B. cereus group Conflicting Isolates

Below is the list of the 65 isolates that have been excluded from the main HyperCAT database because their genotyping profiles are unreliable. Isolates highlighted in purple exhibit conflicting phylogenetic positions among MLST schemes and/or typing methods, and isolates highlighted in red exhibit conflicting typing data from different collections or databases, or originate from mixed populations.
A comparison of the phylogenetic positions of the conflicting isolates based on data from the various MLST schemes and AFLP and MLEE typing methods can be obtained using the tools provided here.



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Click here to save the table as a tab-delimited text file. Click on strain name to get full information and sequences for a given isolate. Alternative strain names are given in parentheses in the strain description. Species name "B.c_group" represents uncharacterized B.cereus group strains. G indicates isolates with completely sequenced genomes.
Note: MLST schemes are abbreviated as follows: TH, Tourasse−Helgason; H, Helgason; K, Ko; P, Priest; CS, Candelon−Sorokin.
AFLP studies are abbreviated as follows: AFLP1, Ticknor; AFLP2, Hill; AFLP3, Guinebretiere
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straindescriptionsourcelocationtyping data
 BGSC4CD1B.thuringiensis graciosensis BGSC4CD1 (T66001, EA15196)SoilAzoresP,AFLP3
 BGSC4CB1B.thuringiensis azorensis BGSC4CB1 (T64001, EA11996)SoilAzoresP,AFLP3
 WSBC10204B.weihenstephanensis type strain WSBC10204 (DSM11821, AH1145, KB008)Dairy products, Milk (1992) [MLST data conflicting with isolate DSM11821; from the same dairy as isolates WSBC10028, WSBC10029, WSBC10030, WSBC10031, WSBC10042, WSBC10201, WSBC10205, WSBC10206, WSBC10208, and WSBC10211]Germany, WeihenstephanCS,H,P,TH
 AH717B.c_group AH717Human, skinNorway, SkienTH,MLEE
 AH526B.c_group AH526Soil, strawberry field (1993)Norway, MossAFLP1,AFLP2,MLEE
 ATCC10206B.mycoides NRS936 (NCTC2603, NCIB8096, CIP105443, ATCC10206)[data from Kim et al. 2005, Yale J. Biol. Med. 78, 1-14; sequences conflicting with isolates R25 and NRS936] P
 AH640B.c_group AH640Soil, heather soil (1994)Norway, Singsas/SaeterengAFLP1,AFLP2,MLEE
 AH581B.c_group AH581Soil, beech grove (1993)Norway, MossAFLP1,MLEE
 IMSNU12078B.cereus IMSNU12078 (ATCC21768, KCTC1014)Animal, chicken and turkey manureturkey and chicken manure [data from Ko et al. 2004, Infect. Immunity 72, 5253-5261; sequences conflicting with isolate KCTC1014; data from Ko et al. 2004, Infect. Immunity 72, 5253-5261; sequences conflicting with isolate KCTC1014] K
 R25B.mycoides NCTC2603 (ATCC10206, NCIB8096, R25)[data from NERC Centre for Population Biology, London, England, UK; sequences conflicting with isolates NRS936 and ATCC10206]UK, England, LondonP
 ATCC33679B.thuringiensis kurstaki ATCC33679 (KCTC1507, AH1084, NRRLB-3792, HD1)Animal, diseased insect larvae [MLST, AFLP, and MLEE data conflicting with isolate BGSC4D1; MLST data conflicting with isolates HD1#1, HD1#2, and HD1#3] K,P,AFLP1,AFLP2,AFLP3,MLEE
 RIVMBC964AB.cereus RIVMBC964A (KAL764)Food, kebab (2002) [strains RIVMBC964A and RIVMBC964B correspond to mixed populations obtained from the same culture] AFLP3
 T07196B.thuringiensis aizawai LFB891 (BGSC4J8, T07196)Food, pepper (1993) [data from http://pubmlst.org/bcereus/; sequences conflicting with isolate LFB891]BrazilP
 AH676BDRDGB.c_group AH676 (AH676BDRD)Soil, heather soil (1994) [strain sequenced at Biological Defense Research Directorate (BDRD), Rockville, Maryland, USA; sequences conflicting with isolate AH676]Norway, TromsoCS,H,K,P,TH
 AH555B.c_group AH555Soil, cabbage field (1993)Norway, MossAFLP1,MLEE
 BGSC4AW1#2B.thuringiensis T37001 (BGSC4AW1, BGSC4AW1#2)[sequences conflicting with isolates BGSC4AW1#1 and T37001]SpainP
