Strain	Source	Location	Shared / Total Loci	Shared Scheme(s) and/or Loci
B.cereus FSLR5-0811	Dairy products, pasteurized milk (2006)	USA	26/26	TH, H, K, CS, P
B.weihenstephanensis FSLR5-860	Dairy products, pasteurized milk (2006)	USA	26/26	TH, H, K, CS, P
B.cereus FSLM8-0473	(2015)	USA	26/26	TH, H, K, CS, P
B.cereus FORC024	Food, chicken soup	Korea (South), Incheon	26/26	TH, H, K, CS, P
B.cereus BDRD-Cer4	[Biological Defense Research Directorate (BDRD)]	USA, Maryland, Rockville	26/26	TH, H, K, CS, P
B.cereus AFS012400	Plant, Cucumber plant (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus 16-00196			26/26	TH, H, K, CS, P
B.cereus AH725	Human, eye (1995)	Norway, Skien	26/26	TH, H, K, CS, P
B.cereus B4155	Food (2013)	Netherlands	26/26	TH, H, K, CS, P
B.c_group VD045	Soil	Greenland	26/26	TH, H, K, CS, P
B.cereus 16SBCL1279	Human, Breast milk (2016)	France, Ile-de-France Lactarium, Paris	26/26	TH, H, K, CS, P
B.cereus AFS011918	Plant, core (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.cereus FORC021	Other, Knife	Korea (South), Ulsan	26/26	TH, H, K, CS, P
B.cereus AFS053406	Plant, Corn plant (2014)	USA, North Carolina	26/26	TH, H, K, CS, P
B.thuringiensis Pasteur_Standard	[two complete genomes sequenced for this strain with identical MLST sequences]		25/26	TH, H, CS, P, gyrb, mdh, muts, pyca1, rpob
B.cereus BHU1	Soil, Cropfield soil (2016)	India	25/26	TH, H, K, P, clpc, dinb, gdpd, yhfl
B.cereus MOD1Bc92	Food, Whole Black Pepper (2015)	USA, Maryland	25/26	TH, H, CS, P, mbl, mdh, muts, pyca1, rpob
B.cereus F4430/73	Other, pea soup or faeces/stools (1973) [diarrheal food poisoning outbreak]	Belgium	25/26	TH, H, K, P, clpc, dinb, gdpd, purf
B.cereus MOD1Bc218	Other, Baby Wipes (2016)	USA, Maryland	25/26	K, CS, P, adk, ccpa, ftsa, pyre, recf, succ
B.cereus LK9	(2010)	Malaysia, Malacca	25/26	TH, H, CS, P, gyrb, mbl, mdh, pyca1, rpob
B.cereus SJ-S27	Human	USA, Tennessee, Memphis	25/26	TH, H, K, CS, gmk, purh, tpi
B.cereus A8S3	Other, Sediments (2003)	Pacific Ocean	25/26	TH, H, CS, P, gyrb, mbl, mdh, pyca1, rpob
B.cereus 16-00198			25/26	TH, H, K, P, clpc, dinb, gdpd, yhfl
B.cereus AFS070416	Plant, core (2014)	USA, North Carolina	25/26	TH, H, K, P, dinb, gdpd, purf, yhfl
B.c_group VD169	Soil	UAE, Dubai	25/26	TH, K, CS, P, ftsa, pyre, succ
B.cereus INRAC3	Food, pasteurized carrot (1996) (1996)	France, Vaucluse	25/26	TH, H, K, P, dinb, gdpd, purf, yhfl
B.cereus Co15	Other, Sediments (2003)	Pacific Ocean	24/26	K, P, adk, clpc, dinb, ftsa, gdpd, glpt, panc, pyre, recf, succ, yhfl
B.c_group VD166	Soil	UAE, Dubai	24/26	TH, H, K, P, dinb, gdpd, yhfl
B.cereus B4081	Food (2013)	Netherlands	24/26	TH, H, P, clpc, dinb, gdpd, gyrb, mbl, mdh, purf, pyca1, rpob
B.cereus 16-00184			24/26	TH, H, P, clpc, dinb, gdpd, gyrb, mdh, muts, purf, pyca1, rpob
B.cereus FSLK6-1030	Dairy products, condensed milk (2013)	USA	24/26	TH, H, K, P, clpc, dinb, gdpd
B.cereus MOD1Bc230	Food, food product (2016)	USA, Maryland	24/26	TH, H, P, clpc, gdpd, mbl, mdh, muts, purf, pyca1, rpob, yhfl
