$VAR1 = 'page'; $VAR2 = 'compareconflictinghypertrees'; $VAR3 = 'dbase'; $VAR4 = 'hyperdb'; $VAR5 = 'file'; $VAR6 = 'bcereusgrp_isolates.xml'; Expires: Wed, 27 Jan 2021 00:13:31 GMT Date: Tue, 26 Jan 2021 00:13:31 GMT Content-Type: text/html; charset=ISO-8859-1 Bacillus cereus group Multi-Datatype MLST+AFLP+MLEE SuperDatabase

Bacillus cereus group Conflicting Isolates: MLST, AFLP, and MLEE Tree Comparison

Here you can browse the precomputed trees based on the individual MLST schemes and AFLP and MLEE studies, and explore the positions of the 0 strains showing conflicting phylogenetic typing data. For this, the conflicting isolates can be highlighted in a different color and subtrees containing only the conflicting strains can be extracted. Also, branches in the trees will be colored according to the main phylogenetic clusters of the Bacillus cereus group population to help in the visualization of strains that are located in different clusters in different trees. For each scheme or study, the tree contains all isolates typed by that scheme or study. In the case of MLST schemes, the tree shown for a given scheme is the supertree based on all 6 or 7 loci for that scheme (for details see the MLST schemes and Supertree Info pages of SuperCAT). All trees will be available for download when they are displayed. Choose or define your browsing criteria below. The trees will be displayed using the Java Archaeopteryx tree viewer and detailed browsing can be achieved using the various tools offered by the software.

The 5886 strains you selected have been typed using one or several of the typing methods below. By default, trees for the DNA-based methods (MLST and AFLP) only will be displayed, however you may select any set of methods if you like (using the checkboxes).

Methods:   

5106 isolates862 isolates316 isolates