B. cereus group Conflicting Isolates

Below is the list of the 19 isolates that have been excluded from the Tourasse-Helgason MLST database because their genotyping profiles are unreliable. Isolates highlighted in purple exhibit conflicting phylogenetic positions among MLST schemes and/or typing methods, and isolates highlighted in red exhibit conflicting typing data from different collections or databases. Even though typing data from the Tourasse-Helgason scheme only are considered in the current database, the fact that, for some isolates, other MLST schemes or typing methods (such as AFLP and MLEE) give different phylogenetic results indicate that the phylogenetic positions of those particular isolates are uncertain, and therefore the isolates are not taken into account here.
A comparison of the phylogenetic positions of the conflicting isolates based on data from the TH scheme and other MLST schemes and typing methods can be obtained using the tools provided in the multi-scheme SuperCAT and multi-datatype HyperCAT databases.



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Click here to save the table as a tab-delimited text file. Click on strain name to get full information and sequences for a given isolate. Alternative strain names are given in parentheses in the strain description. Species name "B.c_group" represents uncharacterized B.cereus group strains. G indicates isolates with completely sequenced genomes.
straindescriptionsourcelocation
 AH676B.c_group AH676Soil, heather soil (1994) [data from University of Oslo, Norway; sequences conflicting with isolate AH676BDRD]Norway, Tromso
 AH721B.c_group AH721Human, urineNorway, Skien
 AH830B.c_group AH830Human, periodontitis (1995)Norway, Oslo
 WSBC10204B.weihenstephanensis type strain WSBC10204 (DSM11821, AH1145, KB008)Dairy products, Milk (1992) [MLST data conflicting with isolate DSM11821; from the same dairy as isolates WSBC10028, WSBC10029, WSBC10030, WSBC10031, WSBC10042, WSBC10201, WSBC10205, WSBC10206, WSBC10208, and WSBC10211]Germany, Weihenstephan
 AH717B.c_group AH717Human, skinNorway, Skien
 AH719B.c_group AH719Human, cervixNorway, Skien
 AH720B.c_group AH720Human, bloodNorway, Skien
 AH1271GB.cereus AH1271Other, secretary lamp; Reykjavik University Hospital (1999) [from the same hospital as isolates AH1270, AH1272, and AH1273]Iceland, Reykjavik
 AH1272GB.cereus AH1272Human, amniotic fluid; Reykjavik University Hospital (1999) [from the same hospital as isolates AH1270, AH1271, and AH1273]Iceland, Reykjavik
 AH1273GB.cereus AH1273Human, blood; Reykjavik University Hospital (1997) [from the same hospital as isolates AH1270, AH1271, and AH1272]Iceland, Reykjavik
 AH603GB.c_group AH603DairyNorway, Gjovik
 AH676BDRDGB.c_group AH676 (AH676BDRD)Soil, heather soil (1994) [strain sequenced at Biological Defense Research Directorate (BDRD), Rockville, Maryland, USA; sequences conflicting with isolate AH676]Norway, Tromso
 BGSC4AW1#1GB.thuringiensis andalousiensis BGSC4AW1 (T37001, BGSC4AW1#1)[strain sequenced at Biological Defense Research Directorate (BDRD), Rockville, Maryland, USA; sequences conflicting with isolates BGSC4AW1#2 and T37001]Spain
 MM_3GB.cereus MM3 (MM_3)Food (2003)USA
 HD1#1GB.thuringiensis kurstaki HD1 (HD1#1)Soil (1970) [MLST data conflicting with isolates BGSC4D1, ATCC33679, and HD1#2; three complete genomes sequenced for this strain: identical MLST sequences between isolates HD1#1 and HD1#3 and different sequences in isolate HD1#2]USA
 HD1#2GB.thuringiensis kurstaki HD1 (HD1#2)Animal, Insect, Pink Bollworm (Pectinophora gossypiella) (1970) [MLST data conflicting with isolates BGSC4D1, ATCC33679, HD1#1, and HD1#3; three complete genomes sequenced for this strain: identical MLST sequences between isolates HD1#1 and HD1#3 and different sequences in isolate HD1#2]USA
 HD1#3GB.thuringiensis kurstaki HD1 (HD1#3)Animal, Insect larvae (2000) [MLST data conflicting with isolates BGSC4D1, ATCC33679, and HD1#2; three complete genomes sequenced for this strain: identical MLST sequences between isolates HD1#1 and HD1#3 and different sequences in isolate HD1#2]USA
 YBT-1520#1GB.thuringiensis kurstaki YBT-1520 (YBT-1520#1)Soil (1990) [two complete genomes sequenced for this strain with different MLST sequences; sequences conflicting with isolate YBT-1520#2]China
 YBT-1520#2GB.thuringiensis kurstaki YBT-1520 (YBT-1520#2)[two complete genomes sequenced for this strain with different MLST sequences; sequences conflicting with isolate YBT-1520#1] 

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