B.cereus C1L	Soil or plant, rhizosphere (2003)	Taiwan, Taroko National Park, Hualien	23/25	H, K, clpc, dinb, gdpd, glpf, gmk, ilvd, purf, purh, pyca2, yhfl
B.cereus SJ-S23	Human	USA, Tennessee, Memphis	23/25	TH, K, clpc, dinb, gdpd, gmk, purf, purh, pyre, recf, succ, tpi
B.cereus B4120	Food (2013)	Netherlands	23/26	TH, H, P, clpc, dinb, gdpd, mbl, muts, pyca1, rpob, yhfl
B.thuringiensis T69001		Malaysia	23/26	TH, K, P, clpc, dinb, ftsa, purf, pyre, succ
B.cereus ATCC14579	Other, Farm, cow-shed air (1916)	USA	23/26	TH, K, CS, ftsa, ilvd, purh, recf, succ
B.cereus Rock1-15	Soil	USA, Maryland, Rockville	22/26	K, P, adk, clpc, dinb, ftsa, gdpd, glpt, panc, recf, succ
B.cereus E41	Other, salt lake (2016)	Algeria, Ain Mlila-Oum El Bouaghi	22/26	H, clpc, dinb, gdpd, gmk, gyrb, ilvd, mbl, muts, panc, pta, purh, pyca1, pyca2, rpob, tpi
B.cereus MOD1Bc86	Food, Whole Black Pepper (2015)	USA, Maryland	22/26	TH, H, clpc, dinb, gdpd, gmk, gyrb, ilvd, mdh, muts, purh, pyca1, rpob
B.thuringiensis BGSC4BW1		Spain	22/26	H, P, clpc, dinb, gdpd, gyrb, mbl, muts, pyca1, rpob
B.cereus MOD1Bc85	Food, Ground Black Pepper (2015)	USA, Maryland	21/26	K, adk, dinb, ftsa, gdpd, glpf, glpt, gmk, panc, purf, purh, pyca2, pyre, recf, succ, tpi
B.cereus SJ-S9	Human	USA, Tennessee, Memphis	20/20	TH, CS, ilvd, mbl, mdh, purh, recf, rpob, succ, tpi
B.thuringiensis BGSC4H2	(1968)	Canada	20/26	TH, clpc, dinb, ftsa, gdpd, gyrb, ilvd, mbl, mdh, purh, pyca1, recf, rpob, succ
B.thuringiensis BGSC4CF1		Malaysia	19/26	K, adk, clpc, dinb, glpf, glpt, gmk, ilvd, panc, pta, purh, pyca2, pyre, succ
B.c_group VD196	Soil	UAE, Dubai	18/26	H, dinb, gmk, gyrb, ilvd, mbl, mdh, panc, pyca1, pyca2, rpob, tpi
B.c_group AH716	Human, pus	Norway, Skien	11/11	TH, H
B.c_group AH1294	Human, blood	Norway, Tromsoe	11/11	TH, H
B.c_group AH889	Human, blood	Norway	11/11	TH, H
B.c_group AH1293	Human, blood	Norway, Tromsoe	11/11	TH, H
B.c_group AH726	Human, urine	Norway, Skien	11/11	TH, H
B.c_group K15_115	(2014)	Korea (South)	7/7	P
B.cereus R_2955/03	Human, blood (2003) [human septicaemia]	UK, England	7/7	P
B.thuringiensis T09010	(1979)	USA	7/7	P
B.cereus B548			7/7	P
B.cereus BC_32	Food, ready-to-eat product (2006)	Italy (Northwestern)	7/7	P
B.cereus 108229.N	Human, wound infection (2004)	UK, Scotland	7/7	P
B.cereus NC1292	Food, rice (1999)	Japan	7/7	P
B.cereus CBC_99006	Human, diarrhea	Japan	7/7	P
B.c_group BC00001	Dairy products, milk products (2017)	Italy, Apulia	7/7	P
B.cereus 134070.J	Human, wound infection (2004)	UK, Scotland	7/7	P
B.cereus Sve1	Human, blood (2003)	Italy	7/7	P
B.c_group FSLR5-0859	Dairy products, milk products (2006)	USA	7/7	P
B.cereus XA12-18	Dairy products, milk products (2012)	China	7/7	P
B.cereus F6722	Food (1985) [diarrheal food poisoning]	USA, Alabama	7/7	P
B.cereus R_3149/03	Human, blood (2003) [human septicaemia]	UK, England	7/7	P
B.cereus NC1225	Human, faeces/stools (1996)	Japan	7/7	P
B.thuringiensis BGSC4L5	(1990) [sequences conflicting with isolate T09020]	Italy	7/7	P
B.cereus 149041.S	Human, wound infection (2004)	UK, Scotland	7/7	P
B.thuringiensis T09052	Other, spider web (1999)	Canada	7/7	P
B.thuringiensis T09011	Animal, Insect, Lepidoptera (1987)	Iraq	7/7	P
