sharing MLST alleles in supercluster 338

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group B4s6	Soil (2002)	UK, England, Berkshire	7/7	P
B.c_group A3g3	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 339

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus Bc255		Brazil	7/7	P
B.cereus LFB598	Human, faeces/stools	Brazil	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 340

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group A3s8	Soil (2002)	UK, England, Berkshire	7/7	P
B.c_group E2i2	Plant, leaves of broad-leaved dock (Rumex obtusifolius) (2002)	UK, England, Berkshire	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 341

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.mycoides ADDABC113	Dairy products, milk products (2017)	Austria	7/7	P
B.cereus ADDABC31	Dairy products, milk products (2017)	Austria	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 342

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis 1710-S-2	Plant, leaves of clover (Trifolium hybridum) (2004)	UK	7/7	P
B.thuringiensis 286-S-1	Plant, leaves of clover (Trifolium hybridum) (2004)	UK	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 343

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis T68001		Thailand	22/26	CS, adk, ccpa, glpt, gmk, gyrb, ilvd, mbl, mdh, muts, pta, purh, pyre, recf, rpob, succ, tpi
B.c_group VD102	Soil	Guadeloupe	22/26	CS, adk, ccpa, glpt, gmk, gyrb, ilvd, mbl, mdh, muts, pta, purh, pyre, recf, rpob, succ, tpi

2 isolate(s) sharing MLST alleles in supercluster 344

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus Bc213		Brazil	7/7	P
B.cereus LFB1125	Animal, Insect	Madagascar	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 345

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus KBCC7	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.cereus KBCD1	Soil, Forest soil (2000)	France, Versailles	6/6	CS

2 isolate(s) sharing MLST alleles in supercluster 346

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus K15-1330	Human, faeces/stools (2015)	Korea (South)	7/7	P
B.cereus SJ-S6	Human	USA, Tennessee, Memphis	7/25	P

3 isolate(s) sharing MLST alleles in supercluster 347

Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus CMCCP0011	Soil (1984)	China	26/26	TH, H, K, CS, P
B.cereus CMCCP0021	Soil (1979)	China	26/26	TH, H, K, CS, P
B.c_group KM007-1	Food (2006) [human vomiting and diarrhea]	China, Yunnan Province	7/7	P

2 isolate(s) sharing MLST alleles in supercluster 348

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus F3261	Human, faeces/stools (1982) [human bloody diarrhea]	USA	7/7	P
B.cereus A9	(2014)	Australia	7/26	P

2 isolate(s) sharing MLST alleles in supercluster 349

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus AFS005615	Plant, leaf (2014)	USA, North Carolina	19/25	K, adk, ccpa, ftsa, gdpd, glpf, gmk, ilvd, panc, purf, pyre, recf, succ, tpi
B.cereus CZ-2	Soil, paddy soil	China, Nanjing	19/25	K, adk, ccpa, ftsa, gdpd, glpf, gmk, ilvd, panc, purf, pyre, recf, succ, tpi

2 isolate(s) sharing MLST alleles in supercluster 350

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Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.c_group KW24	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.cereus BFDA96163	Food, rice (2007)	Taiwan, Taipei county	7/7	P

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