Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.thuringiensis T01001	Animal, Insect, Mediterranean flour moth/mill moth (Ephestia kuhniella/Anagasta kuehniella) (1958)	Canada	26/26	TH, H, K, CS, P
B.thuringiensis AFS097514	Plant, Soybean leaf (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS073530	Plant, Soybean leaf (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS030961	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4A3	Animal, Insect, silkworm (Bombyx mori) (2013)	UK	26/26	TH, H, K, CS, P
B.thuringiensis AFS098336	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS057829	Plant, Wheat plant (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis ATCC10792#3	Animal, Insect, Mediterranean flour moth/mill moth (Ephestia kuhniella/Anagasta kuehniella) [three complete genomes sequenced for this strain with different sequences and origins; strain sequenced by Biological Defense Research Directorate (BDRD), Rockville, Maryland, USA; sequences conflicting with isolates ATCC10792#1 and ATCC10792#2]	Israel	26/26	TH, H, K, CS, P
B.thuringiensis NA205-3	Other, dust from maize silo	Spain	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4A4	Animal, Insect, tobacco moth/cacao moth/warehouse moth (Ephestia elutella)	UK, England	26/26	TH, H, K, CS, P
B.thuringiensis IS5056	Soil (2005)	Poland, Biebrza National Park	26/26	TH, H, K, CS, P
B.thuringiensis AFS040438	Plant, Corn core (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis CT-43		China	26/26	TH, H, K, CS, P
B.thuringiensis T01328	Soil (1994)	Brazil, Sao Paulo, Cubatao county	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4BP1	Soil, sesame field	Korea (South)	26/26	TH, H, K, CS, P
B.thuringiensis BGSC4BN1	Food, beans	China	26/26	TH, H, K, CS, P
B.thuringiensis AFS052794	Plant, Soybean leaf (2014)	USA, Minnesota	26/26	TH, H, K, CS, P
B.thuringiensis AFS047495	Plant, Corn (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS082247	Plant, Corn leaf (2014)	USA, Illinois	26/26	TH, H, K, CS, P
B.thuringiensis AFS039774	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS010823	Plant, Soybean leaf (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS081620	Plant, Soybean core (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS077661	Plant, Corn root (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS094706	(2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis Bt407	[Pasteur Institute; well studied isolate that has been cured of the plasmid that encodes the insecticidal crystal toxin; three complete genomes sequenced for this strain with identical MLST sequences]	France, Paris	26/26	TH, H, K, CS, P
B.thuringiensis AFS052676	Plant, Soybean leaf (2014)	USA, Iowa	26/26	TH, H, K, CS, P
B.thuringiensis AFS099505	Plant, Soybean core (2014)	USA, Iowa	25/26	H, K, P, clpc, dinb, gdpd, purf, yhfl
B.thuringiensis AFS038158	Plant, Soybean root (2013)	USA, Minnesota	25/26	TH, H, CS, P, gyrb, mbl, mdh, muts, rpob
B.thuringiensis AFS057784	Plant, Corn core (2014)	USA, Illinois	25/26	TH, H, K, CS, gmk, ilvd, purh
B.thuringiensis ATCC10792#2	Animal tissue (1946) [three complete genomes sequenced for this strain with different sequences and origins; strain sequenced by School of Applied Biosciences, Kyungpook National University, Daegu, South Korea; sequences conflicting with isolates ATCC10792#1 and ATCC10792#3]	USA	24/24	TH, K, P, clpc, dinb, ftsa, gdpd, purf, recf, succ
B.thuringiensis AFS060060	Plant, Soybean core (2014)	USA, Iowa	24/26	TH, H, CS, gmk, gyrb, mdh, muts, purh, pyca1, rpob, tpi
B.thuringiensis AFS099341	Plant, Corn leaf (2014)	USA, Illinois	24/26	H, K, CS, glpf, gmk, purh, pyca2, tpi
B.thuringiensis AFS007186	Plant, Corn leaf (2014)	USA, Illinois	24/26	H, K, CS, glpf, gmk, ilvd, purh, pyca2
B.thuringiensis ATCC10792#1	[three complete genomes sequenced for this strain with different sequences and origins; strain sequenced by Department of Food Science and Biotechnology College of Biotechnology and Bioscience, Kangwon National University, Chunchon, South Korea; sequences conflicting with isolates ATCC10792#2 and ATCC10792#3]		23/23	P, ccpa, dinb, ftsa, gdpd, glpt, gyrb, mbl, mdh, muts, panc, purf, pyca1, pyre, recf, succ, yhfl
B.thuringiensis AFS098506	Plant, Corn root (2014)	USA, Iowa	23/26	K, CS, adk, ftsa, glpf, glpt, gmk, ilvd, pta, pyca2, recf, succ, tpi
B.thuringiensis AFS011848	Plant, Soybean core (2014)	USA, Iowa	22/26	TH, H, clpc, gdpd, gmk, gyrb, ilvd, mbl, mdh, muts, rpob, tpi, yhfl
B.thuringiensis AFS058254	Plant, Soybean leaf (2014)	USA, Minnesota	22/26	K, P, clpc, ftsa, glpt, panc, purf, pyre, recf, succ, yhfl
B.thuringiensis AFS001991	Plant, Corn leaf (2014)	USA, Illinois	21/26	TH, H, CS, gyrb, mbl, mdh, purh, rpob
B.thuringiensis T01058	(1964)	Switzerland	7/7	P
B.thuringiensis BGSC4A2	[Wild type isolate]		7/7	P
B.thuringiensis BGSC4A1#2	(1915) [Wild type isolate; sequences conflicting with isolate BGSC4A1#1]		7/7	P
B.thuringiensis T01015	(1962)	Bulgaria	7/7	P
B.thuringiensis BGSC4D3	[Wild type isolate]		7/7	P
B.thuringiensis BGSC4A8			7/7	P
B.c_group DVM_30	Soil	Japan	7/7	P
B.thuringiensis BGSC4A1#1	(1915) [Wild type isolate; sequences conflicting with isolate BGSC4A1#2]		7/7	P
B.thuringiensis IBL425	Soil (1983)	USA, New York	7/7	P
B.thuringiensis T01022	Animal, earthworm/redworm (Eisenia foetida) (1964)	USA	7/7	P
B.thuringiensis BGSC4A7	[acrystalliferous]		7/7	P
B.thuringiensis BGSC4A6	[Wild type isolate]		7/7	P
B.thuringiensis T01326	Soil (1994)	Chile	7/7	P
B.c_group KW33	[Children-s Hospital Oakland Research Institute (CHORI)]	USA, California	7/7	P
B.thuringiensis BGSC4A5		Czechoslovakia	7/7	P
B.thuringiensis KBBF3	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBB7	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBB5	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBB8	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBF4	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBB6	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBF2	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBF6	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBE5	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBB4	Soil, Forest soil (2000)	France, Versailles	6/6	CS
B.thuringiensis KBBF1	Soil, Forest soil (2000)	France, Versailles	6/6	CS