B.c_group MCCC1A00495	Other, sediments (2005)	Pacific Ocean	7/7	P
B.c_group MCCC1A06185	Other, middle seawater (2009)	Pacific Ocean	7/7	P
B.cereus CBC_03004	Human, diarrhea	Japan	7/7	P
B.c_group K14_4528	(2014)	Korea (South)	7/7	P
B.cereus BC_5	Food, egg product (2006)	Italy (Southern)	7/7	P
B.c_group MCCC1A06184	Other, surface seawater (2009)	Pacific Ocean	7/7	P
B.cereus NC499	Food (1983)	Japan	7/7	P
B.cereus LFB541	Food, Rice cream (1982)	Brazil	7/7	TH
B.c_group MCCC1A01400	Other, sediments (2006)	Indian Ocean	7/7	P
B.cereus F2668/90	Food, lamb (1990) [diarrheal food poisoning outbreak]	Netherlands	7/7	P
B.cereus S6566	Soil (2007)	USA, Maryland, Rockville	7/7	P
B.c_group MCCC1A00432	Other, sediments (2005)	Pacific Ocean	7/7	P
B.cereus 2003-I-1254	Human, blood (2003) [human, fatal]	USA, Oregon	7/7	P
B.cereus BGSC6A42	Food packaging [sequences conflicting with isolate TSP8]		7/7	P
B.cereus 200593.X	Human, wound infection (2004)	UK, Scotland	7/7	P
B.thuringiensis T09034	(1992)	Brazil	7/7	P
B.cereus K15-3447	Human, faeces/stools (2015)	Korea (South)	7/7	P
B.cereus BFDA96117	Food (2007)	Taiwan, Taoyuan county	7/7	P
B.cereus F99/5941	Other, environmental (1999) [food-water-environment survey isolate]		7/7	P
B.c_group MCCC1A08490	Other, sediments (2011)	Arctic Ocean	7/7	P
B.c_group MCCC1A01874	Other, sediments (2006)	Pacific Ocean	7/7	P
B.c_group MCCC1A00298	Other, sediments (2006)	Pacific Ocean	7/7	P
B.cereus BC_17	Food, egg product (2006)	Italy (Southern)	7/7	P
B.cereus BC_29	Food, ready-to-eat product (2006)	Italy (Northwestern)	7/7	P
B.c_group MCCC1A00418	Other, sediments (2005)	Pacific Ocean	7/7	P
B.cereus EFBC85	Food (2017)	Austria	7/7	P
B.thuringiensis IBL695	Soil (1976)	Hawaii	7/7	P
B.thuringiensis T09024	(1991)	Indonesia	7/7	P
B.c_group MCCC1A06183	Other, bottom seawater (2009)	Pacific Ocean	7/7	P
B.cereus 177147.Y	Human, wound infection (2005)	UK, Scotland	7/7	P
B.cereus BFDA96166	Food, rice (2007)	Taiwan, Taipei county	7/7	P
B.c_group MCCC1A00360	Other, sediments (2006)	Pacific Ocean	7/7	P
B.cereus BFDA95192	(2006)	Taiwan, Taipei county	7/7	P
B.cereus D8096	Human, blood (1971)	USA, Louisiana	7/7	P
B.c_group MCCC1A08292	Other, sediments (2011)	Arctic Ocean	7/7	P
B.cereus 2003-I-1253	Human, blood (2003) [human septicaemia, fatal]	USA, Oregon	7/7	P
B.c_group MCCC1A04083	Other, surface seawater (2009)	Pacific Ocean	7/7	P
B.thuringiensis BGSC4L1	Animal, Insect, Almond moth (Cadra cautella) [sequences conflicting with isolate HD125]	UK, England	7/7	P
B.cereus 000-843-51	Human, blood (2004) [human pneumonia]	Japan	7/7	P
B.cereus G2008	Human, faeces/stools (1988) [food poisoning]	USA, Pennsylvania	7/7	P
B.thuringiensis BGSC4L2	Animal, Insect, Almond moth (Ephestia cautella/Cadra cautella)	UK, England	7/7	P
B.cereus BC_9	Food, egg product (2006)	Italy (Southern)	7/7	P
B.cereus 201183.D	Human, wound infection (2003)	UK, Scotland	7/7	P
B.cereus 653-154-7	Human, blood (2003) [human pneumonia]	Japan	7/7	P
B.cereus HF16	Food (2014)	Germany, Berlin	7/7	P
B.cereus B06_036	Human, blood	Tahiti, Papeete	7/7	TH