 BGSC4U1B.thuringiensis kyushuensis BGSC4U1 (HD541, 74-F-6-18, DSM6079, T11a001)Animal, insect, silkworm (Bombyx mori) [sequences conflicting with isolate HD541]JapanP
 AH558B.c_group AH558Soil, beech grove (1993)Norway, MossAFLP1,AFLP2,MLEE
 KCTC1034B.thuringiensis IMSNU12086 (KCTC1034, ATCC10792, KCTC3452)Animal, Insect, Mediterranean flour moth/mill moth (Ephestia kuhniella/Anagasta kuehniella) [data from Ko et al. 2004, Infect. Immunity 72, 5253-5261 and Kim et al. 2005, Yale J. Biol. Med. 78, 1-14; sequences conflicting with isolate ATCC10792] K,P
 YBT-1520#2GB.thuringiensis kurstaki YBT-1520 (YBT-1520#2)[two complete genomes sequenced for this strain with different MLST sequences; sequences conflicting with isolate YBT-1520#1] CS,H,K,P,TH
 BGSC4AU1B.thuringiensis higo T44001 (BGSC4AU1, 92-KU-137-4)Animal, Insect, litter of silkworm (Bombyx mori)JapanH,P,AFLP3
 LFB891B.thuringiensis aizawai LFB891Food, black pepper (1994) [data from Zahner et al. 2013, Mem. Inst. Oswaldo Cruz. 108, 65-72; sequences conflicting with isolate T07196]BrazilP
 HD1B.thuringiensis kurstaki HD1Animal, Insect, diseased larvae of Pink Bollworm (Pectinophora gossypiella) (1970) [due to conflicting MLST data between isolates HD1#1, HD1#2, and HD1#3 it cannot be determined to which isolate the AFLP and MLEE data correspond to]USAAFLP2,MLEE
 YBT-1520#1GB.thuringiensis kurstaki YBT-1520 (YBT-1520#1)Soil (1990) [two complete genomes sequenced for this strain with different MLST sequences; sequences conflicting with isolate YBT-1520#2]ChinaCS,H,K,P,TH
 RIVMBC964BB.cereus RIVMBC964B (KAL764)Food, kebab (2002) [strains RIVMBC964A and RIVMBC964B correspond to mixed populations obtained from the same culture] AFLP3
 HD1#2GB.thuringiensis kurstaki HD1 (HD1#2)Animal, Insect, Pink Bollworm (Pectinophora gossypiella) (1970) [MLST data conflicting with isolates BGSC4D1, ATCC33679, HD1#1, and HD1#3; three complete genomes sequenced for this strain: identical MLST sequences between isolates HD1#1 and HD1#3 and different sequences in isolate HD1#2]USACS,H,K,P,TH
 AH559B.c_group AH559Soil, beech grove (1993)Norway, MossAFLP1,AFLP2,MLEE
 AH575B.c_group AH575Soil, beech grove (1993)Norway, MossAFLP1,AFLP2,MLEE
 R109B.weihenstephanensis type strain DSM11821 (WSBC10204, R109)Dairy products, milk products [data from NERC Centre for Population Biology, London, England, UK; sequences conflicting with isolates WSBC10204 and DSM11821]GermanyP
 SDASU106BB.mycoides SDASU106BDairy products, milk [from dairy silo tank; strains SDASU106A and SDASU106B correspond to mixed populations obtained from the same culture] AFLP3
 R26B.mycoides NCTC12974 (ATCC6462, DSM2048, R26)Soil [data from NERC Centre for Population Biology, London, England, UK; sequences conflicting with isolate ATCC6462]UK, England, LondonP
 IMSNU12079B.cereus IMSNU12079 (KCTC1092, ATCC10876)Other, contaminated flask [data from Ko et al. 2004, Infect. Immunity 72, 5253-5261; sequences conflicting with isolate ATCC10876] K
 AH676B.c_group AH676Soil, heather soil (1994) [data from University of Oslo, Norway; sequences conflicting with isolate AH676BDRD]Norway, TromsoH,TH,AFLP1,MLEE
 T37001B.thuringiensis andalousiensis BGSC4AW1 (T37001)[data from Kim et al. 2005, Yale J. Biol. Med. 78, 1-14; sequences conflicting with isolates BGSC4AW1#1 and BGSC4AW1#2]SpainP,AFLP3
 R2B.thuringiensis DSM350 (R2)[sequences conflicting with isolate DSM350] P
 AH1272GB.cereus AH1272Human, amniotic fluid; Reykjavik University Hospital (1999) [from the same hospital as isolates AH1270, AH1271, and AH1273]Iceland, ReykjavikCS,H,K,P,TH
 AH603GB.c_group AH603DairyNorway, GjovikCS,H,K,P,TH,MLEE
 AH1271GB.cereus AH1271Other, secretary lamp; Reykjavik University Hospital (1999) [from the same hospital as isolates AH1270, AH1272, and AH1273]Iceland, ReykjavikCS,H,K,P,TH
