$VAR1 = 'page'; $VAR2 = 'browseidenticalhyperisolates'; $VAR3 = 'dbase'; $VAR4 = 'hyperdb'; $VAR5 = 'file'; $VAR6 = 'bcereusgrp_isolates.xml'; Expires: Wed, 19 May 2021 07:57:47 GMT Date: Tue, 18 May 2021 07:57:47 GMT Content-Type: text/html; charset=ISO-8859-1 Bacillus cereus group Multi-Datatype MLST+AFLP+MLEE SuperDatabase

Bacillus cereus group MLST, AFLP, and MLEE Profiles Browsing

Here you can browse and download the complete lists of MLST, AFLP, and MLEE genotyping profiles, that have been precomputed using all 5886 isolates available in the database. Several lists are provided:

For MLST data, gene sequences for each profile can be obtained and downloaded.
The phylogenetic position of isolates having a given genotyping profile can also be mapped onto the MLST+AFLP supertree for profiles based on MLST and/or AFLP, or onto the MLST+AFLP+MLEE supertree for profiles including MLEE data.
To build lists of genotyping profiles and groups of identical isolates using selected subsets of isolates and typing methods, use the "Find similar isolates" function in the HyperCAT Home page.

The 5886 selected isolates that have been typed by MLST, AFLP and/or MLEE represent 3810 distinct genotyping superprofiles, which can be browsed here. The 5816 isolates that have been typed by the DNA-based methods MLST and/or AFLP represent 3725 distinct genotyping superprofiles, which can be browsed here.

In addition, for each individual typing method, scheme, or study there are:
1084 distinct profiles (1045 STs and 39 incomplete profiles) for the 2546 isolates that have been typed by the Candelon-Sorokin MLST scheme.
898 distinct profiles (840 STs and 58 incomplete profiles) for the 2529 isolates that have been typed by the Helgason MLST scheme.
900 distinct profiles (867 STs and 33 incomplete profiles) for the 2464 isolates that have been typed by the Ko MLST scheme.
2222 distinct profiles (2182 STs and 39 incomplete profiles) for the 4779 isolates that have been typed by the Priest MLST scheme.
1080 distinct profiles (1029 STs and 51 incomplete profiles) for the 2584 isolates that have been typed by the Tourasse-Helgason MLST scheme.
178 distinct profiles for the 332 isolates that have been typed by the Hill AFLP study.
107 distinct profiles for the 166 isolates that have been typed by the Ticknor AFLP study.
373 distinct profiles for the 425 isolates that have been typed by the Guinebretiere AFLP study.
182 distinct profiles for the 316 isolates that have been typed by Helgason MLEE study.

Click a scheme or method link to obtain a detailed composition of the groups of identical isolates for the given scheme or method.