$VAR1 = 'page'; $VAR2 = 'browseidenticalsuperisolates'; $VAR3 = 'dbase'; $VAR4 = 'superdb'; $VAR5 = 'file'; $VAR6 = 'bcereusgrp_isolates.xml'; Expires: Wed, 19 May 2021 07:33:26 GMT Date: Tue, 18 May 2021 07:33:26 GMT Content-Type: text/html; charset=ISO-8859-1 Bacillus cereus group Multi-Scheme MLST SuperDatabase

Bacillus cereus group MLST Profiles Browsing

Here you can browse and download the complete lists of MLST genotyping profiles, that have been precomputed using all 5106 isolates available in the database. Several lists are provided:

Gene sequences for each profile can be obtained and downloaded.
The phylogenetic position of the isolates can also be mapped on the multi-scheme MLST supertree.
To build lists of genotyping profiles and groups of identical isolates using selected subsets of isolates and schemes, use the "Find similar isolates" function in the SuperCAT Home page.

The 5106 selected isolates that have been typed by one or more MLST schemes represent 3120 distinct genotyping superprofiles, which can be browsed here.

In addition, for each individual MLST scheme there are:
1084 distinct profiles (1045 STs and 39 incomplete profiles) for the 2546 isolates that have been typed by the Candelon-Sorokin MLST scheme.
898 distinct profiles (840 STs and 58 incomplete profiles) for the 2529 isolates that have been typed by the Helgason MLST scheme.
900 distinct profiles (867 STs and 33 incomplete profiles) for the 2464 isolates that have been typed by the Ko MLST scheme.
2222 distinct profiles (2182 STs and 39 incomplete profiles) for the 4779 isolates that have been typed by the Priest MLST scheme.
1080 distinct profiles (1029 STs and 51 incomplete profiles) for the 2584 isolates that have been typed by the Tourasse-Helgason MLST scheme.

Click a scheme link to obtain a detailed composition of the groups of identical isolates for the given scheme.