 BGSC4AW1#1GB.thuringiensis andalousiensis BGSC4AW1 (T37001, BGSC4AW1#1)[strain sequenced at Biological Defense Research Directorate (BDRD), Rockville, Maryland, USA; sequences conflicting with isolates BGSC4AW1#2 and T37001]SpainCS,H,K,P,TH
 AH830B.c_group AH830Human, periodontitis (1995)Norway, OsloH,TH,MLEE
 ATCC6463B.mycoides NRS306 (CIP105442, ATCC6463)  P,AFLP3
 HD1#1GB.thuringiensis kurstaki HD1 (HD1#1)Soil (1970) [MLST data conflicting with isolates BGSC4D1, ATCC33679, and HD1#2; three complete genomes sequenced for this strain: identical MLST sequences between isolates HD1#1 and HD1#3 and different sequences in isolate HD1#2]USACS,H,K,P,TH
 AH566B.c_group AH566Soil, beech grove (1993)Norway, MossAFLP1,AFLP2,MLEE
 SDASU106AB.mycoides SDASU106ADairy products, milk [from dairy silo tank; strains SDASU106A and SDASU106B correspond to mixed populations obtained from the same culture] AFLP3
 KCTC1509B.thuringiensis israelensis KCTC1509 (ATCC35646, HD522)Other, sewage [data from Ko et al. 2004, Infect. Immunity 72, 5253-5261; sequences conflicting with isolate ATCC35646] K,P
 AH721B.c_group AH721Human, urineNorway, SkienH,TH,MLEE
 R11B.cereus NCTC11143 (F4810/72, DSM4312, R11)[data from NERC Centre for Population Biology, London, England, UK; sequences conflicting with isolate F4810/72]UK, England, LondonP
 AH719B.c_group AH719Human, cervixNorway, SkienTH,MLEE
 HD1#3GB.thuringiensis kurstaki HD1 (HD1#3)Animal, Insect larvae (2000) [MLST data conflicting with isolates BGSC4D1, ATCC33679, and HD1#2; three complete genomes sequenced for this strain: identical MLST sequences between isolates HD1#1 and HD1#3 and different sequences in isolate HD1#2]USACS,H,K,P,TH
 KCTC1012B.c_group KCTC1012 (ATCC11778)[B.cereus or B.mycoides; data from Ko et al. 2004, Infect. Immunity 72, 5253-5261; sequences conflicting with isolate ATCC11778] K,P
 AH720B.c_group AH720Human, bloodNorway, SkienTH,MLEE
 AH563B.c_group AH563Soil, beech grove (1993)Norway, MossAFLP1,AFLP2,MLEE
 AH523B.c_group AH523Soil, strawberry field (1993)Norway, MossAFLP1,AFLP2,MLEE
 AH1273GB.cereus AH1273Human, blood; Reykjavik University Hospital (1997) [from the same hospital as isolates AH1270, AH1271, and AH1272]Iceland, ReykjavikCS,H,K,P,TH
 CIP103472B.mycoides CIP103472 (ATCC6462, DSM2048)Soil [AFLP data from Guinebretiere et al. 2008, Environ. Microbiol. 10, 851-865, conflicting with isolate ATCC6462] AFLP3
 AH534B.c_group AH534Soil, strawberry field (1993)Norway, MossAFLP1,AFLP2,MLEE
 MM_3GB.cereus MM3 (MM_3)Food (2003)USACS,H,K,P,TH
 KCTC1014B.cereus KCTC1014 (ATCC21768)Animal, chicken and turkey manureturkey and chicken manure [data from Ko et al. 2004, Infect. Immunity 72, 5253-5261; sequences conflicting with isolate IMSNU12078; data from Ko et al. 2004, Infect. Immunity 72, 5253-5261; sequences conflicting with isolate IMSNU12078] K,P
 AH533B.c_group AH533Soil, strawberry field (1993)Norway, MossAFLP1,AFLP2,MLEE
 F837/76B.cereus F837/76 (AH188, KBBI3)Human, wound [data from Sorokin et al. 2006, Appl. Environ. Microbiol. 72, 1569-1578; sequences conflicting with isolate DSM4222]UKCS
 AH517B.c_group AH517Soil, leaf and grass compost (1993)Norway, MossAFLP1,AFLP2,MLEE
 BGSC4D1B.thuringiensis kurstaki BGSC4D1 (HD1, AH248, KB004)Animal, Insect, diseased larvae of Pink Bollworm (Pectinophora gossypiella) (1970) [MLST, AFLP, and MLEE data conflicting with isolate ATCC33679; MLST data conflicting with isolates HD1#1, HD1#2, and HD1#3]USA, Texas, BrownsvilleCS,P
 DSM350B.thuringiensis DSM350[data from Klee et al. 2006, J. Bacteriol. 188, 5333-5344; sequences conflicting with isolate R2] P
 HD541B.thuringiensis HD541 (BGSC4U1, 74-F-6-18, DSM6079, T11a001)[sequences conflicting with isolate BGSC4U1]JapanP,AFLP2
 AH522B.c_group AH522Soil, strawberry field (1993)Norway, MossAFLP1,AFLP2,MLEE

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